Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 1.9e-237 825.5 424 100.0
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 1.3e-150 537.0 406 70.7
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 1.8e-150 536.6 408 69.1
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 6.7e-150 534.6 408 68.9
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 3.3e-149 532.3 408 69.9
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 1.6e-148 530.0 408 68.1
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 1.3e-145 520.4 407 69.3
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 2.1e-143 513.1 408 66.9
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 2.7e-143 512.7 407 68.6
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 5.1e-142 508.4 406 66.0
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.5e-138 496.9 405 65.2
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 6.5e-129 464.9 392 64.3
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 7.7e-122 441.4 410 58.3
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.5e-120 437.2 409 54.8
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.9e-120 436.8 410 54.9
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 4.2e-120 435.6 410 55.1
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 4.2e-120 435.6 409 54.3
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 1.6e-119 433.7 410 55.4
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.6e-119 433.7 409 54.3
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 2.7e-119 433.0 410 54.9
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.2e-117 427.6 404 55.9
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 1.5e-117 427.2 404 55.9
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 5.7e-117 425.2 403 55.8
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.2e-116 423.3 404 55.0
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 3.7e-116 422.5 403 55.8
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 2.4e-115 419.9 412 54.4
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.1e-115 419.5 402 54.7
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 3.1e-115 419.5 410 54.9
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 8.5e-113 411.4 407 53.1
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 4.2e-112 409.1 350 64.6
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 1.2e-111 407.5 402 55.0
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 2.7e-111 406.4 409 51.6
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 2.3e-110 403.3 409 53.8
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 2.3e-110 403.3 408 54.4
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 2.6e-109 399.8 408 53.7
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 1.1e-107 394.4 408 51.2
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 1.1e-107 394.4 408 51.2
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 1.4e-107 394.0 408 52.5
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.4e-107 393.3 410 52.2
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 5.4e-107 392.1 405 51.4
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 5.4e-107 392.1 404 51.0
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 9.1e-107 391.3 409 49.1
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 2.0e-106 390.2 407 51.1
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 3.5e-106 389.4 409 51.1
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 3.5e-106 389.4 404 52.2
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 4.5e-106 389.0 408 51.5
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.9e-105 386.3 405 49.4
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 2.9e-105 386.3 405 49.1
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 5.0e-105 385.6 405 51.9
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 1.1e-104 384.4 408 52.5
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 2.5e-104 383.3 405 49.1
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 4.2e-104 382.5 398 52.3
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 4.2e-104 382.5 408 52.9
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 1.2e-103 380.9 400 50.8
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.1e-103 380.2 408 52.5
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.8e-103 379.8 405 48.4
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 2.8e-103 379.8 405 48.4
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 6.1e-103 378.6 401 50.1
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 8.0e-103 378.3 411 50.6
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 2.3e-102 376.7 409 49.1
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 4.0e-102 375.9 490 45.9
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 2.0e-101 373.6 407 50.1
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 4.4e-101 372.5 408 51.7
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 4.4e-101 372.5 401 49.9
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 9.8e-101 371.3 405 49.4
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 1.7e-100 370.5 401 48.9
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 2.2e-100 370.2 402 49.0
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.8e-100 369.8 400 49.0
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.8e-100 369.8 410 49.0
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.7e-100 369.4 408 51.0
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 4.9e-100 369.0 399 48.1
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 6.3e-100 368.6 444 45.5
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 3.1e-99 366.3 402 48.3
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 3.1e-99 366.3 407 49.6
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 4.1e-99 365.9 411 48.4
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 7.0e-99 365.2 401 48.1
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.7e-98 363.2 423 49.2
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 3.5e-98 362.8 368 52.2
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 3.5e-98 362.8 408 50.2
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 4.5e-98 362.5 407 48.2
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 4.5e-98 362.5 511 43.4
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 5.9e-98 362.1 399 48.1
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 1.0e-97 361.3 400 48.0
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 2.3e-97 360.1 420 48.8
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 5.0e-97 359.0 401 48.1
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 5.0e-97 359.0 400 47.8
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 5.0e-97 359.0 422 48.8
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 8.6e-97 358.2 399 48.1
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 1.5e-96 357.5 401 47.4
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 7.3e-96 355.1 421 46.3
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 9.5e-96 354.8 412 48.1
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 9.5e-96 354.8 425 47.1
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.8e-95 353.2 399 46.9
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 3.6e-95 352.8 362 52.2
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 6.1e-95 352.1 416 47.4
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 1.4e-94 350.9 405 47.4
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 8.9e-94 348.2 567 40.7
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 2.6e-93 346.7 353 53.0
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 4.4e-93 345.9 412 46.6
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 5.8e-93 345.5 406 45.6
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 7.5e-93 345.1 399 46.9
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 1.1e-91 341.3 406 45.1
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 3.2e-91 339.7 430 43.7
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 4.1e-91 339.3 401 46.9
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 9.2e-91 338.2 405 46.2
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 2.0e-90 337.0 404 45.8
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 2.7e-90 336.7 416 44.5
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 7.8e-90 335.1 354 52.8
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.7e-89 334.0 387 46.3
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 2.3e-89 333.6 408 45.6
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 3.9e-89 332.8 401 45.4
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 3.9e-89 332.8 397 44.8
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 8.6e-89 331.6 398 46.2
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 8.0e-87 325.1 405 44.0
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.8e-86 323.9 394 45.4
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 8.9e-86 321.6 388 45.9
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 1.5e-85 320.9 389 45.8
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 7.5e-85 318.5 407 43.5
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 7.5e-85 318.5 403 44.2
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.7e-84 317.4 412 43.7
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 4.9e-84 315.8 410 42.9
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 7.0e-83 312.0 351 50.1
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 1.2e-82 311.2 330 50.9
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.1e-82 310.5 354 48.0
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 2.1e-82 310.5 476 38.9
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.0e-81 308.1 322 50.3
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 5.1e-81 305.8 392 45.2
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 1.2e-77 294.7 409 41.1
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 4.7e-71 272.7 348 45.7
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 2.2e-68 263.8 340 48.2
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 1.6e-66 257.7 334 44.0
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.1e-63 247.3 248 54.0
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 1.8e-62 244.2 246 52.4
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.9e-60 236.9 156 75.6
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 4.6e-58 229.6 159 72.3
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.3e-57 228.0 257 49.8
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 1.3e-57 228.0 202 56.9
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.0e-57 226.9 351 40.5
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 6.6e-57 225.7 174 66.1
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.1e-56 224.9 174 66.1
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.5e-56 224.6 203 54.7
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.5e-56 224.6 174 65.5
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 3.3e-56 223.4 246 48.0
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.3e-56 223.0 203 54.2
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 5.6e-56 222.6 245 48.2
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.8e-55 219.5 160 68.8
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.8e-54 217.6 378 36.2
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 5.3e-54 216.1 166 65.7
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 1.2e-53 214.9 413 32.4
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 2.6e-53 213.8 354 36.4
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 4.5e-53 213.0 414 33.3
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 3.2e-51 206.8 174 62.6
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 5.4e-51 206.1 412 32.3
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 4.6e-50 203.0 348 37.1
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 8.1e-47 192.2 412 31.8
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 5.8e-45 186.0 411 29.9
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 3.9e-41 173.3 403 29.5
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 8.7e-41 172.2 205 42.9
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 3.3e-40 170.2 408 30.1
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 9.6e-40 168.7 130 63.8
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 6.2e-39 166.0 193 46.1
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 6.2e-39 166.0 160 55.6
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.1e-38 165.2 284 38.4
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 9.0e-38 162.2 295 37.3
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.0e-36 158.7 102 78.4
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 4.9e-36 156.4 123 61.8
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.5e-32 144.1 156 44.9
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 3.3e-32 143.7 156 44.9
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.8e-30 137.9 190 43.7
arahy.Tifrunner.gnm1.ann1.C5B8HT Arachis hypogaea HOM05D002209 ORTHO05D004761 2.6e-29 134.0 67 97.0
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 3.8e-28 130.2 174 42.5
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 2.5e-27 127.5 129 48.8
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 3.9e-25 120.2 136 44.1
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 6.7e-25 119.4 133 43.6
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 1.1e-24 118.6 136 42.6
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 5.9e-13 79.7 153 31.4
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.2e-07 61.2 306 24.8


User provided reference genes

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