Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 6.4e-104 380.9 219 100.0
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 3.7e-59 232.3 205 62.4
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 2.0e-57 226.5 207 65.7
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 9.3e-55 217.6 204 62.7
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 3.6e-54 215.7 209 62.2
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.0e-53 214.2 206 62.6
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 3.3e-52 209.1 215 57.2
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 3.1e-50 202.6 210 57.6
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 5.3e-50 201.8 208 59.1
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.2e-49 200.7 200 61.0
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 1.5e-49 200.3 208 56.7
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 2.5e-47 193.0 209 57.9
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.8e-45 186.8 196 56.1
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.3e-45 186.4 167 63.5
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 6.7e-45 184.9 220 53.2
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 1.7e-43 180.3 212 50.9
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 3.7e-43 179.1 212 52.4
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.1e-42 177.6 212 53.8
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 2.5e-39 166.4 183 51.4
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 7.2e-39 164.9 214 49.5
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 7.2e-39 164.9 206 50.0
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 7.2e-39 164.9 207 50.7
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 1.6e-38 163.7 207 49.8
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 4.7e-38 162.2 202 50.0
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 4.7e-38 162.2 214 50.0
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 2.3e-37 159.8 214 48.6
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 6.7e-37 158.3 217 48.4
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 8.8e-37 157.9 215 46.0
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 8.8e-37 157.9 182 51.6
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.5e-36 157.1 215 48.4
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 2.6e-36 156.4 207 47.3
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 2.6e-36 156.4 215 49.8
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.6e-36 156.4 215 49.8
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.6e-36 156.4 215 49.8
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 4.4e-36 155.6 207 48.8
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 5.7e-36 155.2 224 45.5
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 7.4e-36 154.8 207 48.8
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 7.4e-36 154.8 210 46.7
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 7.4e-36 154.8 215 47.9
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.3e-35 154.1 215 47.4
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 1.3e-35 154.1 209 48.8
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 1.7e-35 153.7 191 49.2
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 1.7e-35 153.7 207 47.8
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.7e-35 153.7 181 50.8
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.2e-35 153.3 209 46.4
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.2e-35 153.3 202 48.5
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 2.2e-35 153.3 202 47.5
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 8.2e-35 151.4 205 47.3
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 8.2e-35 151.4 218 50.0
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.8e-34 150.2 209 46.4
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.4e-34 149.8 207 46.4
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.2e-33 147.5 180 48.3
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.0e-33 146.7 202 47.5
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.0e-33 146.7 202 47.5
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 4.5e-33 145.6 200 44.0
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 4.5e-33 145.6 189 46.0
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.0e-32 144.4 208 47.1
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.3e-32 144.1 202 45.0
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.3e-32 144.1 206 47.6
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.3e-32 144.1 200 44.0
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.7e-32 143.7 189 46.6
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.7e-32 143.7 189 46.6
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.7e-32 143.7 195 44.6
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.9e-32 142.9 189 46.0
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 5.0e-32 142.1 213 48.4
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 6.5e-32 141.7 201 46.3
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 6.5e-32 141.7 212 42.0
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 1.1e-31 141.0 179 46.9
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.9e-31 140.2 228 48.2
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 2.5e-31 139.8 201 47.3
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.2e-31 139.4 202 43.6
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 5.5e-31 138.7 220 40.0
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 7.2e-31 138.3 205 43.9
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 3.6e-30 136.0 196 43.4
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 4.7e-30 135.6 186 47.3
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 8.0e-30 134.8 178 47.2
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 8.0e-30 134.8 181 45.9
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.0e-29 134.4 209 41.1
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 1.8e-29 133.7 193 43.0
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 2.3e-29 133.3 244 40.6
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.3e-29 133.3 185 43.2
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 5.2e-29 132.1 203 42.4
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 8.8e-29 131.3 179 46.9
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.2e-28 131.0 180 45.6
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-28 131.0 178 46.1
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-28 131.0 178 44.4
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-28 131.0 180 45.0
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.5e-28 130.6 217 43.3
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 1.5e-28 130.6 177 45.8
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 1.5e-28 130.6 177 45.8
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.5e-28 130.6 179 44.7
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.5e-28 130.6 212 41.0
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 2.0e-28 130.2 184 44.6
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 3.3e-28 129.4 177 45.2
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.3e-28 129.4 192 44.3
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 5.7e-28 128.6 177 45.8
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 9.7e-28 127.9 182 42.9
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.3e-27 127.5 183 45.4
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.3e-27 127.5 187 41.2
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 2.2e-27 126.7 203 43.8
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.8e-27 126.3 180 43.3
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.8e-27 126.3 196 43.4
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 4.8e-27 125.6 186 44.1
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 6.3e-27 125.2 193 41.5
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 8.2e-27 124.8 180 44.4
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.1e-26 124.4 219 39.3
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.1e-26 124.4 200 43.5
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.1e-26 124.4 210 42.4
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.1e-26 124.4 210 42.4
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 1.8e-26 123.6 209 39.2
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 1.8e-26 123.6 205 45.9
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 4.1e-26 122.5 200 43.5
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 7.0e-26 121.7 190 42.6
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 2.0e-25 120.2 216 39.4
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.0e-25 120.2 181 47.0
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.0e-25 120.2 174 41.4
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 2.0e-25 120.2 190 40.0
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 2.7e-25 119.8 211 40.3
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 2.7e-25 119.8 189 42.9
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 3.5e-25 119.4 189 38.6
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.5e-25 119.4 180 44.4
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 4.5e-25 119.0 179 41.3
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 4.5e-25 119.0 184 41.8
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 5.9e-25 118.6 180 43.3
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 1.0e-24 117.9 175 44.0
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.0e-24 117.9 122 51.6
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.3e-24 117.5 182 44.5
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 1.3e-24 117.5 193 39.4
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.2e-24 116.7 195 42.1
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.2e-24 116.7 209 39.7
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 3.8e-24 115.9 196 39.8
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 6.5e-24 115.2 194 42.8
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 8.5e-24 114.8 209 38.3
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.5e-23 114.0 190 41.6
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.5e-23 114.0 176 42.6
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 3.2e-23 112.8 220 38.2
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.2e-23 112.8 219 38.8
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 7.2e-23 111.7 151 45.0
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 9.4e-23 111.3 188 39.9
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-22 110.9 188 39.9
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 1.2e-22 110.9 177 38.4
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.6e-22 110.5 187 41.7
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 3.6e-22 109.4 199 37.7
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 1.0e-21 107.8 177 41.8
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.0e-21 107.8 187 37.4
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.4e-21 107.5 157 42.7
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.4e-21 107.5 138 44.9
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.3e-21 106.7 180 40.0
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 5.2e-21 105.5 217 39.2
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 6.8e-21 105.1 197 37.6
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 6.8e-21 105.1 197 37.6
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 6.8e-21 105.1 184 39.7
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 8.8e-21 104.8 198 37.4
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 2.6e-20 103.2 142 45.1
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 5.7e-20 102.1 213 36.2
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 9.8e-20 101.3 126 47.6
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.2e-19 100.1 162 41.4
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.8e-19 99.0 156 39.7
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 4.1e-18 95.9 116 50.0
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 9.1e-18 94.7 213 34.7
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 5.0e-16 89.0 180 36.1
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.2e-15 86.3 141 41.1
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 4.2e-15 85.9 277 29.6
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 8.0e-14 81.6 140 39.3
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 8.0e-14 81.6 112 44.6
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-12 77.8 182 33.5
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 2.0e-12 77.0 140 37.1
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 4.4e-12 75.9 141 39.0
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 5.7e-12 75.5 183 33.3
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 2.2e-11 73.6 179 32.4
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 2.2e-11 73.6 179 32.4
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 2.8e-11 73.2 179 32.4
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 4.9e-11 72.4 179 31.8
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 6.3e-11 72.0 179 32.4
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 3.1e-10 69.7 164 29.3
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 4.1e-10 69.3 164 28.0
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 5.4e-10 68.9 201 36.3
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.2e-09 67.8 184 34.2
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.6e-09 67.4 114 37.7
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.0e-09 67.0 185 31.9
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.3e-08 64.3 85 55.3
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 6.6e-08 62.0 66 60.6
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.9e-07 60.5 129 32.6
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 2.5e-07 60.1 66 56.1
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 4.7e-06 55.8 39 74.4


User provided reference genes

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