Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6VXG05 Arachis hypogaea HOM05D001231 ORTHO05D001012 3.9e-44 181.0 89 100.0
Phvul.009G158101 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 1.5e-11 72.8 52 63.5
Lj1g0008875 Lotus japonicus HOM05D001231 ORTHO05D001012 2.0e-11 72.4 52 61.5
Medtr3g097420 Medicago truncatula HOM05D001231 ORTHO05D001012 9.8e-11 70.1 52 61.5
arahy.Tifrunner.gnm1.ann1.UPL4LC Arachis hypogaea HOM05D001231 ORTHO05D001012 1.3e-10 69.7 52 65.4
Glyma.06G160400 Glycine max HOM05D001231 ORTHO05D001012 1.3e-10 69.7 52 61.5
TPR.G29340 Trifolium pratense HOM05D001231 ORTHO05D001012 1.7e-10 69.3 58 56.9
VMungo1309G2262 Vigna mungo HOM05D001231 ORTHO05D001012 2.8e-10 68.6 52 59.6
arahy.Tifrunner.gnm1.ann1.4H5G59 Arachis hypogaea HOM05D001231 ORTHO05D001012 8.3e-10 67.0 52 63.5
Ciclev10026887m.g Citrus clementina HOM05D001231 ORTHO05D001012 1.1e-09 66.6 46 65.2
Medtr8g095375 Medicago truncatula HOM05D001231 ORTHO05D001012 4.1e-09 64.7 53 52.8
Potri.004G138100 Populus trichocarpa HOM05D001231 ORTHO05D001012 5.4e-09 64.3 51 58.8
RcHm_v2.0_Chr5g0024061 Rosa chinensis HOM05D001231 ORTHO05D001012 7.0e-09 63.9 52 55.8
Lalb_Chr08g0237751 Lupinus albus HOM05D001231 ORTHO05D001012 9.2e-09 63.5 51 56.9
COL.COLO4_16210 Corchorus olitorius HOM05D001231 ORTHO05D001012 1.2e-08 63.2 49 61.2
Manes.05G122400 Manihot esculenta HOM05D001231 ORTHO05D001012 1.6e-08 62.8 51 54.9
QL10p038692 Quercus lobata HOM05D001231 ORTHO05D001012 1.6e-08 62.8 51 56.9
Thecc.04G141100 Theobroma cacao HOM05D001231 ORTHO05D001012 1.6e-08 62.8 49 57.1
Thecc.04G140800 Theobroma cacao HOM05D001231 ORTHO05D001012 2.0e-08 62.4 49 57.1
Manes.07G074400 Manihot esculenta HOM05D001231 ORTHO05D001012 2.7e-08 62.0 51 54.9
Prupe.1G201200 Prunus persica HOM05D001231 ORTHO05D001012 2.7e-08 62.0 49 59.2
PGR102G0532 Punica granatum HOM05D001231 ORTHO05D001012 2.7e-08 62.0 53 54.7
CiPaw.04G178300 Carya illinoinensis HOM05D001231 ORTHO05D001012 4.5e-08 61.2 51 52.9
Potri.T011200 Populus trichocarpa HOM05D001231 ORTHO05D001012 4.5e-08 61.2 51 56.9
Potri.T011201 Populus trichocarpa HOM05D001231 ORTHO05D001012 4.5e-08 61.2 51 56.9
Cfa002248 Carpinus fangiana HOM05D001231 ORTHO05D001012 7.8e-08 60.5 51 54.9
FAN25G0202 Fragaria x ananassa HOM05D001231 ORTHO05D001012 1.0e-07 60.1 52 53.8
MD05G1234500 Malus domestica HOM05D001231 ORTHO05D001012 1.0e-07 60.1 52 51.9
Manes.18G077612 Manihot esculenta HOM05D001231 ORTHO05D001012 1.0e-07 60.1 44 61.4
Potri.T011300 Populus trichocarpa HOM05D001231 ORTHO05D001012 1.0e-07 60.1 46 58.7
Potri.T011301 Populus trichocarpa HOM05D001231 ORTHO05D001012 1.0e-07 60.1 46 58.7
Medtr8g095370 Medicago truncatula HOM05D001231 ORTHO05D001012 1.7e-07 59.3 53 50.9
FAN16G3227 Fragaria x ananassa HOM05D001231 ORTHO05D001012 2.9e-07 58.5 52 51.9
Prupe.4G131400 Prunus persica HOM05D001231 ORTHO05D001012 2.9e-07 58.5 52 53.8
Eucgr.F03380 Eucalyptus grandis HOM05D001231 ORTHO05D001012 5.0e-07 57.8 51 52.9
Lj4g0025743 Lotus japonicus HOM05D001231 ORTHO05D001012 5.0e-07 57.8 47 57.4
PGSC0003DMG400032549 Solanum tuberosum HOM05D001231 ORTHO05D001012 5.0e-07 57.8 55 49.1
CAN.G976.6 Capsicum annuum HOM05D001231 ORTHO05D001012 8.6e-07 57.0 46 52.2
Lalb_Chr12g0202751 Lupinus albus HOM05D001231 ORTHO05D001012 1.1e-06 56.6 88 37.5
Thecc.04G177500 Theobroma cacao HOM05D001231 ORTHO05D001012 1.5e-06 56.2 51 47.1
arahy.Tifrunner.gnm1.ann1.IDU4K1 Arachis hypogaea HOM05D001231 ORTHO05D001012 1.9e-06 55.8 45 60.0
THA.LOC109116172 Tarenaya hassleriana HOM05D001231 ORTHO05D001012 1.9e-06 55.8 45 53.3
Ca_17033_v3 Cicer arietinum L. HOM05D001231 ORTHO05D001012 2.5e-06 55.5 52 53.8
Duzib268G0537 Durio zibethinus HOM05D001231 ORTHO05D001012 2.5e-06 55.5 51 47.1
MD00G1135500 Malus domestica HOM05D001231 ORTHO05D001012 2.5e-06 55.5 52 53.8
Hund22171 Selenicereus undatus HOM05D001231 ORTHO05D001012 2.5e-06 55.5 53 52.8
arahy.Tifrunner.gnm1.ann1.X2H08Z Arachis hypogaea HOM05D001231 ORTHO05D001012 3.3e-06 55.1 53 50.9
CiPaw.04G178400 Carya illinoinensis HOM05D001231 ORTHO05D001012 4.3e-06 54.7 52 48.1
Glyma.06G160300 Glycine max HOM05D001231 ORTHO05D001012 4.3e-06 54.7 42 61.9
Phvul.002G278600 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 4.3e-06 54.7 49 49.0
Thhalv10005229m.g Eutrema salsugineum HOM05D001231 ORTHO05D001012 5.6e-06 54.3 45 51.1
Solyc11g006950.3 Solanum lycopersicum HOM05D001231 ORTHO05D001012 5.6e-06 54.3 51 52.9
Sopen11g002870 Solanum pennellii HOM05D001231 ORTHO05D001012 5.6e-06 54.3 51 52.9
Sopen07g003700 Solanum pennellii HOM05D001231 ORTHO05D001012 7.3e-06 53.9 46 47.8
GSVIVG01000230001 Vitis vinifera HOM05D001231 ORTHO05D001012 7.3e-06 53.9 35 68.6
arahy.Tifrunner.gnm1.ann1.IS2QLD Arachis hypogaea HOM05D001231 ORTHO05D001012 9.5e-06 53.5 45 57.8
CSS0011856 Camellia sinensis var. sinensis HOM05D001231 ORTHO05D001012 9.5e-06 53.5 53 49.1
Ciclev10006362m.g Citrus clementina HOM05D001231 ORTHO05D001012 9.5e-06 53.5 59 45.8
HanXRQChr12g0365821 Helianthus annuus HOM05D001231 ORTHO05D001012 9.5e-06 53.5 49 51.0
Phvul.009G158000 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 9.5e-06 53.5 42 66.7
RcHm_v2.0_Chr5g0024081 Rosa chinensis HOM05D001231 ORTHO05D001012 9.5e-06 53.5 52 46.2


User provided reference genes

Program Settings