Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 0.0e+00 1226.8 795 100.0
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 0.0e+00 1159.8 798 90.4
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 1.5e-166 590.9 804 50.2
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 5.4e-161 572.4 821 50.8
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 1.8e-156 557.4 811 50.3
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 4.4e-155 552.7 805 51.4
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 7.6e-147 525.4 818 47.4
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 7.9e-144 515.4 819 48.5
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 2.9e-138 496.9 834 48.3
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 1.3e-135 488.0 803 48.8
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 8.2e-133 478.8 830 46.1
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 1.4e-129 468.0 562 59.1
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 5.5e-129 466.1 809 44.7
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 9.0e-124 448.7 795 52.3
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 1.4e-119 434.9 831 42.0
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 2.2e-114 417.5 828 40.1
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 8.5e-114 415.6 647 45.3
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 1.2e-112 411.8 938 39.6
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 1.6e-112 411.4 871 39.2
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 3.6e-112 410.2 820 43.3
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 7.4e-110 402.5 862 39.0
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 1.7e-109 401.4 859 38.9
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 3.5e-107 393.7 825 42.4
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 4.5e-107 393.3 572 47.2
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 1.7e-106 391.3 836 39.8
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 2.9e-106 390.6 843 38.1
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 1.0e-103 382.1 809 40.9
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 4.0e-103 380.2 796 41.6
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 3.7e-101 373.6 827 39.5
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 5.3e-100 369.8 637 43.6
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 7.0e-100 369.4 584 42.6
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 2.2e-98 364.4 859 41.3
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 2.9e-98 364.0 817 39.8
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 2.9e-98 364.0 840 39.8
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 3.8e-98 363.6 811 39.7
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 4.2e-97 360.1 749 41.9
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 8.8e-95 352.4 873 39.1
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 1.3e-93 348.6 751 39.5
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 2.2e-93 347.8 610 41.8
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 4.8e-93 346.7 574 43.2
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 4.8e-93 346.7 865 35.4
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 2.2e-90 337.8 650 39.7
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 1.5e-89 335.1 572 43.4
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 9.4e-89 332.4 561 41.9
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 3.0e-87 327.4 875 33.9
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 3.0e-87 327.4 512 46.3
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 5.2e-87 326.6 782 41.0
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 1.2e-86 325.5 808 39.4
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 1.2e-86 325.5 647 42.7
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 1.5e-86 325.1 752 37.2
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 4.4e-86 323.6 629 41.0
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 7.5e-86 322.8 879 35.6
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 3.7e-85 320.5 835 35.4
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 6.3e-85 319.7 813 39.1
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 1.2e-83 315.5 821 38.1
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 1.6e-83 315.1 875 34.4
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 1.3e-82 312.0 856 34.6
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 1.1e-81 308.9 836 34.7
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 3.3e-81 307.4 809 39.4
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 9.5e-81 305.8 801 38.3
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 2.3e-79 301.2 512 44.1
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 6.8e-79 299.7 573 41.4
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 7.5e-78 296.2 651 42.4
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 2.4e-76 291.2 823 35.0
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 2.4e-76 291.2 839 32.5
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 1.6e-75 288.5 775 37.0
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 2.0e-75 288.1 774 37.7
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 1.6e-72 278.5 774 34.4
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 6.2e-72 276.6 744 37.5
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 6.2e-72 276.6 803 36.0
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 8.9e-71 272.7 728 37.5
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 8.3e-69 266.2 790 37.5
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 2.4e-68 264.6 779 37.7
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 3.5e-67 260.8 505 41.2
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 1.0e-66 259.2 648 37.5
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 3.9e-66 257.3 733 35.3
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 6.6e-66 256.5 585 38.5
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 2.8e-64 251.1 556 37.1
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 2.8e-64 251.1 556 37.1
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 2.5e-57 228.0 297 50.8
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 5.6e-57 226.9 651 38.4
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 3.6e-56 224.2 665 33.1
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 3.6e-56 224.2 641 36.3
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 6.2e-56 223.4 711 36.3
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 1.1e-55 222.6 641 36.8
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 3.4e-54 217.6 473 35.7
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 7.6e-54 216.5 649 37.8
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 7.6e-54 216.5 649 37.8
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 9.9e-54 216.1 642 37.1
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 6.4e-53 213.4 647 39.4
EL10Ac1g01833 Beta vulgaris HOM05D002134 ORTHO05D008658 5.4e-52 210.3 570 34.9
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 7.8e-51 206.5 659 36.4
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 7.8e-51 206.5 553 35.3
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 5.1e-50 203.8 421 39.9
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 3.6e-48 197.6 662 36.6
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 1.8e-47 195.3 829 33.9
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 1.2e-46 192.6 871 34.4
Ah.11g043170 Amaranthus hybridus HOM05D002134 ORTHO05D008658 2.4e-44 184.9 506 36.8
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 4.2e-44 184.1 603 31.0
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 2.7e-43 181.4 640 31.1
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 7.8e-43 179.9 593 30.4
SHI17315 Sapria himalayana HOM05D002134 ORTHO05D008658 3.2e-36 157.9 217 47.0
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 1.5e-33 149.1 412 31.6
AUR62035457 Chenopodium quinoa HOM05D002134 ORTHO05D008658 2.1e-27 128.6 493 28.4
Cpa.g.sc64.74 Carica papaya HOM05D002134 ORTHO05D008658 7.9e-27 126.7 574 31.0
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 1.9e-25 122.1 528 29.4
Cpa.g.sc64.73 Carica papaya HOM05D002134 ORTHO05D008658 7.4e-25 120.2 201 40.3
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 9.6e-25 119.8 479 28.0
Pp3c7_550 Physcomitrium patens HOM05D002134 ORTHO05D008658 1.5e-17 95.9 544 24.3
Pp3c7_551 Physcomitrium patens HOM05D002134 ORTHO05D008658 1.5e-17 95.9 544 24.3
Oeu036193.1 Olea europaea HOM05D002134 ORTHO05D008658 4.3e-17 94.4 464 33.0
HPP92_018471 Vanilla planifolia HOM05D002134 ORTHO05D008658 2.4e-15 88.6 183 39.3
Actinidia29830 Actinidia chinensis HOM05D002134 ORTHO05D008658 7.2e-12 77.0 75 57.3
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 2.7e-11 75.1 546 27.1
Peaxi162Scf00162g00213 Petunia axillaris HOM05D000561 ORTHO05D000514 2.4e-07 62.0 41 68.3
DCAR_011210 Daucus carota HOM05D001893 ORTHO05D008658 1.5e-06 59.3 80 51.2


User provided reference genes

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