Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 2.8e-230 801.6 411 100.0
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 2.8e-230 801.6 411 100.0
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 1.7e-110 403.7 444 56.1
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 1.0e-107 394.4 447 53.0
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 8.3e-105 384.8 449 53.7
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.4e-104 384.0 442 51.6
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 9.2e-104 381.3 390 56.4
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 1.3e-102 377.5 439 52.6
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 3.9e-102 375.9 414 54.6
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 1.1e-101 374.4 475 50.7
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 4.7e-100 369.0 454 51.1
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 8.0e-100 368.2 451 52.5
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 1.8e-99 367.1 434 52.1
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 4.0e-99 365.9 397 54.7
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 5.2e-99 365.5 457 50.5
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 6.8e-99 365.2 399 55.1
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 1.2e-98 364.4 458 49.6
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 1.4e-96 357.5 447 50.6
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 1.9e-96 357.1 459 49.9
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 2.0e-95 353.6 463 49.2
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 5.0e-94 349.0 469 50.7
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 8.6e-94 348.2 431 50.8
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 1.9e-93 347.1 426 50.5
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.6e-92 344.0 442 49.8
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 2.1e-92 343.6 441 50.3
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 4.7e-92 342.4 409 51.1
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 6.2e-92 342.0 441 50.3
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 1.1e-91 341.3 424 51.2
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 4.0e-91 339.3 458 48.3
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 1.2e-90 337.8 531 44.1
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 3.4e-90 336.3 446 47.8
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 5.8e-90 335.5 465 48.0
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 9.8e-90 334.7 476 46.8
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.9e-89 332.4 433 49.2
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 6.4e-89 332.0 448 48.4
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 6.4e-89 332.0 438 48.9
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 8.3e-89 331.6 480 46.0
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.2e-88 329.7 438 48.9
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 2.7e-87 326.6 442 49.5
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 7.8e-87 325.1 446 49.1
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 3.0e-86 323.2 409 49.4
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 6.6e-86 322.0 445 47.9
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 2.5e-85 320.1 458 47.2
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 2.5e-85 320.1 371 51.2
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 5.6e-85 318.9 439 49.2
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 5.6e-85 318.9 438 47.3
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 1.2e-84 317.8 378 51.9
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 1.1e-83 314.7 398 48.5
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 1.1e-83 314.7 433 48.0
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 1.1e-83 314.7 411 48.9
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 6.8e-83 312.0 397 47.1
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 2.6e-82 310.1 425 46.4
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 5.8e-82 308.9 434 45.2
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 7.6e-82 308.5 425 46.4
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 9.9e-82 308.1 424 47.4
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 1.3e-81 307.8 442 47.5
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 1.7e-81 307.4 419 45.6
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 2.2e-81 307.0 434 45.9
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 3.7e-81 306.2 431 45.0
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 6.4e-81 305.4 389 47.8
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 1.1e-80 304.7 434 45.2
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 4.1e-80 302.8 405 46.7
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 9.2e-80 301.6 425 45.9
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 1.6e-79 300.8 429 45.5
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 6.0e-79 298.9 376 49.7
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 6.0e-79 298.9 454 44.7
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 7.8e-79 298.5 393 49.1
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.0e-78 298.1 444 44.1
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 1.0e-78 298.1 405 46.2
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 1.7e-78 297.4 388 49.0
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.7e-78 297.4 449 44.3
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 2.3e-78 297.0 441 44.9
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 5.1e-78 295.8 427 47.3
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 5.1e-78 295.8 436 45.9
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 1.9e-77 293.9 436 46.3
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 3.3e-77 293.1 312 53.8
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 5.6e-77 292.4 427 44.7
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 5.6e-77 292.4 448 43.3
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 5.6e-77 292.4 341 51.3
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 2.8e-76 290.0 346 50.3
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 4.7e-76 289.3 618 37.7
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 6.2e-76 288.9 440 43.6
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 6.2e-76 288.9 427 44.3
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 6.2e-76 288.9 350 50.3
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 8.1e-76 288.5 431 44.3
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 1.1e-75 288.1 427 44.5
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.8e-75 287.3 449 43.9
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 3.1e-75 286.6 352 50.6
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 6.8e-75 285.4 336 50.3
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 2.6e-74 283.5 434 44.0
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 3.4e-74 283.1 388 46.4
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 5.8e-74 282.3 417 46.0
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 7.6e-74 282.0 388 46.4
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 7.6e-74 282.0 443 41.8
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 9.9e-74 281.6 449 44.5
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 9.9e-74 281.6 445 42.7
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 1.3e-73 281.2 401 47.9
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.7e-73 280.8 463 42.5
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 4.9e-73 279.3 387 47.0
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 8.4e-73 278.5 429 44.3
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 1.4e-72 277.7 388 46.9
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 1.9e-72 277.3 411 44.3
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 1.9e-72 277.3 376 47.1
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 2.4e-72 276.9 421 44.4
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 2.4e-72 276.9 421 44.4
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 5.4e-72 275.8 429 44.1
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 5.4e-72 275.8 339 49.6
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.1e-71 273.9 410 44.1
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 2.7e-71 273.5 444 41.4
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 4.6e-71 272.7 420 44.0
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 1.7e-70 270.8 413 42.4
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 2.3e-70 270.4 414 44.2
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 1.1e-69 268.1 373 48.0
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 7.3e-69 265.4 399 44.9
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 1.3e-68 264.6 414 44.0
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 1.2e-66 258.1 362 46.4
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 1.7e-65 254.2 259 57.9
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 2.9e-65 253.4 384 43.8
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 5.1e-62 242.7 401 41.6
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.1e-60 237.3 399 41.6
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 7.6e-58 228.8 202 58.9
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 1.7e-57 227.6 404 43.1
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 2.9e-57 226.9 136 79.4
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 3.8e-57 226.5 385 39.5
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 5.5e-56 222.6 419 40.8
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 3.9e-54 216.5 432 36.6
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 1.6e-52 211.1 276 48.9
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 5.3e-51 206.1 115 85.2
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 7.6e-50 202.2 110 85.5
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 7.6e-50 202.2 110 85.5
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.8e-49 199.9 300 44.7
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.5e-45 188.0 193 52.8
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.5e-45 188.0 193 52.8
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 2.1e-44 184.1 102 86.3
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 1.2e-42 178.3 302 40.1
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 6.5e-41 172.6 116 75.9
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 6.7e-38 162.5 95 81.1
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 4.5e-34 149.8 129 58.9
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 1.0e-33 148.7 131 51.9
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 8.5e-33 145.6 325 34.2
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 1.0e-30 138.7 76 86.8
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 5.7e-29 132.9 314 41.4
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 6.3e-28 129.4 303 34.7
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 5.3e-27 126.3 311 37.0
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 1.7e-25 121.3 113 54.9
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 4.2e-24 116.7 66 81.8
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 2.1e-23 114.4 314 36.0
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 6.3e-20 102.8 66 74.2
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 7.0e-19 99.4 106 50.9
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.2e-18 98.6 94 54.3
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 2.6e-18 97.4 105 47.6
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 5.5e-16 89.7 63 71.4
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 7.2e-16 89.4 63 66.7
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.4e-14 85.1 92 50.0
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 2.0e-10 71.2 37 81.1
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 1.7e-09 68.2 37 81.1
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 1.1e-08 65.5 50 60.0
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 1.9e-08 64.7 107 35.5
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 2.5e-08 64.3 104 34.6
EL10Ac9g21844 Beta vulgaris HOM05D001651 ORTHO05D000277 7.2e-08 62.8 136 32.4
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 2.7e-07 60.8 77 45.5
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 6.1e-07 59.7 67 50.7
Ca_31319_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.4e-06 58.5 77 44.2
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 1.8e-06 58.2 83 42.2


User provided reference genes

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