Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6QT9XW Arachis hypogaea HOM05D004467 ORTHO05D004918 4.2e-270 934.1 472 100.0
arahy.Tifrunner.gnm1.ann1.4I8WV5 Arachis hypogaea HOM05D004467 ORTHO05D004918 3.4e-235 818.1 499 87.6
Glyma.01G146400 Glycine max HOM05D004467 ORTHO05D004918 3.9e-175 618.6 502 68.7
VMungo0464G1817 Vigna mungo HOM05D004467 ORTHO05D004918 5.9e-171 604.7 506 66.2
Phvul.004G169100 Phaseolus vulgaris HOM05D004467 ORTHO05D004918 2.2e-170 602.8 506 66.2
Lj2g0027738 Lotus japonicus HOM05D004467 ORTHO05D004918 8.5e-170 600.9 506 65.4
Ca_25554_v3 Cicer arietinum L. HOM05D004467 ORTHO05D004918 1.3e-165 587.0 506 66.0
Psat1g045360 Pisum sativum HOM05D004467 ORTHO05D004918 1.2e-160 570.5 502 64.5
Medtr6g087140 Medicago truncatula HOM05D004467 ORTHO05D004918 4.7e-160 568.5 501 64.1
Glyma.09G193900 Glycine max HOM05D004467 ORTHO05D004918 4.8e-157 558.5 503 63.8
Lalb_Chr05g0223111 Lupinus albus HOM05D004467 ORTHO05D004918 9.1e-156 554.3 502 61.4
Lalb_Chr16g0388041 Lupinus albus HOM05D004467 ORTHO05D004918 1.2e-144 517.3 502 59.0
TPR.G28824 Trifolium pratense HOM05D004467 ORTHO05D004918 9.1e-140 501.1 503 58.6
Cfa003215 Carpinus fangiana HOM05D004467 ORTHO05D004918 3.0e-127 459.5 505 54.3
Haze_25793 Corylus avellana HOM05D004467 ORTHO05D004918 4.4e-126 455.7 506 54.0
CiPaw.03G227200 Carya illinoinensis HOM05D004467 ORTHO05D004918 4.3e-121 439.1 503 51.9
Prupe.7G224200 Prunus persica HOM05D004467 ORTHO05D004918 1.3e-117 427.6 505 49.9
QL02p042682 Quercus lobata HOM05D004467 ORTHO05D004918 1.7e-117 427.2 503 52.1
QL02p042959 Quercus lobata HOM05D004467 ORTHO05D004918 2.2e-117 426.8 503 52.1
FAN23G1822 Fragaria x ananassa HOM05D004467 ORTHO05D004918 2.4e-116 423.3 510 50.8
FAN28G1510 Fragaria x ananassa HOM05D004467 ORTHO05D004918 3.2e-116 422.9 508 51.0
FAN26G2528 Fragaria x ananassa HOM05D004467 ORTHO05D004918 7.0e-116 421.8 508 50.8
MD15G1193100 Malus domestica HOM05D004467 ORTHO05D004918 9.2e-116 421.4 503 48.5
FAN26G1468 Fragaria x ananassa HOM05D004467 ORTHO05D004918 2.0e-115 420.2 508 50.4
RcHm_v2.0_Chr2g0091401 Rosa chinensis HOM05D004467 ORTHO05D004918 3.0e-114 416.4 505 50.9
CANSAT56G0937 Cannabis sativa HOM05D004467 ORTHO05D004918 1.1e-113 414.5 505 49.9
FvH4_1g05760 Fragaria vesca HOM05D004467 ORTHO05D004918 1.1e-113 414.5 508 49.8
FAN19G0416 Fragaria x ananassa HOM05D004467 ORTHO05D004918 1.9e-113 413.7 508 49.8
Ciclev10008049m.g Citrus clementina HOM05D004467 ORTHO05D004918 2.8e-112 409.8 515 48.0
Atru.chr7.1422 Acer truncatum HOM05D004467 ORTHO05D004918 9.8e-110 401.4 518 48.5
Manes.16G111600 Manihot esculenta HOM05D004467 ORTHO05D004918 1.0e-106 391.3 517 47.8
COL.COLO4_34790 Corchorus olitorius HOM05D004467 ORTHO05D004918 1.6e-104 384.0 518 46.7
MD02G1058800 Malus domestica HOM05D004467 ORTHO05D004918 2.1e-104 383.6 478 46.9
Manes.03G024900 Manihot esculenta HOM05D004467 ORTHO05D004918 1.5e-102 377.5 519 47.2
Gorai.009G027000 Gossypium raimondii HOM05D004467 ORTHO05D004918 1.4e-100 370.9 520 44.2
Gohir.D05G026900 Gossypium hirsutum HOM05D004467 ORTHO05D004918 1.7e-98 364.0 520 43.8
Duzib187G1021 Durio zibethinus HOM05D004467 ORTHO05D004918 6.6e-98 362.1 516 45.5
Thecc.09G104300 Theobroma cacao HOM05D004467 ORTHO05D004918 6.6e-98 362.1 517 45.8
Gohir.A05G025400 Gossypium hirsutum HOM05D004467 ORTHO05D004918 8.6e-98 361.7 520 43.8
Potri.018G085100 Populus trichocarpa HOM05D004467 ORTHO05D004918 1.9e-97 360.5 518 43.4
Sabra18G0073600 Salix brachista HOM05D004467 ORTHO05D004918 4.0e-95 352.8 517 43.1
Potri.006G162900 Populus trichocarpa HOM05D004467 ORTHO05D004918 7.6e-94 348.6 520 43.5
Duzib168G1064 Durio zibethinus HOM05D004467 ORTHO05D004918 3.2e-92 343.2 521 43.8
TWI32G0931 Tripterygium wilfordii HOM05D004467 ORTHO05D004918 6.0e-91 339.0 518 44.6
Hma1.2p1_0945F.1_g240200 Hydrangea macrophylla HOM05D004467 ORTHO05D004918 2.3e-90 337.0 506 44.5
Actinidia09440 Actinidia chinensis HOM05D004467 ORTHO05D004918 1.1e-89 334.7 507 43.0
Rhsim05G0042300 Rhododendron simsii HOM05D004467 ORTHO05D004918 1.9e-89 334.0 508 42.7
Sopen05g015080 Solanum pennellii HOM05D004467 ORTHO05D004918 8.1e-88 328.6 517 42.0
TWI63G0792 Tripterygium wilfordii HOM05D004467 ORTHO05D004918 1.1e-87 328.2 517 42.4
Eucgr.C03788 Eucalyptus grandis HOM05D004467 ORTHO05D004918 1.4e-87 327.8 492 42.9
Solyc05g018320.3 Solanum lycopersicum HOM05D004467 ORTHO05D004918 5.3e-87 325.9 517 41.8
Actinidia20407 Actinidia chinensis HOM05D004467 ORTHO05D004918 5.8e-86 322.4 509 42.2
Nitab4.5_0004727g0020 Nicotiana tabacum HOM05D004467 ORTHO05D004918 2.2e-85 320.5 516 41.5
Lj7C659T11 Lonicera japonica HOM05D004467 ORTHO05D004918 1.4e-84 317.8 525 41.9
Dinv41649 Davidia involucrata HOM05D004467 ORTHO05D004918 3.2e-84 316.6 510 43.7
CAN.G587.15 Capsicum annuum HOM05D004467 ORTHO05D004918 9.3e-84 315.1 517 41.0
vmacro10868 Vaccinium macrocarpon HOM05D004467 ORTHO05D004918 4.6e-83 312.8 508 41.5
Peaxi162Scf00539g00210 Petunia axillaris HOM05D004467 ORTHO05D004918 1.0e-82 311.6 516 40.9
TAR626G1578 Trochodendron aralioides HOM05D004467 ORTHO05D004918 6.6e-82 308.9 549 41.0
Nitab4.5_0000012g0160 Nicotiana tabacum HOM05D004467 ORTHO05D004918 1.9e-81 307.4 516 40.3
TAR636G0217 Trochodendron aralioides HOM05D004467 ORTHO05D004918 1.9e-81 307.4 549 40.8
Cpa.g.sc40.31 Carica papaya HOM05D004467 ORTHO05D004918 2.5e-81 307.0 516 41.5
ECA240G1275 Erigeron canadensis HOM05D004467 ORTHO05D004918 9.0e-79 298.5 509 41.5
ClCG11G002290 Citrullus lanatus HOM05D004467 ORTHO05D004918 7.6e-78 295.4 506 39.7
CsaV3_2G002070 Cucumis sativus L. HOM05D004467 ORTHO05D004918 3.8e-77 293.1 510 39.0
Nn3g18160 Nelumbo nucifera HOM05D004467 ORTHO05D004918 1.4e-76 291.2 544 39.7
MELO3C004575.2 Cucumis melo HOM05D004467 ORTHO05D004918 1.3e-74 284.6 507 38.9
TAR383G0828 Trochodendron aralioides HOM05D004467 ORTHO05D004918 1.3e-72 278.1 538 38.3
CSS0030226 Camellia sinensis var. sinensis HOM05D004467 ORTHO05D004918 3.7e-72 276.6 475 41.1
PGR102G2224 Punica granatum HOM05D004467 ORTHO05D004918 2.4e-71 273.9 499 39.7
Dinv36673 Davidia involucrata HOM05D004467 ORTHO05D004918 3.4e-70 270.0 403 44.4
Oeu053753.2 Olea europaea HOM05D004467 ORTHO05D004918 4.5e-70 269.6 493 39.4
Gorai.010G074900 Gossypium raimondii HOM05D004467 ORTHO05D004918 5.8e-70 269.2 516 38.6
MSTRG.10616 Avicennia marina HOM05D004467 ORTHO05D004918 1.3e-69 268.1 512 38.3
DCAR_024697 Daucus carota HOM05D004467 ORTHO05D004918 2.2e-69 267.3 514 39.1
CSS0045223 Camellia sinensis var. sinensis HOM05D004467 ORTHO05D004918 1.4e-68 264.6 343 47.2
SalBow5G0997 Salvia bowleyana HOM05D004467 ORTHO05D004918 1.4e-68 264.6 514 36.8
CSS0050424 Camellia sinensis var. sinensis HOM05D004467 ORTHO05D004918 4.2e-68 263.1 342 46.8
Sed0000460 Sechium edule HOM05D004467 ORTHO05D004918 1.2e-67 261.5 503 37.2
PGSC0003DMG401027437 Solanum tuberosum HOM05D004467 ORTHO05D004918 6.7e-66 255.8 355 46.2
Cc06_g10170 Coffea canephora HOM05D004467 ORTHO05D004918 2.8e-64 250.4 510 38.2
MELO3C024641.2 Cucumis melo HOM05D004467 ORTHO05D004918 2.2e-61 240.7 505 35.8
CsaV3_6G021320 Cucumis sativus L. HOM05D004467 ORTHO05D004918 4.9e-61 239.6 508 35.2
Lj8C70G12 Lonicera japonica HOM05D004467 ORTHO05D004918 1.1e-60 238.4 503 38.6
Gohir.A06G065600 Gossypium hirsutum HOM05D004467 ORTHO05D004918 6.0e-59 232.6 406 41.9
EL10Ac8g18417 Beta vulgaris HOM05D004467 ORTHO05D004918 1.3e-58 231.5 492 36.8
Aqoxy7G01500 Aquilegia oxysepala HOM05D004467 ORTHO05D004918 1.1e-57 228.4 544 34.0
Hund26245 Selenicereus undatus HOM05D004467 ORTHO05D004918 1.1e-57 228.4 490 36.1
Sed0017359 Sechium edule HOM05D004467 ORTHO05D004918 2.5e-57 227.3 524 35.1
AT4G28910 Arabidopsis thaliana HOM05D004467 ORTHO05D004918 1.1e-55 221.9 501 36.9
Gohir.D06G064200 Gossypium hirsutum HOM05D004467 ORTHO05D004918 3.1e-55 220.3 515 34.8
AUR62021444 Chenopodium quinoa HOM05D004467 ORTHO05D004918 1.2e-54 218.4 492 35.8
Sp7g26880 Schrenkiella parvula HOM05D004467 ORTHO05D004918 1.2e-54 218.4 501 36.3
Carub.0007s1175 Capsella rubella HOM05D004467 ORTHO05D004918 2.6e-54 217.2 501 36.9
THA.LOC104820046 Tarenaya hassleriana HOM05D004467 ORTHO05D004918 2.7e-51 207.2 509 35.4
Lsat_1_v5_gn_7_41160 Lactuca sativa HOM05D004467 ORTHO05D004918 4.6e-51 206.5 485 34.4
AUR62010932 Chenopodium quinoa HOM05D004467 ORTHO05D004918 1.8e-50 204.5 494 35.2
Hund09233 Selenicereus undatus HOM05D004467 ORTHO05D004918 1.8e-50 204.5 490 33.9
AL7G23580 Arabidopsis lyrata HOM05D004467 ORTHO05D004918 2.0e-49 201.1 482 35.9
CARHR236680 Cardamine hirsuta HOM05D004467 ORTHO05D004918 9.7e-49 198.7 499 34.7
Migut.K00515 Erythranthe guttata HOM05D004467 ORTHO05D004918 4.8e-48 196.4 507 34.3
Thhalv10025262m.g Eutrema salsugineum HOM05D004467 ORTHO05D004918 8.2e-48 195.7 507 35.1
BcaNung01350 Brassica carinata HOM05D004467 ORTHO05D004918 2.6e-46 190.7 503 36.2
SGA_v2.0_scaffold5G02535 Striga asiatica HOM05D004467 ORTHO05D004918 2.2e-45 187.6 499 32.1
C01p10580 Brassica napus HOM05D004467 ORTHO05D004918 8.5e-45 185.7 500 35.6
BraA01t00851Z Brassica rapa HOM05D004467 ORTHO05D004918 2.5e-44 184.1 501 35.5
BcaC09g51670 Brassica carinata HOM05D004467 ORTHO05D004918 6.1e-43 179.5 501 34.7
BolC1t01020H Brassica oleracea HOM05D004467 ORTHO05D004918 1.0e-42 178.7 501 34.7
A01p09030 Brassica napus HOM05D004467 ORTHO05D004918 3.9e-42 176.8 507 34.7
HanXRQChr09g0239001 Helianthus annuus HOM05D004467 ORTHO05D004918 2.0e-41 174.5 493 32.9
unitig_22.g6724 Utricularia gibba HOM05D004467 ORTHO05D004918 7.0e-39 166.0 495 31.3
HanXRQChr03g0061251 Helianthus annuus HOM05D004467 ORTHO05D004918 3.5e-38 163.7 487 33.1
CsaV3_1G019490 Cucumis sativus L. HOM05D004467 ORTHO05D004918 7.7e-38 162.5 405 31.9
PSO210G6045 Papaver somniferum HOM05D004467 ORTHO05D004918 1.3e-37 161.8 522 31.8
PSO210G7819 Papaver somniferum HOM05D004467 ORTHO05D004918 1.2e-35 155.2 521 31.1
ATR0705G047 Amborella trichopoda HOM05D004467 ORTHO05D004918 3.6e-35 153.7 531 32.0
Aa31LG2G21270 Aethionema arabicum HOM05D004467 ORTHO05D004918 6.7e-34 149.4 507 31.8
BraA03t14909Z Brassica rapa HOM05D004467 ORTHO05D004918 4.4e-33 146.7 493 31.8
A03p58480 Brassica napus HOM05D004467 ORTHO05D004918 5.7e-33 146.4 495 30.9
C07p56500 Brassica napus HOM05D004467 ORTHO05D004918 5.7e-33 146.4 497 31.6
MBI01_g39827_MAGBIO Magnolia biondii HOM05D004467 ORTHO05D004918 2.2e-32 144.4 516 30.2
BolC7t46129H Brassica oleracea HOM05D004467 ORTHO05D004918 2.8e-32 144.1 501 31.5
BcaNung02901 Brassica carinata HOM05D004467 ORTHO05D004918 1.8e-31 141.4 497 31.2
MBI01_g24452_MAGBIO Magnolia biondii HOM05D004467 ORTHO05D004918 1.2e-30 138.7 536 29.5
THA.LOC104814564 Tarenaya hassleriana HOM05D004467 ORTHO05D004918 4.5e-30 136.7 483 30.2
GSVIVG01015335001 Vitis vinifera HOM05D004467 ORTHO05D004918 1.1e-28 132.1 208 41.3
BcaNung06399 Brassica carinata HOM05D004467 ORTHO05D004918 2.5e-28 131.0 463 30.9
Sc08g0007800 Simmondsia chinensis HOM05D004467 ORTHO05D004918 4.2e-28 130.2 490 28.6
TAR636G1964 Trochodendron aralioides HOM05D004467 ORTHO05D004918 1.5e-25 121.7 294 35.0
CDE05G2925 Ceratophyllum demersum HOM05D004467 ORTHO05D004918 3.1e-23 114.0 516 28.1
CDE05G0303 Ceratophyllum demersum HOM05D004467 ORTHO05D004918 2.7e-22 110.9 520 27.3
Zm00001eb343360 Zea mays HOM05D004467 ORTHO05D004918 3.5e-22 110.5 532 28.2
HPP92_027881 Vanilla planifolia HOM05D004467 ORTHO05D004918 4.5e-22 110.2 522 27.4
Os05g0558800 Oryza sativa ssp. japonica HOM05D004467 ORTHO05D004918 8.5e-21 105.9 493 27.4
HPP92_006324 Vanilla planifolia HOM05D004467 ORTHO05D004918 1.1e-15 89.0 487 26.5
SEGI_06055 Sequoiadendron giganteum HOM05D025566 ORTHO05D004918 9.1e-15 85.9 600 26.0
Aa31LG8G16970 Aethionema arabicum HOM05D004467 ORTHO05D004918 4.5e-14 83.6 181 42.5
CSS0015707 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 1.0e-13 82.4 169 36.1
CSS0045473 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 1.3e-13 82.0 169 36.1
PGSC0003DMG402027437 Solanum tuberosum HOM05D004467 ORTHO05D004918 5.0e-13 80.1 147 36.1
BcaNung01354 Brassica carinata HOM05D004467 ORTHO05D004918 2.1e-11 74.7 367 27.8
TAR636G0062 Trochodendron aralioides HOM05D004467 ORTHO05D004918 3.0e-10 70.9 171 31.6
Mapoly0005s0166 Marchantia polymorpha HOM05D004467 ORTHO05D000995 9.8e-09 65.9 64 48.4
CsaV3_1G019480 Cucumis sativus L. HOM05D004467 ORTHO05D004918 2.8e-08 64.3 67 52.2
A02p34050 Brassica napus HOM05D004467 ORTHO05D004918 3.7e-08 63.9 117 40.2
A01p20730 Brassica napus HOM05D004467 ORTHO05D004918 4.9e-08 63.5 118 41.5
A03p60110 Brassica napus HOM05D004467 ORTHO05D004918 4.9e-08 63.5 118 41.5
A04p00920 Brassica napus HOM05D004467 ORTHO05D004918 4.9e-08 63.5 118 41.5
A09p39280 Brassica napus HOM05D004467 ORTHO05D004918 4.9e-08 63.5 118 41.5
C07p30780 Brassica napus HOM05D004467 ORTHO05D004918 4.9e-08 63.5 118 41.5
A09p54700 Brassica napus HOM05D004467 ORTHO05D004918 1.4e-07 62.0 118 40.7
PSO782G2485 Papaver somniferum HOM05D004467 ORTHO05D004918 7.0e-07 59.7 60 43.3
SEGI_26530 Sequoiadendron giganteum HOM05D004467 ORTHO05D004918 3.5e-06 57.4 58 44.8


User provided reference genes

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