Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 0.0e+00 1187.2 664 100.0
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 0.0e+00 1115.1 664 95.2
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 1.1e-162 577.8 674 55.3
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 1.7e-155 553.9 677 54.2
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 8.0e-150 535.0 675 52.4
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 2.0e-148 530.4 625 54.4
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 1.9e-143 513.8 718 50.0
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 8.3e-139 498.4 653 51.6
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 1.9e-138 497.3 688 51.0
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 6.0e-137 492.3 698 51.6
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 3.4e-132 476.5 701 49.1
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 3.6e-126 456.4 680 48.2
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 3.3e-119 433.3 613 49.1
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 4.8e-102 376.3 632 44.8
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 4.5e-100 369.8 656 42.5
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.2e-99 367.5 678 41.0
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 3.2e-98 363.6 688 41.1
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 9.3e-98 362.1 625 43.4
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 6.0e-97 359.4 731 39.4
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 6.0e-97 359.4 591 45.2
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 7.9e-97 359.0 716 40.5
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.8e-96 357.8 579 44.2
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.9e-96 356.7 678 41.4
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 8.7e-96 355.5 678 41.4
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 4.3e-95 353.2 669 39.8
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 5.6e-95 352.8 718 38.6
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 1.6e-94 351.3 576 42.9
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 2.1e-94 350.9 572 43.5
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.4e-93 348.2 615 42.3
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.2e-92 345.1 662 39.7
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 1.5e-92 344.7 687 39.4
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 3.4e-92 343.6 619 43.6
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 3.4e-92 343.6 680 38.8
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 4.5e-92 343.2 653 40.6
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 1.0e-91 342.0 611 40.6
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.0e-91 342.0 719 40.8
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 3.8e-91 340.1 577 44.5
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.5e-90 337.4 610 41.1
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 7.1e-90 335.9 679 38.6
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 9.3e-90 335.5 646 40.7
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.5e-89 333.6 613 42.1
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.0e-88 330.5 676 39.2
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 6.7e-88 329.3 609 41.9
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.6e-86 324.7 715 39.4
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 2.1e-86 324.3 614 41.2
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 2.4e-85 320.9 667 40.3
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 3.1e-85 320.5 619 40.9
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 4.1e-85 320.1 620 41.0
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 4.1e-85 320.1 666 38.7
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 5.3e-85 319.7 659 37.8
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 9.0e-85 318.9 580 41.4
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 9.0e-85 318.9 605 41.5
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 9.0e-85 318.9 713 38.8
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.2e-84 318.5 674 39.3
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.5e-84 318.2 664 39.2
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 2.0e-84 317.8 663 37.7
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 2.0e-84 317.8 595 40.5
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 2.6e-84 317.4 636 39.0
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 2.6e-84 317.4 576 42.2
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 4.5e-84 316.6 666 38.3
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.0e-83 315.5 698 38.4
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 3.8e-83 313.5 367 54.2
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 8.5e-83 312.4 667 38.2
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 8.5e-83 312.4 699 37.2
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.1e-82 312.0 663 37.9
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 2.5e-82 310.8 362 54.4
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 4.2e-82 310.1 688 35.9
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 2.1e-81 307.8 284 63.0
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 2.1e-81 307.8 614 41.7
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 7.9e-81 305.8 665 39.1
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 1.0e-80 305.4 613 38.7
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.8e-80 304.7 608 38.8
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 5.1e-80 303.1 598 39.1
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 8.7e-80 302.4 669 37.4
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 3.3e-79 300.4 397 49.6
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 4.3e-79 300.1 613 39.8
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 4.3e-79 300.1 603 38.6
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 5.7e-79 299.7 611 39.1
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 9.7e-79 298.9 613 40.3
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 1.8e-77 294.7 622 36.7
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 1.8e-77 294.7 670 35.7
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 5.3e-77 293.1 627 38.8
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 1.2e-76 292.0 673 37.3
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 1.2e-76 292.0 663 37.6
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 3.4e-76 290.4 663 37.1
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 4.5e-76 290.0 698 35.2
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 7.7e-76 289.3 667 37.3
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 1.7e-75 288.1 614 39.1
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 2.9e-75 287.3 584 39.0
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 5.0e-75 286.6 604 39.1
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 1.9e-74 284.6 582 37.5
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 7.9e-73 279.3 663 37.6
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.9e-73 279.3 282 59.2
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.8e-72 278.1 666 37.1
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.3e-72 277.7 621 36.6
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 3.9e-72 276.9 612 36.9
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 6.7e-72 276.2 304 57.6
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 8.8e-72 275.8 548 40.0
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 4.4e-71 273.5 615 35.8
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 7.4e-71 272.7 635 35.9
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 1.7e-70 271.6 288 55.9
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 1.8e-69 268.1 663 36.0
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 4.1e-69 266.9 725 34.9
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 6.9e-69 266.2 681 35.8
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 4.5e-68 263.5 673 34.9
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 1.3e-67 261.9 679 35.1
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.3e-67 261.9 643 34.2
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 1.3e-67 261.9 696 34.9
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 2.2e-67 261.2 376 47.6
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 2.2e-67 261.2 614 37.1
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 2.9e-67 260.8 673 35.7
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 6.5e-67 259.6 600 35.3
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.1e-66 258.8 534 37.8
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 3.2e-66 257.3 653 35.7
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 7.2e-66 256.1 669 34.5
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 8.8e-64 249.2 666 35.1
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 8.8e-64 249.2 560 36.8
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 2.0e-63 248.1 666 34.1
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 6.3e-62 243.0 574 35.2
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 5.9e-60 236.5 512 39.3
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 7.7e-60 236.1 583 35.2
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 1.9e-58 231.5 637 33.8
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 6.1e-57 226.5 304 52.6
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.0e-56 225.7 256 56.6
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.0e-56 225.7 256 56.6
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 4.0e-56 223.8 573 35.6
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 3.3e-55 220.7 577 33.1
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 7.0e-53 213.0 610 32.6
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 7.7e-52 209.5 599 32.9
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 2.5e-50 204.5 259 50.6
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 9.4e-50 202.6 253 53.4
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 1.6e-49 201.8 253 53.0
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 2.7e-49 201.1 564 33.5
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 8.0e-49 199.5 459 35.3
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 2.3e-48 198.0 587 32.5
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 5.2e-48 196.8 461 34.1
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 5.2e-48 196.8 476 35.1
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.2e-47 195.7 615 31.5
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 1.3e-46 192.2 367 40.1
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 2.9e-43 181.0 574 30.5
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.5e-42 178.7 242 46.3
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.8e-41 174.5 666 30.3
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 5.4e-37 160.2 257 40.9
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 1.2e-36 159.1 725 27.9
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 1.9e-34 151.8 286 38.5
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 4.0e-32 144.1 253 39.9
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 6.4e-30 136.7 274 37.6
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 8.3e-30 136.3 190 46.3
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 1.2e-28 132.5 597 26.0
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 7.8e-28 129.8 213 45.5
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 9.5e-26 122.9 275 35.6
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 8.9e-24 116.3 187 42.2
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 1.3e-22 112.5 121 59.5
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.3e-22 112.5 518 25.7
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 2.0e-20 105.1 137 51.8
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.5e-20 104.4 233 38.2
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 2.3e-19 101.7 265 35.8
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 3.3e-18 97.8 91 57.1
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 4.3e-18 97.4 79 67.1
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 6.2e-17 93.6 179 36.9
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 2.2e-14 85.1 59 67.8
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 3.2e-13 81.3 76 68.4
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 4.1e-13 80.9 58 65.5
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 3.5e-12 77.8 147 42.2
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 4.6e-12 77.4 71 50.7
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.1e-11 73.9 85 49.4
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 8.6e-11 73.2 76 47.4
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 2.5e-10 71.6 76 46.1
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 5.6e-10 70.5 103 41.7
Sp2g28160 Schrenkiella parvula HOM05D008017 ORTHO05D009829 5.6e-10 70.5 75 42.7
BraA06t26123Z Brassica rapa HOM05D008017 ORTHO05D009829 7.3e-10 70.1 50 58.0
C03p61050 Brassica napus HOM05D008017 ORTHO05D009829 1.2e-09 69.3 50 56.0
BolC3t18367H Brassica oleracea HOM05D008017 ORTHO05D009829 1.2e-09 69.3 50 56.0
A06p31900 Brassica napus HOM05D008017 ORTHO05D009829 2.1e-09 68.6 50 58.0
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.7e-09 67.4 92 45.7
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 6.2e-09 67.0 55 50.9
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 6.2e-09 67.0 55 50.9
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 2.4e-08 65.1 111 41.4
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 5.2e-08 63.9 75 42.7
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 5.2e-08 63.9 318 25.5
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.0e-07 62.0 138 34.1
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 2.6e-07 61.6 70 61.4
CARHR293790 Cardamine hirsuta HOM05D004018 ORTHO05D009829 3.4e-07 61.2 83 37.3
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 4.9e-06 57.4 137 35.8
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 6.4e-06 57.0 100 38.0


User provided reference genes

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