Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 7.3e-217 756.9 376 100.0
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 1.1e-215 753.1 376 99.5
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 9.4e-156 553.9 337 80.7
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 2.7e-155 552.4 334 78.1
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 2.0e-153 546.2 337 79.8
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 7.0e-151 537.7 334 75.7
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.0e-149 533.9 335 77.0
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 3.3e-148 528.9 338 76.9
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 4.2e-148 528.5 340 75.3
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 5.7e-145 518.1 312 76.6
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 3.7e-144 515.4 338 72.2
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 8.3e-144 514.2 338 73.7
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 5.4e-143 511.5 340 73.5
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 7.0e-143 511.1 340 72.9
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 9.2e-143 510.8 345 72.2
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.7e-142 509.2 339 71.4
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 3.9e-141 505.4 338 70.7
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 7.3e-140 501.1 330 73.3
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 7.3e-140 501.1 324 74.7
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 1.3e-136 490.3 437 58.4
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 4.1e-135 485.3 340 68.5
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 1.6e-134 483.4 328 70.4
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 3.5e-134 482.3 335 68.4
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.3e-133 479.6 334 68.0
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 6.6e-133 478.0 318 69.8
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.5e-132 476.9 334 68.0
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 1.5e-132 476.9 334 68.0
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.5e-132 476.1 341 67.4
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.5e-132 476.1 341 67.4
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 3.3e-132 475.7 374 65.0
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 4.3e-132 475.3 338 67.5
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 5.6e-132 474.9 337 68.2
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 1.2e-131 473.8 336 68.5
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 2.1e-131 473.0 349 67.6
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 4.7e-131 471.9 339 68.1
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.8e-130 469.9 319 70.2
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 2.3e-130 469.5 336 68.2
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 4.0e-130 468.8 336 66.4
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 6.8e-130 468.0 325 69.5
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 2.6e-129 466.1 319 69.0
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 7.5e-129 464.5 319 68.7
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 3.7e-128 462.2 337 67.4
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.7e-128 462.2 319 68.7
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 3.7e-128 462.2 337 67.4
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 6.4e-128 461.5 319 71.2
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 1.1e-127 460.7 332 67.5
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 2.4e-127 459.5 332 65.7
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 5.4e-127 458.4 342 65.5
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 5.4e-127 458.4 313 70.0
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 7.1e-127 458.0 328 68.3
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 1.2e-126 457.2 384 60.4
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 1.2e-126 457.2 339 64.3
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 2.7e-126 456.1 349 65.0
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 4.6e-126 455.3 337 66.8
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 4.6e-126 455.3 313 70.0
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.0e-125 454.1 348 66.1
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 1.0e-125 454.1 348 66.4
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 3.0e-125 452.6 230 95.2
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 1.9e-124 449.9 332 65.4
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.9e-124 449.9 341 66.0
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 9.5e-124 447.6 305 69.5
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 1.4e-122 443.7 315 67.9
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 1.4e-122 443.7 315 67.9
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.3e-122 443.0 367 59.1
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 3.1e-122 442.6 315 67.9
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 4.0e-122 442.2 363 59.8
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 4.0e-122 442.2 363 59.8
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 3.4e-121 439.1 342 64.0
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 1.3e-120 437.2 334 65.3
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.9e-120 436.0 312 66.3
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 3.7e-120 435.6 308 68.2
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 4.9e-120 435.3 340 64.1
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 8.4e-120 434.5 330 64.5
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 1.4e-119 433.7 333 64.0
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.6e-118 430.3 327 64.8
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 1.6e-118 430.3 324 65.1
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 4.6e-118 428.7 318 66.4
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 1.3e-117 427.2 316 65.8
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 2.3e-117 426.4 327 65.1
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 6.6e-117 424.9 314 66.9
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 1.9e-116 423.3 338 62.1
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 9.6e-116 421.0 338 61.5
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.2e-113 414.1 329 62.9
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.4e-113 412.5 279 71.0
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 3.8e-112 409.1 352 59.9
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.4e-111 407.1 309 64.1
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 2.4e-111 406.4 346 59.8
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 3.2e-111 406.0 272 69.9
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.3e-109 400.6 264 70.1
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 1.7e-109 400.2 269 70.6
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 1.7e-109 400.2 350 58.9
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 5.1e-109 398.7 268 71.3
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 1.1e-108 397.5 377 56.8
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 2.5e-108 396.4 298 65.8
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 4.3e-108 395.6 311 59.8
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 1.1e-106 391.0 271 70.8
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.9e-104 382.9 243 73.3
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 6.6e-101 371.7 248 71.8
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 6.6e-101 371.7 338 57.4
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 4.8e-99 365.5 348 55.7
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 4.0e-98 362.5 407 49.6
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 1.2e-97 360.9 339 56.0
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 5.8e-97 358.6 320 58.4
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 7.6e-97 358.2 319 56.7
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 2.9e-96 356.3 245 68.6
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 3.2e-95 352.8 323 55.4
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 4.2e-95 352.4 324 57.7
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 9.3e-95 351.3 203 74.9
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 3.5e-94 349.4 328 56.7
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 8.7e-93 344.7 296 58.8
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 8.7e-93 344.7 309 56.3
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 3.3e-92 342.8 359 51.8
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 2.4e-90 336.7 330 55.8
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.0e-90 335.9 345 55.1
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.0e-89 333.6 334 54.8
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.9e-88 329.7 348 53.7
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 2.9e-88 329.7 330 55.8
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 6.5e-88 328.6 311 56.3
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.8e-82 310.5 280 57.9
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 7.6e-81 305.1 303 50.8
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.0e-80 304.7 256 59.4
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 1.0e-80 304.7 345 51.3
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 2.5e-79 300.1 392 43.4
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.3e-67 261.2 302 46.0
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 3.8e-64 249.6 343 40.8
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 7.2e-63 245.4 340 40.6
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 9.4e-63 245.0 305 44.3
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 9.7e-60 235.0 302 41.7
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.2e-57 228.0 241 52.3
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 5.9e-57 225.7 131 72.5
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 6.5e-56 222.2 146 69.9
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 4.4e-52 209.5 153 66.7
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.8e-50 204.1 254 41.3
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 2.7e-49 200.3 279 41.6
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 2.2e-48 197.2 113 77.0
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 2.9e-48 196.8 201 46.3
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 2.9e-48 196.8 160 56.9
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 4.7e-46 189.5 340 38.5
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 8.8e-45 185.3 251 43.4
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 3.5e-41 173.3 237 42.6
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.0e-40 171.8 302 35.1
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 6.1e-38 162.5 101 73.3
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 2.9e-32 143.7 272 33.8
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 5.6e-31 139.4 254 33.9
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.0e-29 133.3 260 32.7
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 8.9e-29 132.1 393 27.5
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.5e-28 131.3 232 36.2
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 5.4e-26 122.9 344 30.8
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 9.5e-23 112.1 156 37.8
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.4e-21 108.2 153 39.9
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 2.3e-21 107.5 67 74.6
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 2.3e-21 107.5 67 74.6
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 5.2e-21 106.3 113 39.8
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 5.2e-21 106.3 67 73.1
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 6.8e-21 105.9 84 61.9
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 8.9e-21 105.5 112 37.5
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 4.4e-20 103.2 211 33.2
Glyma.20G173800 Glycine max HOM05D004272 ORTHO05D005020 9.8e-20 102.1 122 51.6
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 9.2e-18 95.5 291 27.5
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 7.8e-17 92.4 60 71.7
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.0e-16 92.0 250 28.8
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 4.7e-14 83.2 80 55.0
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 3.4e-12 77.0 94 47.9
PGR042G2939 Punica granatum HOM05D002901 ORTHO05D003183 5.1e-08 63.2 50 62.0
COL.COLO4_33299 Corchorus olitorius HOM05D004272 ORTHO05D005020 2.5e-07 60.8 68 48.5


User provided reference genes

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