Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 0.0e+00 1174.5 606 100.0
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 0.0e+00 1156.0 606 97.9
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 1.9e-230 802.7 615 68.6
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 2.8e-226 788.9 613 70.1
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 6.9e-225 784.3 634 66.2
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 3.2e-222 775.4 616 68.5
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 5.5e-222 774.6 617 69.0
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 2.1e-221 772.7 613 68.4
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 1.8e-220 769.6 614 68.4
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 2.5e-219 765.8 615 66.5
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 2.0e-216 756.1 614 66.1
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 5.2e-188 661.8 630 59.8
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 7.7e-184 647.9 620 58.2
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 4.7e-181 638.6 619 57.2
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 6.8e-180 634.8 617 56.6
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 3.4e-179 632.5 622 57.1
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 3.7e-178 629.0 619 56.2
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 1.8e-177 626.7 656 54.4
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 1.8e-177 626.7 620 55.5
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 1.6e-173 613.6 614 54.6
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 2.8e-173 612.8 615 56.4
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 3.6e-173 612.5 621 56.2
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 2.3e-172 609.8 619 54.4
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 3.1e-172 609.4 616 55.4
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 4.0e-172 609.0 617 54.6
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 4.0e-172 609.0 624 54.5
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 5.2e-172 608.6 619 54.3
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 6.8e-172 608.2 617 55.6
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 1.5e-171 607.1 613 54.0
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 2.9e-170 602.8 649 52.2
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 2.9e-170 602.8 618 54.9
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 2.9e-170 602.8 637 54.9
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 2.9e-170 602.8 630 54.4
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 3.7e-170 602.4 615 53.7
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 3.7e-170 602.4 619 54.1
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.4e-169 600.5 618 55.8
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 5.4e-169 598.6 643 53.5
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 1.2e-168 597.4 564 56.4
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 2.0e-168 596.7 625 54.2
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 1.7e-167 593.6 618 53.1
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 2.3e-167 593.2 618 52.9
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 1.9e-166 590.1 634 53.6
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 4.4e-163 578.9 613 53.2
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 1.3e-162 577.4 588 54.6
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 2.7e-160 569.7 618 52.6
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 1.2e-157 560.8 614 52.0
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 1.8e-156 557.0 622 51.0
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 1.8e-156 557.0 613 49.6
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 4.4e-155 552.4 617 51.4
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 5.8e-155 552.0 524 58.0
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 1.3e-154 550.8 619 51.4
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 2.2e-154 550.1 601 51.7
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 7.1e-153 545.0 609 50.2
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 9.2e-153 544.7 572 52.8
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 2.1e-152 543.5 527 54.6
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 2.7e-152 543.1 622 51.0
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 3.5e-152 542.7 618 51.1
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 6.6e-151 538.5 597 50.6
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 1.1e-150 537.7 615 50.1
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 1.9e-150 537.0 624 49.0
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 4.3e-150 535.8 611 49.6
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 5.6e-150 535.4 609 49.9
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 7.3e-150 535.0 662 49.7
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 2.8e-149 533.1 559 51.7
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 2.8e-149 533.1 610 51.0
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 1.8e-148 530.4 609 49.6
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 3.1e-148 529.6 623 48.2
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 4.0e-148 529.3 601 51.2
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 6.8e-148 528.5 512 55.1
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 8.9e-148 528.1 545 53.4
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 2.2e-146 523.5 618 50.3
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 4.9e-146 522.3 663 46.8
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 5.4e-145 518.8 610 49.3
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 5.4e-145 518.8 543 51.7
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 8.7e-143 511.5 511 53.4
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 1.9e-142 510.4 616 49.4
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 3.3e-142 509.6 609 48.9
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 1.6e-141 507.3 555 51.5
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 1.8e-140 503.8 537 52.5
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 5.8e-139 498.8 678 45.0
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 6.4e-138 495.4 625 47.0
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 3.2e-137 493.0 560 50.7
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 3.2e-137 493.0 637 46.6
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 5.4e-137 492.3 554 50.9
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 6.0e-136 488.8 637 46.8
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 3.9e-135 486.1 642 46.9
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 5.1e-135 485.7 493 55.2
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 6.6e-135 485.3 516 53.3
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 4.8e-133 479.2 614 46.4
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 2.4e-132 476.9 548 48.7
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 9.0e-132 474.9 599 46.7
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 3.3e-126 456.4 555 46.5
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 9.6e-126 454.9 561 48.1
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 2.8e-125 453.4 422 55.9
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 2.6e-123 446.8 635 43.5
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 2.1e-120 437.2 406 52.7
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 4.1e-116 422.9 527 46.3
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 1.8e-92 344.4 492 41.3
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 2.1e-88 330.9 569 37.6
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 3.8e-82 310.1 449 43.0
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 5.0e-82 309.7 617 37.0
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 7.0e-76 289.3 544 35.5
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 1.8e-63 248.1 284 52.1
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 7.0e-52 209.5 319 38.2
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.4e-46 190.7 202 53.0
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 1.2e-43 182.2 534 28.3
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 4.7e-40 170.2 189 54.5
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 5.6e-33 146.7 442 28.3
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 1.8e-31 141.7 579 24.7
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 7.6e-30 136.3 367 31.9
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 2.4e-20 104.8 99 55.6
Hund31353 Selenicereus undatus HOM05D006562 ORTHO05D008230 7.4e-17 93.2 103 52.4
Hund31354 Selenicereus undatus HOM05D006562 ORTHO05D008230 7.4e-17 93.2 103 52.4
Hund31048 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.3e-16 92.4 103 52.4
Hund31049 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.3e-16 92.4 103 52.4
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 2.0e-14 85.1 61 67.2
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 3.3e-09 67.8 136 33.8
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 1.6e-08 65.5 73 52.1


User provided reference genes

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