Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6LPS1E Arachis hypogaea HOM05D001340 ORTHO05D005342 3.4e-83 311.6 155 100.0
arahy.Tifrunner.gnm1.ann1.Y2Y4QF Arachis hypogaea HOM05D001340 ORTHO05D005342 3.6e-37 158.7 109 78.0
Glyma.10G146800 Glycine max HOM05D001340 ORTHO05D005342 2.0e-35 152.9 156 58.3
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 8.4e-34 147.5 157 57.3
TPR.G2618 Trifolium pratense HOM05D001340 ORTHO05D005342 2.4e-33 146.0 156 57.7
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 7.4e-30 134.4 145 56.6
Cpa.g.sc48.165 Carica papaya HOM05D001340 ORTHO05D005342 2.1e-29 132.9 154 51.9
Lj5g0009841 Lotus japonicus HOM05D001340 ORTHO05D005342 6.2e-29 131.3 155 51.0
Ca_10175_v3 Cicer arietinum L. HOM05D001340 ORTHO05D005342 2.4e-28 129.4 90 75.6
GSVIVG01031244001 Vitis vinifera HOM05D001340 ORTHO05D002318 4.0e-28 128.6 153 49.0
VMungo0720G0959 Vigna mungo HOM05D001340 ORTHO05D005342 1.5e-27 126.7 151 53.0
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 7.6e-27 124.4 152 48.0
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 1.3e-26 123.6 157 47.8
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 2.2e-26 122.9 152 50.0
Hma1.2p1_0008F-1.1_g005585 Hydrangea macrophylla HOM05D001340 ORTHO05D005342 2.2e-26 122.9 158 50.0
Haze_04058 Corylus avellana HOM05D001340 ORTHO05D005342 2.9e-26 122.5 149 49.0
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 3.8e-26 122.1 152 49.3
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 6.5e-26 121.3 152 50.0
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 6.5e-26 121.3 157 51.6
Atru.chr2.201 Acer truncatum HOM05D001340 ORTHO05D005342 8.4e-26 120.9 152 48.7
FvH4_6g07471 Fragaria vesca HOM05D001340 ORTHO05D005342 8.4e-26 120.9 152 48.7
QL03p013901 Quercus lobata HOM05D001340 ORTHO05D005342 1.4e-25 120.2 151 51.0
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 2.5e-25 119.4 173 46.8
Lj5g0005524 Lotus japonicus HOM05D001340 ORTHO05D005342 3.2e-25 119.0 91 69.2
PGR083G1716 Punica granatum HOM05D001340 ORTHO05D005342 3.2e-25 119.0 152 47.4
Phvul.007G201600 Phaseolus vulgaris HOM05D001340 ORTHO05D005342 4.2e-25 118.6 91 68.1
COL.COLO4_05548 Corchorus olitorius HOM05D001340 ORTHO05D005342 5.5e-25 118.2 157 45.9
Glyma.20G096900 Glycine max HOM05D001340 ORTHO05D005342 5.5e-25 118.2 87 71.3
Manes.09G177200 Manihot esculenta HOM05D001340 ORTHO05D005342 5.5e-25 118.2 152 47.4
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 5.5e-25 118.2 160 50.6
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 5.5e-25 118.2 176 43.8
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 1.6e-24 116.7 151 47.0
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 2.1e-24 116.3 152 48.0
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 6.0e-24 114.8 175 41.7
Sc09g0002630 Simmondsia chinensis HOM05D001340 ORTHO05D005342 7.9e-24 114.4 157 47.8
vmacro01564 Vaccinium macrocarpon HOM05D001340 ORTHO05D005342 7.9e-24 114.4 158 46.8
DCAR_029350 Daucus carota HOM05D001340 ORTHO05D005342 1.3e-23 113.6 152 48.0
EL10Ac4g09460 Beta vulgaris HOM05D001340 ORTHO05D005342 1.8e-23 113.2 152 45.4
AUR62006743 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.8e-23 113.2 151 45.0
Rhsim11G0095300 Rhododendron simsii HOM05D001340 ORTHO05D005342 2.3e-23 112.8 160 46.9
CiPaw.08G155200 Carya illinoinensis HOM05D001340 ORTHO05D005342 3.0e-23 112.5 152 47.4
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 3.0e-23 112.5 177 41.8
Glyma.06G236676 Glycine max HOM05D000961 ORTHO05D005342 3.0e-23 112.5 87 69.0
CSS0014814 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 3.9e-23 112.1 158 46.8
TWI36G1129 Tripterygium wilfordii HOM05D001340 ORTHO05D005342 5.1e-23 111.7 148 46.6
CSS0003239 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 6.7e-23 111.3 158 46.2
Eucgr.L00263 Eucalyptus grandis HOM05D001340 ORTHO05D005342 8.7e-23 110.9 151 46.4
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.1e-22 110.5 145 47.6
Nitab4.5_0007698g0020 Nicotiana tabacum HOM05D001340 ORTHO05D005342 1.1e-22 110.5 155 47.1
HanXRQChr06g0173421 Helianthus annuus HOM05D001340 ORTHO05D005342 1.5e-22 110.2 164 44.5
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.9e-22 109.8 145 47.6
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 5.7e-22 108.2 152 45.4
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 7.4e-22 107.8 157 43.9
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 7.4e-22 107.8 152 44.7
MBI19_g40070_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D005342 7.4e-22 107.8 159 44.0
Sabra05G0022300 Salix brachista HOM05D001340 ORTHO05D005342 9.6e-22 107.5 158 42.4
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 1.6e-21 106.7 151 45.7
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.7e-21 105.5 157 44.6
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 3.7e-21 105.5 151 43.0
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 3.7e-21 105.5 152 43.4
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 3.7e-21 105.5 151 44.4
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 6.2e-21 104.8 141 48.2
PSO357G0240 Papaver somniferum HOM05D001340 ORTHO05D005342 6.2e-21 104.8 152 43.4
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 6.2e-21 104.8 151 44.4
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 8.2e-21 104.4 152 42.1
TAR706G0001 Trochodendron aralioides HOM05D001340 ORTHO05D005342 8.2e-21 104.4 104 56.7
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 1.1e-20 104.0 161 43.5
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 1.4e-20 103.6 156 46.2
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 1.4e-20 103.6 151 43.7
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 1.8e-20 103.2 87 62.1
MD12G1205500 Malus domestica HOM05D001340 ORTHO05D005342 1.8e-20 103.2 143 48.3
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 1.8e-20 103.2 159 45.3
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 3.1e-20 102.4 151 42.4
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 4.0e-20 102.1 155 41.9
Sabra13G0007100 Salix brachista HOM05D001340 ORTHO05D005342 4.0e-20 102.1 178 41.0
THA.LOC104816892 Tarenaya hassleriana HOM05D001340 ORTHO05D005342 4.0e-20 102.1 155 43.9
ATR0796G093 Amborella trichopoda HOM05D001340 ORTHO05D005342 5.3e-20 101.7 155 45.8
FAN05G0225 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.5e-19 100.1 137 46.7
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 2.0e-19 99.8 131 45.0
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 3.4e-19 99.0 153 42.5
Duzib106G0021 Durio zibethinus HOM05D001340 ORTHO05D005342 4.5e-19 98.6 67 70.1
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 5.8e-19 98.2 151 42.4
Actinidia35520 Actinidia chinensis HOM05D001340 ORTHO05D005342 7.6e-19 97.8 105 57.1
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 1.0e-18 97.4 159 42.1
AUR62000388 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.0e-18 97.4 88 58.0
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 1.0e-18 97.4 133 45.1
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 1.3e-18 97.1 77 66.2
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 1.7e-18 96.7 156 36.5
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 2.2e-18 96.3 158 40.5
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 2.2e-18 96.3 95 54.7
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 2.9e-18 95.9 156 42.3
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 2.9e-18 95.9 157 42.7
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 2.9e-18 95.9 157 42.7
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 2.9e-18 95.9 132 49.2
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 6.5e-18 94.7 154 42.9
A03p66580 Brassica napus HOM05D001340 ORTHO05D005342 6.5e-18 94.7 155 43.9
CAN.G1.66 Capsicum annuum HOM05D001340 ORTHO05D005342 1.1e-17 94.0 75 66.7
Aa31LG2G11470 Aethionema arabicum HOM05D001340 ORTHO05D005342 2.5e-17 92.8 151 41.7
Sabra05G0021300 Salix brachista HOM05D001340 ORTHO05D005342 4.2e-17 92.0 133 43.6
Pp3c24_17620 Physcomitrium patens HOM05D001340 ORTHO05D005342 9.3e-17 90.9 79 58.2
Zm00001eb354870 Zea mays HOM05D001340 ORTHO05D005342 1.2e-16 90.5 74 59.5
Peaxi162Scf00595g00424 Petunia axillaris HOM05D001340 ORTHO05D005342 1.6e-16 90.1 144 42.4
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 2.1e-16 89.7 159 41.5
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 2.1e-16 89.7 159 41.5
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 1.3e-15 87.0 77 61.0
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 1.3e-15 87.0 80 57.5
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 1.8e-15 86.7 54 74.1
SEGI_40234 Sequoiadendron giganteum HOM05D001340 ORTHO05D005342 1.8e-15 86.7 77 59.7
ClCG02G014870 Citrullus lanatus HOM05D001340 ORTHO05D005342 8.7e-15 84.3 139 39.6
SMO119G0158 Selaginella moellendorffii HOM05D001340 ORTHO05D005342 1.1e-14 84.0 61 65.6
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 1.9e-14 83.2 50 78.0
Mapoly0127s0050 Marchantia polymorpha HOM05D001340 ORTHO05D005342 2.5e-14 82.8 54 74.1
PSO675G7546 Papaver somniferum HOM05D001340 ORTHO05D005342 5.7e-14 81.6 87 51.7
CBR_g3787 Chara braunii HOM05D001340 ORTHO05D005342 1.3e-13 80.5 52 69.2
Cc02_g35070 Coffea canephora HOM05D001340 ORTHO05D005342 1.4e-12 77.0 154 38.3
Peaxi162Scf00750g00034 Petunia axillaris HOM05D001340 ORTHO05D005342 1.4e-12 77.0 64 62.5
CBR_g48354 Chara braunii HOM05D001340 ORTHO05D005342 1.8e-12 76.6 64 57.8
AagrBONN_evm.TU.Sc2ySwM_340.376 Anthoceros agrestis HOM05D001340 ORTHO05D005342 2.4e-12 76.3 50 70.0
CBR_g18648 Chara braunii HOM05D001340 ORTHO05D005342 6.9e-12 74.7 152 37.5
BcaC06g31772 Brassica carinata HOM05D001340 ORTHO05D005342 9.0e-12 74.3 59 64.4
Lsat_1_v5_gn_9_121900 Lactuca sativa HOM05D001340 ORTHO05D005342 4.5e-11 72.0 58 63.8
EL10Ac3g04962 Beta vulgaris HOM05D001340 ORTHO05D005342 3.8e-10 68.9 81 49.4
AUR62015688 Chenopodium quinoa HOM05D001340 ORTHO05D005342 3.2e-09 65.9 49 65.3
AUR62031620 Chenopodium quinoa HOM05D001340 ORTHO05D005342 7.2e-09 64.7 49 65.3
Sabra05G0010800 Salix brachista HOM05D001340 ORTHO05D005342 1.6e-08 63.5 103 41.7
Hund23305 Selenicereus undatus HOM05D001340 ORTHO05D011069 2.1e-08 63.2 54 61.1
Hund23304 Selenicereus undatus HOM05D009075 ORTHO05D011069 3.9e-07 58.9 47 61.7
Sabra05G0010300 Salix brachista HOM05D001340 ORTHO05D005342 6.7e-07 58.2 129 34.1
CBR_g45761 Chara braunii HOM05D001340 ORTHO05D005342 1.1e-06 57.4 50 52.0
AUR62020544 Chenopodium quinoa HOM05D017185 ORTHO05D002895 1.5e-06 57.0 41 63.4
AUR62020511 Chenopodium quinoa HOM05D001340 ORTHO05D011069 5.7e-06 55.1 50 50.0


User provided reference genes

Program Settings