Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 0.0e+00 1173.3 635 100.0
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 0.0e+00 1111.7 635 95.9
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 1.1e-188 664.1 683 61.8
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 2.8e-176 622.9 714 56.4
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 7.6e-174 614.8 692 58.7
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 6.0e-171 605.1 742 52.4
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 1.9e-169 600.1 735 54.8
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 3.7e-160 569.3 688 56.8
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 2.7e-155 553.1 711 52.2
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 5.9e-134 482.3 624 54.3
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 2.7e-131 473.4 697 49.1
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 5.9e-126 455.7 534 56.9
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 1.1e-111 408.3 696 42.2
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 4.3e-108 396.4 729 41.8
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 4.7e-107 392.9 731 40.6
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 3.0e-106 390.2 722 40.6
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 1.3e-104 384.8 712 41.9
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.2e-102 378.3 699 41.5
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 1.6e-102 377.9 699 41.5
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.6e-102 377.9 708 41.8
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 7.8e-102 375.6 689 41.5
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 1.3e-101 374.8 706 40.9
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 6.6e-101 372.5 706 41.4
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 4.3e-100 369.8 709 41.0
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 3.1e-98 363.6 683 40.6
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 8.9e-98 362.1 745 38.8
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 8.9e-98 362.1 727 39.5
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 3.4e-97 360.1 532 47.4
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 4.9e-96 356.3 742 38.7
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 2.1e-94 350.9 678 40.9
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 2.7e-94 350.5 720 38.6
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 7.8e-94 349.0 532 46.6
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 1.1e-92 345.1 706 39.7
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 1.1e-92 345.1 679 40.6
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 3.1e-90 337.0 539 46.2
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 8.9e-90 335.5 708 38.4
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 1.3e-88 331.6 636 41.0
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 4.9e-88 329.7 531 44.4
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.6e-86 324.7 738 37.9
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 4.6e-86 323.2 746 37.0
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 5.1e-85 319.7 746 36.5
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 1.9e-84 317.8 539 42.9
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 2.5e-84 317.4 679 38.4
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.2e-81 308.5 677 39.3
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 7.6e-81 305.8 490 45.7
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.9e-80 303.9 758 34.8
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 3.8e-80 303.5 561 40.8
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.1e-78 297.7 693 37.4
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 3.5e-78 297.0 715 34.4
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 1.3e-77 295.0 681 36.7
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.7e-77 294.7 694 35.2
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 5.6e-76 289.7 655 38.8
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 1.2e-75 288.5 756 34.8
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 4.7e-75 286.6 697 34.9
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 9.0e-74 282.3 778 35.5
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 1.5e-73 281.6 676 34.8
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 2.6e-73 280.8 654 37.6
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 1.7e-72 278.1 683 35.7
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 2.2e-72 277.7 562 38.6
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 1.2e-70 271.9 550 40.7
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 1.6e-70 271.6 689 34.1
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 3.5e-70 270.4 702 35.3
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 3.9e-69 266.9 640 37.8
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 3.9e-69 266.9 694 33.0
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 1.1e-68 265.4 648 36.4
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 5.6e-68 263.1 701 35.2
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 9.6e-68 262.3 674 33.4
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 1.6e-67 261.5 680 33.5
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 6.2e-67 259.6 714 32.9
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 1.1e-66 258.8 714 33.3
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 1.4e-66 258.5 683 36.6
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 1.8e-66 258.1 650 36.0
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 3.1e-66 257.3 688 35.0
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 5.3e-66 256.5 680 34.6
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.2e-65 255.4 506 39.3
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 1.5e-65 255.0 510 37.5
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 4.9e-64 250.0 654 35.3
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 3.2e-63 247.3 650 34.9
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 4.2e-63 246.9 650 35.2
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 5.4e-63 246.5 561 39.0
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 9.3e-63 245.7 713 33.5
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 2.7e-62 244.2 714 32.1
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 4.6e-62 243.4 642 34.7
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 2.3e-61 241.1 627 33.5
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 3.0e-61 240.7 491 39.3
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 1.9e-60 238.0 668 34.7
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 1.9e-60 238.0 621 34.1
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.5e-60 237.7 635 33.5
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 7.4e-60 236.1 572 37.2
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 8.1e-59 232.6 658 35.3
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 9.0e-58 229.2 753 31.3
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 9.0e-58 229.2 793 30.8
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 5.8e-57 226.5 645 32.7
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 9.9e-57 225.7 713 32.1
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 1.3e-56 225.3 559 38.1
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 3.8e-56 223.8 821 29.5
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 4.9e-56 223.4 701 33.2
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.4e-55 221.9 220 56.4
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 1.9e-55 221.5 794 30.7
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 6.0e-54 216.5 694 31.7
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 7.9e-54 216.1 203 60.6
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 1.0e-53 215.7 493 36.3
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 2.3e-53 214.5 345 43.5
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 1.3e-51 208.8 622 33.1
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 1.3e-51 208.8 716 30.6
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 5.8e-49 199.9 311 40.5
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 7.1e-47 193.0 610 33.8
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 9.3e-47 192.6 702 29.8
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 1.6e-46 191.8 492 36.2
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 2.2e-43 181.4 621 32.0
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 1.7e-40 171.8 514 32.9
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 1.6e-38 165.2 585 31.1
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 2.0e-36 158.3 393 38.7
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 1.2e-33 149.1 609 30.5
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 3.4e-33 147.5 516 32.2
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 2.3e-29 134.8 603 30.2
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 8.8e-29 132.9 664 28.3
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 4.8e-27 127.1 74 81.1
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 1.4e-26 125.6 187 44.9
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 4.8e-19 100.5 118 56.8
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 5.0e-16 90.5 74 55.4
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 8.0e-14 83.2 143 46.2
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 6.8e-13 80.1 146 41.1
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 1.8e-10 72.0 93 40.9
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 4.5e-09 67.4 40 70.0
HPP92_019573 Vanilla planifolia HOM05D004882 ORTHO05D005551 2.2e-08 65.1 234 28.6
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 1.9e-07 62.0 63 54.0
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 1.9e-07 62.0 54 57.4
Prupe.8G157000 Prunus persica HOM05D004882 ORTHO05D005551 2.5e-07 61.6 116 40.5
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.2e-07 61.2 199 35.7
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 5.5e-07 60.5 64 45.3
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 9.4e-07 59.7 334 28.7
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 9.4e-07 59.7 362 25.7
Zm00001eb090710 Zea mays HOM05D004882 ORTHO05D005551 1.6e-06 58.9 161 34.8
SHI04903 Sapria himalayana HOM05D004882 ORTHO05D005551 4.7e-06 57.4 38 60.5
Zm00001eb205120 Zea mays HOM05D004882 ORTHO05D005551 6.1e-06 57.0 155 29.0


User provided reference genes

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