Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6EK4ED Arachis hypogaea HOM05D000029 ORTHO05D002586 1.7e-113 413.3 313 100.0
arahy.Tifrunner.gnm1.ann1.MB3Q2U Arachis hypogaea HOM05D000029 ORTHO05D002586 1.0e-70 271.2 169 85.2
arahy.Tifrunner.gnm1.ann1.DUEZ3B Arachis hypogaea HOM05D000029 ORTHO05D002586 4.6e-63 245.7 178 77.5
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 8.6e-62 241.5 172 77.3
arahy.Tifrunner.gnm1.ann1.1L0XSC Arachis hypogaea HOM05D000029 ORTHO05D002586 4.4e-58 229.2 169 76.9
TPR.G31787 Trifolium pratense HOM05D000029 ORTHO05D002586 1.2e-34 151.4 159 52.8
Cfa021397 Carpinus fangiana HOM05D000029 ORTHO05D002586 4.9e-33 146.0 157 52.9
Medtr2g105680 Medicago truncatula HOM05D000029 ORTHO05D002586 8.4e-33 145.2 172 49.4
arahy.Tifrunner.gnm1.ann1.UC5N5L Arachis hypogaea HOM05D000029 ORTHO05D002586 1.4e-32 144.4 152 53.3
TPR.G29911 Trifolium pratense HOM05D000029 ORTHO05D002586 2.5e-32 143.7 170 52.4
Haze_18878 Corylus avellana HOM05D000029 ORTHO05D002586 4.2e-32 142.9 157 53.5
Medtr5g087340 Medicago truncatula HOM05D000029 ORTHO05D002586 4.2e-32 142.9 156 52.6
Medtr5g087360 Medicago truncatula HOM05D000029 ORTHO05D002586 7.9e-31 138.7 173 50.3
QL10p030477 Quercus lobata HOM05D000029 ORTHO05D002586 5.1e-30 136.0 155 51.6
Lj3g0017714 Lotus japonicus HOM05D000029 ORTHO05D002586 1.1e-29 134.8 155 49.7
Glyma.15G001500 Glycine max HOM05D000029 ORTHO05D002586 2.1e-28 130.6 171 46.2
Medtr5g087350 Medicago truncatula HOM05D000029 ORTHO05D002586 8.2e-28 128.6 162 48.1
Ca_00985_v3 Cicer arietinum L. HOM05D000029 ORTHO05D002586 1.1e-27 128.3 176 44.9
Ca_00999_v3 Cicer arietinum L. HOM05D000029 ORTHO05D002586 1.1e-27 128.3 176 44.9
Psat5g046760 Pisum sativum HOM05D000029 ORTHO05D002586 1.1e-27 128.3 156 50.0
TPR.G3503 Trifolium pratense HOM05D000029 ORTHO05D002586 3.1e-27 126.7 150 50.7
Ca_06142_v3 Cicer arietinum L. HOM05D000029 ORTHO05D002586 4.0e-27 126.3 159 50.9
Medtr7g092880 Medicago truncatula HOM05D000029 ORTHO05D002586 4.5e-26 122.9 158 48.1
Manes.04G099100 Manihot esculenta HOM05D000029 ORTHO05D002586 1.1e-24 118.2 159 45.3
TPR.G31191 Trifolium pratense HOM05D000029 ORTHO05D002586 1.4e-24 117.9 142 49.3
Psat5g299600 Pisum sativum HOM05D000029 ORTHO05D002586 1.9e-24 117.5 173 43.9
Manes.04G099300 Manihot esculenta HOM05D000029 ORTHO05D002586 3.2e-24 116.7 159 45.9
COL.COLO4_22867 Corchorus olitorius HOM05D001909 ORTHO05D007079 5.5e-24 115.9 159 44.7
TAR559G0001 Trochodendron aralioides HOM05D000029 ORTHO05D002586 1.2e-23 114.8 168 43.5
Duzib235G1298 Durio zibethinus HOM05D000029 ORTHO05D002586 3.5e-23 113.2 161 42.2
TWI12G0471 Tripterygium wilfordii HOM05D000029 ORTHO05D002586 4.6e-23 112.8 168 40.5
MBI16_g00669_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D002586 1.0e-22 111.7 151 45.7
TWI39G1249 Tripterygium wilfordii HOM05D000029 ORTHO05D002586 2.3e-22 110.5 159 42.8
TPR.G24180 Trifolium pratense HOM05D000029 ORTHO05D025859 3.9e-22 109.8 137 49.6
MD17G1144300 Malus domestica HOM05D000029 ORTHO05D002586 8.7e-22 108.6 156 44.2
PSO063G2705 Papaver somniferum HOM05D000029 ORTHO05D002586 8.7e-22 108.6 149 47.0
TPR.G1170 Trifolium pratense HOM05D000029 ORTHO05D002586 1.9e-21 107.5 153 48.4
TAR625G0481 Trochodendron aralioides HOM05D000029 ORTHO05D002586 1.9e-21 107.5 151 44.4
Sed0005839 Sechium edule HOM05D000029 ORTHO05D002586 3.3e-21 106.7 170 41.2
Lj5C25T13 Lonicera japonica HOM05D000029 ORTHO05D002586 5.7e-21 105.9 167 40.7
DCAR_026433 Daucus carota HOM05D001342 ORTHO05D002586 7.4e-21 105.5 161 43.5
MD09G1158300 Malus domestica HOM05D000029 ORTHO05D002586 1.6e-20 104.4 158 41.8
MELO3C025794.2 Cucumis melo HOM05D000029 ORTHO05D002586 3.7e-20 103.2 175 41.1
Phvul.005G184700 Phaseolus vulgaris HOM05D000029 ORTHO05D002586 1.4e-19 101.3 172 36.6
CiPaw.16G093800 Carya illinoinensis HOM05D000029 ORTHO05D002586 3.1e-19 100.1 102 55.9
Cc04_g00430 Coffea canephora HOM05D000029 ORTHO05D002586 4.1e-19 99.8 159 42.1
Hund21921 Selenicereus undatus HOM05D000029 ORTHO05D002586 5.3e-19 99.4 145 44.1
Nn8g40364 Nelumbo nucifera HOM05D000029 ORTHO05D002586 2.0e-18 97.4 162 42.0
THA.LOC104823328 Tarenaya hassleriana HOM05D000029 ORTHO05D002586 2.0e-18 97.4 165 41.2
CsaV3_3G031210 Cucumis sativus L. HOM05D000029 ORTHO05D002586 2.6e-18 97.1 175 38.9
CsaV3_UNG227850 Cucumis sativus L. HOM05D000029 ORTHO05D002586 2.6e-18 97.1 175 38.9
Nn2g12617 Nelumbo nucifera HOM05D000029 ORTHO05D002586 2.6e-18 97.1 157 42.0
arahy.Tifrunner.gnm1.ann1.UUXJ7Q Arachis hypogaea HOM05D000029 ORTHO05D002586 3.4e-18 96.7 172 40.1
Aqoxy6G02372 Aquilegia oxysepala HOM05D000029 ORTHO05D002586 4.5e-18 96.3 151 43.0
Phvul.007G137800 Phaseolus vulgaris HOM05D000029 ORTHO05D002586 4.5e-18 96.3 151 44.4
TWI23G0691 Tripterygium wilfordii HOM05D000029 ORTHO05D002586 4.5e-18 96.3 168 37.5
VMungo1080G0163 Vigna mungo HOM05D000029 ORTHO05D002586 4.5e-18 96.3 169 37.3
Gohir.A10G007600 Gossypium hirsutum HOM05D000029 ORTHO05D002586 5.9e-18 95.9 169 39.6
PSO017G5321 Papaver somniferum HOM05D000029 ORTHO05D002586 1.0e-17 95.1 163 41.1
Os08g0446200 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D002586 2.9e-17 93.6 150 44.7
TPR.G29903 Trifolium pratense HOM05D000029 ORTHO05D002586 2.9e-17 93.6 101 49.5
MSTRG.22507 Avicennia marina HOM05D000029 ORTHO05D002586 3.8e-17 93.2 159 38.4
VMungo1127G0087 Vigna mungo HOM05D000029 ORTHO05D002586 3.8e-17 93.2 156 42.3
Aqoxy6G02042 Aquilegia oxysepala HOM05D000029 ORTHO05D002586 6.5e-17 92.4 148 43.2
Medtr5g087370 Medicago truncatula HOM05D000029 ORTHO05D002586 6.5e-17 92.4 144 46.5
Phvul.011G166400 Phaseolus vulgaris HOM05D000029 ORTHO05D002586 1.1e-16 91.7 156 41.0
VMungo0720G1393 Vigna mungo HOM05D000029 ORTHO05D002586 1.1e-16 91.7 151 42.4
TAR625G0533 Trochodendron aralioides HOM05D000029 ORTHO05D002586 1.4e-16 91.3 148 43.9
Lalb_Chr17g0347411 Lupinus albus HOM05D000029 ORTHO05D002586 1.9e-16 90.9 68 72.1
Migut.I01152 Erythranthe guttata HOM05D000029 ORTHO05D002586 2.5e-16 90.5 162 39.5
SalBow6G1033 Salvia bowleyana HOM05D000029 ORTHO05D002586 2.5e-16 90.5 165 38.8
Lalb_Chr02g0150951 Lupinus albus HOM05D000029 ORTHO05D002586 3.2e-16 90.1 167 41.9
Ah.14g085770 Amaranthus hybridus HOM05D000029 ORTHO05D002586 4.2e-16 89.7 154 37.7
Rhsim08G0247000 Rhododendron simsii HOM05D000029 ORTHO05D002586 4.2e-16 89.7 156 41.0
RcHm_v2.0_Chr2g0150241 Rosa chinensis HOM05D000029 ORTHO05D002586 7.2e-16 89.0 152 40.1
Sed0011450 Sechium edule HOM05D000029 ORTHO05D002586 7.2e-16 89.0 156 39.7
Lalb_Chr24g0393671 Lupinus albus HOM05D000029 ORTHO05D002586 9.4e-16 88.6 137 40.9
MELO3C025795.2 Cucumis melo HOM05D000029 ORTHO05D002586 1.2e-15 88.2 160 38.8
Prupe.3G167800 Prunus persica HOM05D000029 ORTHO05D002586 1.2e-15 88.2 160 39.4
FvH4_6g37430 Fragaria vesca HOM05D000029 ORTHO05D002586 2.1e-15 87.4 155 38.7
FAN14G3707 Fragaria x ananassa HOM05D000029 ORTHO05D002586 2.1e-15 87.4 155 38.7
Eucgr.F04005 Eucalyptus grandis HOM05D000029 ORTHO05D002586 4.6e-15 86.3 168 38.7
Hund21923 Selenicereus undatus HOM05D000029 ORTHO05D002586 4.6e-15 86.3 144 39.6
Nitab4.5_0002885g0070 Nicotiana tabacum HOM05D000029 ORTHO05D002586 6.1e-15 85.9 158 38.0
PSO724G0700 Papaver somniferum HOM05D000029 ORTHO05D002586 6.1e-15 85.9 111 46.8
TPR.G29920 Trifolium pratense HOM05D000029 ORTHO05D002586 7.9e-15 85.5 153 44.4
Glyma.20G194400 Glycine max HOM05D000029 ORTHO05D002586 1.0e-14 85.1 161 39.8
Hund21922 Selenicereus undatus HOM05D000029 ORTHO05D002586 1.0e-14 85.1 150 36.7
FAN02G2390 Fragaria x ananassa HOM05D000029 ORTHO05D002586 1.4e-14 84.7 155 38.1
FAN09G2714 Fragaria x ananassa HOM05D000029 ORTHO05D002586 1.4e-14 84.7 155 38.1
FAN05G1949 Fragaria x ananassa HOM05D000029 ORTHO05D002586 1.8e-14 84.3 155 38.1
vmacro18700 Vaccinium macrocarpon HOM05D000029 ORTHO05D002586 1.8e-14 84.3 170 38.2
Medtr1g090520 Medicago truncatula HOM05D000029 ORTHO05D002586 2.3e-14 84.0 165 40.6
CsaV3_3G031220 Cucumis sativus L. HOM05D000029 ORTHO05D002586 3.9e-14 83.2 162 36.4
CsaV3_UNG227870 Cucumis sativus L. HOM05D000029 ORTHO05D002586 3.9e-14 83.2 162 36.4
FAN02G3136 Fragaria x ananassa HOM05D000029 ORTHO05D002586 3.9e-14 83.2 158 37.3
Potri.008G009300 Populus trichocarpa HOM05D000029 ORTHO05D002586 3.9e-14 83.2 293 54.9
Dinv37802 Davidia involucrata HOM05D000029 ORTHO05D002586 8.8e-14 82.0 136 38.2
CSS0039856 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D002586 4.3e-13 79.7 155 39.4
Aa31LG4G3350 Aethionema arabicum HOM05D000029 ORTHO05D002586 5.7e-13 79.3 168 39.3
GSVIVG01016126001 Vitis vinifera HOM05D000029 ORTHO05D002586 7.4e-13 79.0 164 34.1
Ah.04g159190 Amaranthus hybridus HOM05D000029 ORTHO05D002586 9.7e-13 78.6 112 44.6
ClCG07G014170 Citrullus lanatus HOM05D000029 ORTHO05D002586 9.7e-13 78.6 155 36.8
FAN05G3853 Fragaria x ananassa HOM05D000029 ORTHO05D002586 1.3e-12 78.2 158 36.7
arahy.Tifrunner.gnm1.ann1.QB387P Arachis hypogaea HOM05D000029 ORTHO05D002586 1.7e-12 77.8 60 76.7
Gorai.011G008200 Gossypium raimondii HOM05D000029 ORTHO05D002586 1.7e-12 77.8 169 34.9
PSO478G5170 Papaver somniferum HOM05D000029 ORTHO05D002586 1.7e-12 77.8 163 37.4
FAN09G1043 Fragaria x ananassa HOM05D000029 ORTHO05D002586 2.8e-12 77.0 161 36.0
Gohir.D10G007500 Gossypium hirsutum HOM05D000029 ORTHO05D002586 2.8e-12 77.0 169 34.3
Aqoxy7G03163 Aquilegia oxysepala HOM05D000109 ORTHO05D002586 4.8e-12 76.3 142 38.0
HPP92_010756 Vanilla planifolia HOM05D000029 ORTHO05D002586 6.3e-12 75.9 140 39.3
Hma1.2p1_1104F.1_g257410 Hydrangea macrophylla HOM05D000029 ORTHO05D002586 1.1e-11 75.1 150 36.7
Prupe.3G167900 Prunus persica HOM05D000029 ORTHO05D002586 1.1e-11 75.1 154 37.7
Sabra08G0005300 Salix brachista HOM05D000029 ORTHO05D002586 1.4e-11 74.7 149 35.6
Thecc.06G016200 Theobroma cacao HOM05D000029 ORTHO05D002586 5.3e-11 72.8 168 32.7
HPP92_010757 Vanilla planifolia HOM05D000029 ORTHO05D002586 5.3e-11 72.8 134 38.8
EL10Ac4g10016 Beta vulgaris HOM05D000029 ORTHO05D002586 6.9e-11 72.4 132 41.7
ATR0580G151 Amborella trichopoda HOM05D000029 ORTHO05D002586 9.1e-11 72.0 143 39.2
Eucgr.F04007 Eucalyptus grandis HOM05D000029 ORTHO05D002586 2.0e-10 70.9 166 34.9
TPR.G15448 Trifolium pratense HOM05D000029 ORTHO05D025859 2.0e-10 70.9 64 64.1
Sed0009650 Sechium edule HOM05D000029 ORTHO05D002586 3.4e-10 70.1 160 34.4
AUR62000279 Chenopodium quinoa HOM05D000029 ORTHO05D002586 4.5e-10 69.7 124 39.5
AUR62006627 Chenopodium quinoa HOM05D000029 ORTHO05D002586 5.9e-10 69.3 125 39.2
Peaxi162Scf00038g02434 Petunia axillaris HOM05D000029 ORTHO05D002586 5.9e-10 69.3 127 37.8
CsaV3_3G031200 Cucumis sativus L. HOM05D001181 ORTHO05D001678 1.0e-09 68.6 105 41.9
CsaV3_UNG227840 Cucumis sativus L. HOM05D001181 ORTHO05D001678 1.0e-09 68.6 105 41.9
BraA07t30636Z Brassica rapa HOM05D000029 ORTHO05D002586 1.3e-09 68.2 151 37.7
Zm00001eb040920 Zea mays HOM05D000029 ORTHO05D002586 1.3e-09 68.2 149 40.9
Manes.16G045200 Manihot esculenta HOM05D000029 ORTHO05D002586 1.7e-09 67.8 164 32.3
Ciclev10024756m.g Citrus clementina HOM05D000029 ORTHO05D002586 2.2e-09 67.4 101 38.6
Actinidia21635 Actinidia chinensis HOM05D000029 ORTHO05D002586 2.9e-09 67.0 140 37.1
TPR.G37759 Trifolium pratense HOM05D000029 ORTHO05D002586 2.9e-09 67.0 157 35.0
SGA_v2.0_scaffold71G24014 Striga asiatica HOM05D000029 ORTHO05D002586 8.5e-09 65.5 146 33.6
A07p29980 Brassica napus HOM05D000029 ORTHO05D002586 2.5e-08 63.9 153 34.6
Potri.008G007600 Populus trichocarpa HOM05D000029 ORTHO05D002586 4.2e-08 63.2 152 31.6
FvH4_6g37420 Fragaria vesca HOM05D000029 ORTHO05D002586 7.2e-08 62.4 158 31.6
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 1.2e-07 61.6 158 34.8
FAN14G2150 Fragaria x ananassa HOM05D000029 ORTHO05D002586 1.2e-07 61.6 158 31.6
Glyma.10G195700 Glycine max HOM05D000029 ORTHO05D002586 1.2e-07 61.6 130 39.2
AL2G32830 Arabidopsis lyrata HOM05D000029 ORTHO05D002586 2.7e-07 60.5 155 35.5
Psat6g171960 Pisum sativum HOM05D000029 ORTHO05D002586 3.6e-07 60.1 156 29.5
Atru.chr1.2777 Acer truncatum HOM05D000029 ORTHO05D002586 6.1e-07 59.3 160 28.8
C06p34330 Brassica napus HOM05D000029 ORTHO05D002586 6.1e-07 59.3 153 34.0
BcaC08g45675 Brassica carinata HOM05D000029 ORTHO05D002586 1.0e-06 58.5 153 33.3
CAN.G790.29 Capsicum annuum HOM05D000029 ORTHO05D002586 1.0e-06 58.5 98 37.8
Thhalv10018036m.g Eutrema salsugineum HOM05D000029 ORTHO05D002586 1.4e-06 58.2 169 34.3
Sp1g15830 Schrenkiella parvula HOM05D000029 ORTHO05D002586 1.8e-06 57.8 148 34.5
AT1G73080 Arabidopsis thaliana HOM05D000029 ORTHO05D002586 3.0e-06 57.0 155 34.8
ECA247G0406 Erigeron canadensis HOM05D000029 ORTHO05D002586 3.0e-06 57.0 104 34.6
Sc12g0007710 Simmondsia chinensis HOM05D000029 ORTHO05D002586 3.0e-06 57.0 65 49.2


User provided reference genes

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