Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6E2HM0 Arachis hypogaea HOM05D007678 ORTHO05D009658 5.9e-49 197.2 99 100.0
arahy.Tifrunner.gnm1.ann1.L3S1G4 Arachis hypogaea HOM05D007678 ORTHO05D009658 1.5e-39 166.0 96 83.3
arahy.Tifrunner.gnm1.ann1.78M82M Arachis hypogaea HOM05D007678 ORTHO05D009658 1.4e-29 132.9 74 90.5
Lj1g0010481 Lotus japonicus HOM05D007678 ORTHO05D009658 4.4e-28 127.9 78 80.8
Glyma.09G240200 Glycine max HOM05D007678 ORTHO05D009658 5.7e-28 127.5 80 80.0
Glyma.18G256300 Glycine max HOM05D007678 ORTHO05D009658 2.9e-27 125.2 108 63.0
Psat3g196520 Pisum sativum HOM05D007678 ORTHO05D009658 1.4e-26 122.9 78 76.9
arahy.Tifrunner.gnm1.ann1.EB95VJ Arachis hypogaea HOM05D007678 ORTHO05D009658 4.1e-26 121.3 63 93.7
VMungo1383G0210 Vigna mungo HOM05D000430 ORTHO05D009658 4.1e-26 121.3 80 77.5
Lalb_Chr17g0337231 Lupinus albus HOM05D007678 ORTHO05D009658 9.2e-26 120.2 78 74.4
Ca_04109_v3 Cicer arietinum L. HOM05D007678 ORTHO05D009658 2.0e-25 119.0 78 76.9
Ca_04118_v3 Cicer arietinum L. HOM05D007678 ORTHO05D009658 2.0e-25 119.0 78 76.9
Haze_02966 Corylus avellana HOM05D007678 ORTHO05D009658 2.0e-25 119.0 78 75.6
Medtr7g009670 Medicago truncatula HOM05D007678 ORTHO05D009658 5.9e-25 117.5 78 73.1
QL04p021923 Quercus lobata HOM05D007678 ORTHO05D009658 1.5e-23 112.8 78 73.1
QL04p021970 Quercus lobata HOM05D007678 ORTHO05D009658 1.5e-23 112.8 84 67.9
arahy.Tifrunner.gnm1.ann1.1DGF2A Arachis hypogaea HOM05D007678 ORTHO05D009658 5.6e-23 110.9 63 85.7
QL04p022035 Quercus lobata HOM05D007678 ORTHO05D009658 1.6e-22 109.4 82 67.1
Atru.chr2.1713_Atru.chr2.1714 Acer truncatum HOM05D007678 ORTHO05D009658 3.6e-22 108.2 78 67.9
TPR.G4277 Trifolium pratense HOM05D007678 ORTHO05D009658 3.6e-22 108.2 66 78.8
Duzib106G1843 Durio zibethinus HOM05D007678 ORTHO05D009658 6.2e-22 107.5 78 67.9
Actinidia01693 Actinidia chinensis HOM05D007678 ORTHO05D009658 5.2e-21 104.4 78 66.7
Thecc.10G137600 Theobroma cacao HOM05D007678 ORTHO05D009658 5.2e-21 104.4 78 66.7
EL10Ac2g02701 Beta vulgaris HOM05D007678 ORTHO05D009658 6.8e-21 104.0 78 65.4
AUR62031676 Chenopodium quinoa HOM05D007678 ORTHO05D009658 6.8e-21 104.0 78 67.9
Phvul.008G043200 Phaseolus vulgaris HOM05D007678 ORTHO05D009658 8.9e-21 103.6 68 76.5
Potri.001G033500 Populus trichocarpa HOM05D007678 ORTHO05D009658 1.2e-20 103.2 78 66.7
Eucgr.G03196 Eucalyptus grandis HOM05D007678 ORTHO05D009658 3.4e-20 101.7 78 67.9
Prupe.2G048500 Prunus persica HOM05D007678 ORTHO05D009658 3.4e-20 101.7 78 66.7
RcHm_v2.0_Chr1g0328821 Rosa chinensis HOM05D007678 ORTHO05D009658 3.4e-20 101.7 78 66.7
FAN10G0661 Fragaria x ananassa HOM05D007678 ORTHO05D009658 7.5e-20 100.5 78 66.7
FvH4_7g04260 Fragaria vesca HOM05D007678 ORTHO05D009658 9.8e-20 100.1 78 65.4
Ah.12g064780 Amaranthus hybridus HOM05D007678 ORTHO05D009658 1.7e-19 99.4 78 64.1
Dinv31528 Davidia involucrata HOM05D007678 ORTHO05D009658 2.9e-19 98.6 78 61.5
COL.COLO4_04659 Corchorus olitorius HOM05D007678 ORTHO05D009658 4.9e-19 97.8 93 58.1
MD02G1272300 Malus domestica HOM05D007678 ORTHO05D009658 1.1e-18 96.7 78 62.8
CiPaw.14G011000 Carya illinoinensis HOM05D007678 ORTHO05D009658 1.9e-18 95.9 97 55.7
DCAR_001914 Daucus carota HOM05D007678 ORTHO05D009658 1.9e-18 95.9 78 59.0
TWI38G1059 Tripterygium wilfordii HOM05D007678 ORTHO05D009658 1.9e-18 95.9 78 60.3
TAR623G0324 Trochodendron aralioides HOM05D007678 ORTHO05D009658 2.4e-18 95.5 78 59.0
PGR031G1114 Punica granatum HOM05D007678 ORTHO05D009658 4.1e-18 94.7 78 61.5
CAN.G128.118 Capsicum annuum HOM05D001269 ORTHO05D001083 5.4e-18 94.4 78 60.3
Gohir.D10G198600 Gossypium hirsutum HOM05D007678 ORTHO05D009658 5.4e-18 94.4 78 61.5
Sed0019894 Sechium edule HOM05D000001 ORTHO05D000003 5.4e-18 94.4 78 62.8
Gohir.A10G190900 Gossypium hirsutum HOM05D007678 ORTHO05D009658 1.2e-17 93.2 78 60.3
CsaV3_5G029470 Cucumis sativus L. HOM05D007678 ORTHO05D000003 1.6e-17 92.8 78 57.7
Sc10g0003150 Simmondsia chinensis HOM05D007678 ORTHO05D009658 1.6e-17 92.8 73 61.6
Hund13420 Selenicereus undatus HOM05D007678 ORTHO05D009658 2.0e-17 92.4 86 60.5
CDE09G0612 Ceratophyllum demersum HOM05D007678 ORTHO05D009658 3.5e-17 91.7 78 53.8
Gorai.011G222500 Gossypium raimondii HOM05D007678 ORTHO05D009658 3.5e-17 91.7 78 59.0
Nn7g37012 Nelumbo nucifera HOM05D007678 ORTHO05D009658 4.6e-17 91.3 78 55.1
Solyc10g081280.2 Solanum lycopersicum HOM05D007678 ORTHO05D009658 4.6e-17 91.3 78 56.4
Sopen10g031780 Solanum pennellii HOM05D007678 ORTHO05D009658 4.6e-17 91.3 78 56.4
PGSC0003DMG401028118 Solanum tuberosum HOM05D007678 ORTHO05D009658 4.6e-17 91.3 78 57.7
HanXRQChr12g0376111 Helianthus annuus HOM05D007678 ORTHO05D009658 6.0e-17 90.9 78 61.5
ECA248G0545 Erigeron canadensis HOM05D007678 ORTHO05D009658 7.8e-17 90.5 78 60.3
Nitab4.5_0008005g0010 Nicotiana tabacum HOM05D007678 ORTHO05D009658 1.0e-16 90.1 78 57.7
Sabra01G0023800 Salix brachista HOM05D007678 ORTHO05D009658 1.0e-16 90.1 95 53.7
MELO3C034052.2 Cucumis melo HOM05D007678 ORTHO05D009658 1.3e-16 89.7 78 56.4
Migut.J01589 Erythranthe guttata HOM05D007678 ORTHO05D009658 1.3e-16 89.7 78 57.7
FAN06G1516 Fragaria x ananassa HOM05D007678 ORTHO05D009658 1.3e-16 89.7 79 59.5
ATR0307G037 Amborella trichopoda HOM05D007678 ORTHO05D009658 2.3e-16 89.0 78 53.8
Cc06_g20600 Coffea canephora HOM05D007678 ORTHO05D009658 3.0e-16 88.6 78 56.4
Manes.04G155050 Manihot esculenta HOM05D007678 ORTHO05D009658 3.9e-16 88.2 67 65.7
CSS0047660 Camellia sinensis var. sinensis HOM05D007678 ORTHO05D009658 6.6e-16 87.4 74 60.8
Peaxi162Scf00153g00057 Petunia axillaris HOM05D007678 ORTHO05D009658 8.6e-16 87.0 78 52.6
Rhsim01G0121700 Rhododendron simsii HOM05D007678 ORTHO05D009658 8.6e-16 87.0 63 68.3
Cpa.g.sc33.162 Carica papaya HOM05D007678 ORTHO05D009658 1.5e-15 86.3 65 70.8
SalBow6G2419 Salvia bowleyana HOM05D007678 ORTHO05D009658 1.9e-15 85.9 77 55.8
Zm00001eb303400 Zea mays HOM05D007678 ORTHO05D009658 1.9e-15 85.9 78 50.0
Lsat_1_v5_gn_7_114920 Lactuca sativa HOM05D007678 ORTHO05D009658 3.3e-15 85.1 79 58.2
unitig_37.g12769 Utricularia gibba HOM05D007678 ORTHO05D009658 6.2e-14 80.9 78 51.3
vmacro20847 Vaccinium macrocarpon HOM05D007678 ORTHO05D009658 8.1e-14 80.5 76 57.9
HPP92_018248 Vanilla planifolia HOM05D007678 ORTHO05D009658 1.4e-13 79.7 78 47.4
Oeu044217.3 Olea europaea HOM05D007678 ORTHO05D009658 8.9e-13 77.0 63 60.3
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.5e-12 76.3 45 84.4
arahy.Tifrunner.gnm1.ann1.MMNX5U Arachis hypogaea HOM05D000747 ORTHO05D009658 9.9e-12 73.6 67 64.2
Mapoly0003s0067 Marchantia polymorpha HOM05D007678 ORTHO05D009658 1.3e-11 73.2 78 44.9
CBR_g30334 Chara braunii HOM05D007678 ORTHO05D009658 2.2e-11 72.4 78 42.3
MBI13_g30074_MAGBIO Magnolia biondii HOM05D007678 ORTHO05D009658 2.2e-11 72.4 63 55.6
Nitab4.5_0000062g0570 Nicotiana tabacum HOM05D007678 ORTHO05D009658 3.7e-11 71.6 78 50.0
Pp3c18_7980 Physcomitrium patens HOM05D007678 ORTHO05D009658 1.1e-10 70.1 78 46.2
SMO174G0167 Selaginella moellendorffii HOM05D007678 ORTHO05D009658 3.2e-10 68.6 78 43.6
PRCOL_00006709 Prasinoderma coloniale HOM05D007678 ORTHO05D009658 3.9e-08 61.6 65 41.5
MCO01G505 Micromonas commoda HOM05D007678 ORTHO05D009658 1.9e-07 59.3 64 37.5
CANSAT56G0191 Cannabis sativa HOM05D007678 ORTHO05D009658 2.1e-06 55.8 46 63.0
GSVIVG01012452001 Vitis vinifera HOM05D007678 ORTHO05D009658 2.1e-06 55.8 43 62.8


User provided reference genes

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