Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6DR1RM Arachis hypogaea HOM05D001162 ORTHO05D001218 2.7e-34 148.3 85 100.0
arahy.Tifrunner.gnm1.ann1.WD55VX Arachis hypogaea HOM05D001162 ORTHO05D001218 1.6e-31 139.0 79 100.0
arahy.Tifrunner.gnm1.ann1.LPL3F8 Arachis hypogaea HOM05D001162 ORTHO05D001218 1.1e-30 136.3 79 88.6
Glyma.08G193200 Glycine max HOM05D001162 ORTHO05D001218 2.1e-10 68.9 82 52.4
Glyma.07G010200 Glycine max HOM05D001162 ORTHO05D001218 7.9e-10 67.0 69 53.6
Medtr8g016310 Medicago truncatula HOM05D001162 ORTHO05D001218 1.0e-09 66.6 83 49.4
Lj3g0018514 Lotus japonicus HOM05D001162 ORTHO05D001218 1.4e-09 66.2 82 52.4
Phvul.010G139100 Phaseolus vulgaris HOM05D001162 ORTHO05D001218 1.8e-09 65.9 82 52.4
VMungo0331G0797 Vigna mungo HOM05D001162 ORTHO05D001218 2.3e-09 65.5 69 53.6
Glyma.15G024100 Glycine max HOM05D001162 ORTHO05D001218 1.1e-08 63.2 82 48.8
RcHm_v2.0_Chr2g0143201 Rosa chinensis HOM05D001162 ORTHO05D001218 1.5e-08 62.8 86 52.3
Ca_23317_v3 Cicer arietinum L. HOM05D001162 ORTHO05D001218 3.3e-08 61.6 85 49.4
Atru.chr1.3780 Acer truncatum HOM05D001162 ORTHO05D001218 9.7e-08 60.1 82 54.9
Ciclev10024908m.g Citrus clementina HOM05D001162 ORTHO05D001218 9.7e-08 60.1 83 48.2
Cc04_g01950 Coffea canephora HOM05D001162 ORTHO05D001218 9.7e-08 60.1 73 49.3
Sc12g0006290 Simmondsia chinensis HOM05D001162 ORTHO05D001218 9.7e-08 60.1 73 49.3
MSTRG.4768 Avicennia marina HOM05D001162 ORTHO05D001218 1.7e-07 59.3 81 46.9
Thecc.06G113500 Theobroma cacao HOM05D001162 ORTHO05D001218 1.7e-07 59.3 79 48.1
FvH4_6g33350 Fragaria vesca HOM05D001162 ORTHO05D001218 2.2e-07 58.9 86 50.0
FAN05G5618 Fragaria x ananassa HOM05D001162 ORTHO05D001218 2.2e-07 58.9 86 50.0
Manes.11G026500 Manihot esculenta HOM05D001162 ORTHO05D001218 2.2e-07 58.9 86 46.5
Phvul.005G159600 Phaseolus vulgaris HOM05D001162 ORTHO05D001218 2.8e-07 58.5 82 48.8
Hund20855 Selenicereus undatus HOM05D001162 ORTHO05D001218 2.8e-07 58.5 80 45.0
Sc04g0002560 Simmondsia chinensis HOM05D001162 ORTHO05D001218 2.8e-07 58.5 84 51.2
Duzib160G0505 Durio zibethinus HOM05D001162 ORTHO05D001218 4.8e-07 57.8 84 48.8
Cpa.g.sc131.51 Carica papaya HOM05D001162 ORTHO05D001218 6.3e-07 57.4 82 47.6
Duzib192G0337 Durio zibethinus HOM05D001162 ORTHO05D001218 6.3e-07 57.4 82 48.8
Manes.04G139600 Manihot esculenta HOM05D001162 ORTHO05D001218 6.3e-07 57.4 81 48.1
CSS0046354 Camellia sinensis var. sinensis HOM05D001162 ORTHO05D001218 8.2e-07 57.0 73 47.9
FAN14G5741 Fragaria x ananassa HOM05D001162 ORTHO05D001218 1.1e-06 56.6 86 48.8
Lj5C45T5 Lonicera japonica HOM05D001162 ORTHO05D001218 1.1e-06 56.6 83 49.4
Lalb_Chr24g0396381 Lupinus albus HOM05D001162 ORTHO05D001218 1.1e-06 56.6 82 39.0
FAN02G3396 Fragaria x ananassa HOM05D001162 ORTHO05D001218 1.4e-06 56.2 83 48.2
Hma1.2p1_0388F.1_g142340 Hydrangea macrophylla HOM05D001162 ORTHO05D001218 1.8e-06 55.8 83 47.0
Duzib235G0695 Durio zibethinus HOM05D001162 ORTHO05D001218 2.4e-06 55.5 81 46.9
arahy.Tifrunner.gnm1.ann1.F47PG2 Arachis hypogaea HOM05D001162 ORTHO05D001218 3.1e-06 55.1 79 48.1
arahy.Tifrunner.gnm1.ann1.YL4R3A Arachis hypogaea HOM05D001162 ORTHO05D001218 3.1e-06 55.1 79 48.1
FAN09G2603 Fragaria x ananassa HOM05D001162 ORTHO05D001218 3.1e-06 55.1 86 47.7
MD09G1193400 Malus domestica HOM05D001162 ORTHO05D001218 3.1e-06 55.1 85 48.2
PGR102G2653 Punica granatum HOM05D001162 ORTHO05D001218 3.1e-06 55.1 84 48.8
SalBow7G4614 Salvia bowleyana HOM05D001162 ORTHO05D001218 3.1e-06 55.1 85 45.9
Lj3g0008624 Lotus japonicus HOM05D001162 ORTHO05D001218 4.1e-06 54.7 83 44.6
Prupe.3G049800 Prunus persica HOM05D001162 ORTHO05D001218 4.1e-06 54.7 79 43.0
Atru.chr13.2056 Acer truncatum HOM05D001162 ORTHO05D001218 5.3e-06 54.3 84 46.4
Dinv30379 Davidia involucrata HOM05D001162 ORTHO05D001218 5.3e-06 54.3 81 46.9
Migut.D00969 Erythranthe guttata HOM05D001162 ORTHO05D001218 5.3e-06 54.3 74 43.2
Eucgr.J02860 Eucalyptus grandis HOM05D001162 ORTHO05D001218 5.3e-06 54.3 82 47.6
SGA_v2.0_scaffold68G22926 Striga asiatica HOM05D001162 ORTHO05D001218 5.3e-06 54.3 86 45.3
TAR383G0671 Trochodendron aralioides HOM05D001162 ORTHO05D001218 5.3e-06 54.3 79 49.4
CANSAT56G3796 Cannabis sativa HOM05D001162 ORTHO05D001218 6.9e-06 53.9 70 48.6
Haze_15950 Corylus avellana HOM05D001162 ORTHO05D001218 6.9e-06 53.9 82 46.3
Solyc03g121590.3 Solanum lycopersicum HOM05D001162 ORTHO05D001218 6.9e-06 53.9 82 47.6
Sopen03g040400 Solanum pennellii HOM05D001162 ORTHO05D001218 6.9e-06 53.9 82 47.6
COL.COLO4_38600 Corchorus olitorius HOM05D001162 ORTHO05D001218 9.1e-06 53.5 73 47.9
DCAR_026383 Daucus carota HOM05D001162 ORTHO05D001218 9.1e-06 53.5 69 46.4
TAR626G0565 Trochodendron aralioides HOM05D001162 ORTHO05D001218 9.1e-06 53.5 71 53.5
GSVIVG01016855001 Vitis vinifera HOM05D001162 ORTHO05D001218 9.1e-06 53.5 82 43.9


User provided reference genes

Program Settings