Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6CV8VS Arachis hypogaea HOM05D006592 ORTHO05D008122 0.0e+00 1135.2 556 100.0
arahy.Tifrunner.gnm1.ann1.35U8WI Arachis hypogaea HOM05D006592 ORTHO05D008122 0.0e+00 1088.9 556 96.4
Ca_22475_v3 Cicer arietinum L. HOM05D006592 ORTHO05D008122 1.9e-229 799.3 547 74.2
Glyma.16G075200 Glycine max HOM05D006592 ORTHO05D008122 9.5e-229 797.0 503 77.9
Medtr8g071820 Medicago truncatula HOM05D006592 ORTHO05D008122 4.4e-226 788.1 567 72.5
Phvul.003G276900 Phaseolus vulgaris HOM05D006592 ORTHO05D008122 2.3e-222 775.8 571 70.8
Lalb_Chr05g0229391 Lupinus albus HOM05D006592 ORTHO05D008122 1.1e-221 773.5 534 73.2
TPR.G16815 Trifolium pratense HOM05D006592 ORTHO05D008122 4.3e-221 771.5 536 73.5
QL02p100032 Quercus lobata HOM05D006592 ORTHO05D008122 1.0e-190 670.6 475 70.1
Prupe.2G060600 Prunus persica HOM05D006592 ORTHO05D008122 9.6e-189 664.1 532 62.0
Dinv37459 Davidia involucrata HOM05D006592 ORTHO05D008122 2.6e-186 656.0 485 68.0
Haze_08005 Corylus avellana HOM05D006592 ORTHO05D008122 1.1e-184 650.6 559 60.5
Potri.003G105100 Populus trichocarpa HOM05D006592 ORTHO05D008122 1.9e-184 649.8 540 62.4
Manes.17G005500 Manihot esculenta HOM05D006592 ORTHO05D008122 1.1e-181 640.6 504 64.1
Sabra03G0072100 Salix brachista HOM05D006592 ORTHO05D008122 1.5e-181 640.2 538 61.9
MD07G1026800 Malus domestica HOM05D006592 ORTHO05D008122 3.3e-181 639.0 514 60.7
GSVIVG01036935001 Vitis vinifera HOM05D006592 ORTHO05D008122 9.0e-179 630.9 539 60.3
TAR622G1375 Trochodendron aralioides HOM05D006592 ORTHO05D008122 5.8e-178 628.2 492 64.2
VMungo0251G2096 Vigna mungo HOM05D006592 ORTHO05D008122 5.8e-178 628.2 524 65.3
CiPaw.11G105000 Carya illinoinensis HOM05D006592 ORTHO05D008122 1.7e-177 626.7 461 67.2
Atru.chr6.2117 Acer truncatum HOM05D006592 ORTHO05D008122 4.2e-176 622.1 498 61.6
FvH4_3g41920 Fragaria vesca HOM05D006592 ORTHO05D008122 3.5e-175 619.0 502 61.8
FAN25G1190 Fragaria x ananassa HOM05D006592 ORTHO05D008122 1.8e-174 616.7 506 61.7
FAN11G2031 Fragaria x ananassa HOM05D006592 ORTHO05D008122 2.3e-174 616.3 502 61.8
RcHm_v2.0_Chr1g0331171 Rosa chinensis HOM05D006592 ORTHO05D008122 8.7e-174 614.4 473 64.5
CsaV3_4G037940 Cucumis sativus L. HOM05D006592 ORTHO05D008122 1.1e-173 614.0 471 63.3
Hma1.2p1_1256F.1_g270670 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 7.4e-173 611.3 493 63.1
ClCG11G016240 Citrullus lanatus HOM05D006592 ORTHO05D008122 8.1e-172 607.8 509 59.7
Aqoxy7G04139 Aquilegia oxysepala HOM05D006592 ORTHO05D008122 1.4e-171 607.1 418 67.9
MELO3C010544.2 Cucumis melo HOM05D006592 ORTHO05D008122 1.4e-171 607.1 471 62.6
FAN21G3043 Fragaria x ananassa HOM05D006592 ORTHO05D008122 3.1e-171 605.9 506 61.3
TWI60G0674 Tripterygium wilfordii HOM05D006592 ORTHO05D008122 3.4e-170 602.4 550 57.3
vmacro05080 Vaccinium macrocarpon HOM05D006592 ORTHO05D008122 4.5e-170 602.1 531 57.4
Actinidia29329 Actinidia chinensis HOM05D006592 ORTHO05D008122 9.3e-168 594.3 546 58.1
Duzib084G0624 Durio zibethinus HOM05D006592 ORTHO05D008122 1.6e-167 593.6 474 62.7
Thecc.03G323800 Theobroma cacao HOM05D006592 ORTHO05D008122 2.3e-166 589.7 415 68.2
Rhsim07G0174700 Rhododendron simsii HOM05D006592 ORTHO05D008122 3.0e-166 589.3 445 62.9
DCAR_028262 Daucus carota HOM05D006592 ORTHO05D008122 8.2e-164 581.3 482 59.8
PSO063G4459 Papaver somniferum HOM05D006592 ORTHO05D008122 1.8e-163 580.1 476 60.3
PSO782G0843 Papaver somniferum HOM05D006592 ORTHO05D008122 1.8e-163 580.1 476 60.3
THA.LOC104814375 Tarenaya hassleriana HOM05D006592 ORTHO05D008122 1.8e-163 580.1 471 62.2
HanXRQChr13g0411871 Helianthus annuus HOM05D006592 ORTHO05D008122 3.1e-163 579.3 470 60.9
Gorai.004G175600 Gossypium raimondii HOM05D006592 ORTHO05D008122 5.0e-161 572.0 415 64.1
Eucgr.E01202 Eucalyptus grandis HOM05D006592 ORTHO05D008122 1.1e-160 570.9 478 59.6
Gohir.D08G168300 Gossypium hirsutum HOM05D006592 ORTHO05D008122 4.2e-160 568.9 415 63.6
Solyc08g005860.3 Solanum lycopersicum HOM05D006592 ORTHO05D008122 2.1e-159 566.6 470 59.4
Peaxi162Scf00045g01236 Petunia axillaris HOM05D006592 ORTHO05D008122 2.7e-159 566.2 527 55.6
PGR042G2051 Punica granatum HOM05D006592 ORTHO05D008122 3.6e-159 565.8 404 64.4
PGSC0003DMG400024141 Solanum tuberosum HOM05D006592 ORTHO05D008122 6.1e-159 565.1 489 58.5
Nitab4.5_0004477g0030 Nicotiana tabacum HOM05D006592 ORTHO05D008122 3.9e-158 562.4 536 54.7
EL10Ac5g11887 Beta vulgaris HOM05D006592 ORTHO05D008122 6.7e-158 561.6 471 58.8
Zm00001eb430350 Zea mays HOM05D006592 ORTHO05D008122 1.9e-157 560.1 407 62.7
Sopen08g001820 Solanum pennellii HOM05D006592 ORTHO05D008122 9.7e-157 557.8 470 58.7
SalBow8G1786 Salvia bowleyana HOM05D006592 ORTHO05D008122 1.3e-156 557.4 435 59.8
CAN.G561.14 Capsicum annuum HOM05D006592 ORTHO05D008122 1.6e-156 557.0 470 58.5
Lsat_1_v5_gn_5_55220 Lactuca sativa HOM05D006592 ORTHO05D008122 1.6e-156 557.0 469 59.3
SalBow8G4832 Salvia bowleyana HOM05D006592 ORTHO05D008122 3.7e-156 555.8 512 54.1
CDE11G0624 Ceratophyllum demersum HOM05D006592 ORTHO05D008122 3.1e-155 552.7 532 53.6
Cc00_g08640 Coffea canephora HOM05D006592 ORTHO05D008122 9.1e-155 551.2 431 61.3
Glyma.16G106500 Glycine max HOM05D006592 ORTHO05D008122 1.5e-154 550.4 305 85.2
Nitab4.5_0000063g0390 Nicotiana tabacum HOM05D006592 ORTHO05D008122 3.4e-154 549.3 539 54.4
Thhalv10007328m.g Eutrema salsugineum HOM05D006592 ORTHO05D008122 2.9e-153 546.2 477 57.7
ATR0829G075 Amborella trichopoda HOM05D006592 ORTHO05D008122 6.5e-153 545.0 411 60.8
Sp1g27210 Schrenkiella parvula HOM05D006592 ORTHO05D008122 6.5e-153 545.0 475 57.9
COL.COLO4_16712 Corchorus olitorius HOM05D006592 ORTHO05D008122 1.9e-152 543.5 389 66.1
Carub.0001s2983 Capsella rubella HOM05D006592 ORTHO05D008122 1.6e-151 540.4 471 57.5
Oeu028120.2 Olea europaea HOM05D006592 ORTHO05D008122 1.6e-151 540.4 563 52.4
AT1G31410 Arabidopsis thaliana HOM05D006592 ORTHO05D008122 2.1e-151 540.0 468 57.9
Aa31LG2G14540 Aethionema arabicum HOM05D006592 ORTHO05D008122 3.6e-151 539.3 494 55.9
AUR62007438 Chenopodium quinoa HOM05D006592 ORTHO05D008122 1.4e-150 537.3 471 56.7
BcaB03g13796 Brassica carinata HOM05D006592 ORTHO05D008122 2.0e-149 533.5 470 57.4
AL1G49640 Arabidopsis lyrata HOM05D006592 ORTHO05D008122 2.6e-149 533.1 471 57.5
Migut.E01392 Erythranthe guttata HOM05D006592 ORTHO05D008122 5.7e-149 531.9 439 57.9
Ah.02g117360 Amaranthus hybridus HOM05D006592 ORTHO05D008122 3.7e-148 529.3 471 54.8
SGA_v2.0_scaffold144G35824 Striga asiatica HOM05D006592 ORTHO05D008122 3.7e-148 529.3 437 57.0
C07p14480 Brassica napus HOM05D006592 ORTHO05D008122 4.1e-147 525.8 473 57.5
Psat4g109400 Pisum sativum HOM05D006592 ORTHO05D008122 6.9e-147 525.0 297 83.5
BraA07t28736Z Brassica rapa HOM05D006592 ORTHO05D008122 1.2e-146 524.2 473 57.5
A07p09410 Brassica napus HOM05D006592 ORTHO05D008122 2.6e-146 523.1 468 56.8
ECA240G2178 Erigeron canadensis HOM05D006592 ORTHO05D008122 4.5e-146 522.3 485 56.5
BolC7t41947H Brassica oleracea HOM05D006592 ORTHO05D008122 5.9e-146 521.9 470 57.0
Hund14317 Selenicereus undatus HOM05D006592 ORTHO05D008122 2.9e-145 519.6 585 48.7
Os04g0602200 Oryza sativa ssp. japonica HOM05D006592 ORTHO05D008122 1.6e-135 487.3 362 60.5
unitig_899.g15474 Utricularia gibba HOM05D006592 ORTHO05D008122 8.8e-134 481.5 441 54.6
Hma1.2p1_1046F.1_g251540 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 2.2e-124 450.3 293 72.7
SMO244G0026 Selaginella moellendorffii HOM05D006592 ORTHO05D008122 7.2e-120 435.3 389 51.4
AagrBONN_evm.TU.Sc2ySwM_344.4668 Anthoceros agrestis HOM05D006592 ORTHO05D008122 9.8e-117 424.9 461 46.4
Gohir.A08G147100 Gossypium hirsutum HOM05D006592 ORTHO05D008122 7.8e-114 415.2 296 65.9
Mapoly0006s0240 Marchantia polymorpha HOM05D006592 ORTHO05D008122 2.9e-113 413.3 442 47.5
Lj4g0008520 Lotus japonicus HOM05D006592 ORTHO05D008122 3.8e-113 412.9 242 83.9
Pp3c1_19230 Physcomitrium patens HOM05D006592 ORTHO05D008122 3.3e-112 409.8 410 47.3
Sc01g0005980 Simmondsia chinensis HOM05D006592 ORTHO05D008122 4.6e-106 389.4 283 66.8
Nn1g09214 Nelumbo nucifera HOM05D006592 ORTHO05D008122 7.8e-106 388.7 572 44.2
CARHR030900 Cardamine hirsuta HOM05D006592 ORTHO05D008122 1.2e-101 374.8 288 63.9
MBI04_g30774_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 3.2e-99 366.7 571 41.0
CSS0028407 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 4.0e-94 349.7 261 66.3
AUR62027300 Chenopodium quinoa HOM05D006592 ORTHO05D008122 4.6e-90 336.3 471 40.6
HPP92_015141 Vanilla planifolia HOM05D006592 ORTHO05D008122 1.0e-89 335.1 220 68.2
CBR_g19872 Chara braunii HOM05D006592 ORTHO05D008122 1.3e-89 334.7 369 45.8
CBR_g37675 Chara braunii HOM05D006592 ORTHO05D008122 3.0e-89 333.6 381 44.1
Lj8A380T21 Lonicera japonica HOM05D006592 ORTHO05D008122 2.8e-87 327.0 231 66.2
CSS0043715 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 1.2e-85 321.6 246 65.0
Glyma.16G106700 Glycine max HOM05D006592 ORTHO05D008122 2.1e-71 274.2 268 63.1
Lj4g0015969 Lotus japonicus HOM05D006592 ORTHO05D008122 2.8e-71 273.9 262 61.1
CANSAT11G2102 Cannabis sativa HOM05D006592 ORTHO05D008122 9.0e-70 268.9 288 51.7
Sed0001244 Sechium edule HOM05D006592 ORTHO05D008122 9.9e-69 265.4 494 34.6
Psat4g134920 Pisum sativum HOM05D006592 ORTHO05D008122 7.4e-64 249.2 264 56.8
CSS0050204 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 1.2e-61 241.9 168 66.7
Cre06.g292100 Chlamydomonas reinhardtii HOM05D006592 ORTHO05D008122 7.9e-58 229.2 317 38.8
AagrBONN_evm.TU.Sc2ySwM_117.3387 Anthoceros agrestis HOM05D006592 ORTHO05D008122 1.3e-44 185.3 329 32.2
Cpa.g.sc137.28 Carica papaya HOM05D006592 ORTHO05D008122 4.2e-43 180.3 183 52.5
Cpa.g.sc137.29 Carica papaya HOM05D006592 ORTHO05D008122 6.3e-39 166.4 103 78.6
MCO09G637 Micromonas commoda HOM05D006592 ORTHO05D008122 5.3e-38 163.3 382 28.0
Sc01g0005990 Simmondsia chinensis HOM05D006592 ORTHO05D008122 1.5e-37 161.8 263 41.8
PRCOL_00001501 Prasinoderma coloniale HOM05D006592 ORTHO05D008122 4.7e-34 150.2 352 30.1
MBI14_g31659_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 2.6e-32 144.4 99 72.7
SEGI_06764 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 7.0e-30 136.3 141 49.6
MBI02_g32478_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 2.1e-26 124.8 91 68.1
Ciclev10004057m.g Citrus clementina HOM05D006592 ORTHO05D008122 1.8e-22 111.7 98 55.1
Zm00001eb071790 Zea mays HOM05D006592 ORTHO05D008122 7.0e-22 109.8 205 35.6
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 2.2e-15 88.2 63 61.9
Dinv37458 Davidia involucrata HOM05D000040 ORTHO05D000267 1.1e-14 85.9 66 68.2
C08p16710 Brassica napus HOM05D006592 ORTHO05D008122 4.7e-10 70.5 35 74.3
Hma1.2p1_1046F.1_g251530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 5.2e-09 67.0 41 68.3


User provided reference genes

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