Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 6.7e-193 677.2 339 100.0
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 1.3e-172 609.8 306 99.7
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 9.7e-168 593.6 306 96.4
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 3.1e-134 482.3 333 76.3
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 1.3e-111 407.1 314 66.2
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 5.1e-108 395.2 306 66.7
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 1.9e-107 393.3 316 64.2
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 2.4e-105 386.3 314 63.1
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 7.1e-102 374.8 311 62.1
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 2.5e-99 366.3 263 69.6
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 1.1e-97 360.9 286 66.1
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 1.2e-96 357.5 275 65.8
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 1.0e-92 344.4 292 62.7
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 2.2e-87 326.6 286 62.9
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 3.2e-78 296.2 329 49.8
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 1.3e-76 290.8 242 62.4
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 1.9e-75 287.0 320 50.9
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 1.9e-70 270.4 302 47.7
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 2.7e-69 266.5 318 46.9
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 1.0e-68 264.6 272 52.2
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 1.1e-67 261.2 325 47.1
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 1.5e-67 260.8 239 56.5
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 3.3e-67 259.6 280 51.4
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.3e-67 259.6 323 44.6
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 5.7e-67 258.8 304 45.4
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 3.7e-66 256.1 306 46.1
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 6.3e-66 255.4 327 46.5
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 1.1e-65 254.6 300 46.7
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.1e-65 254.6 323 44.0
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.1e-65 254.6 323 44.0
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 1.8e-65 253.8 294 49.7
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 2.4e-65 253.4 297 48.1
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 5.3e-65 252.3 313 45.4
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 6.9e-65 251.9 289 47.1
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 9.0e-65 251.5 323 43.3
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 9.0e-65 251.5 323 43.3
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 2.0e-64 250.4 275 48.4
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 4.5e-64 249.2 323 43.0
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 4.5e-64 249.2 304 44.1
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 7.7e-64 248.4 269 52.0
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 1.2e-61 241.1 307 45.9
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 2.7e-61 240.0 295 46.4
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.4e-60 237.7 258 48.8
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 2.3e-60 236.9 265 47.5
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 5.1e-60 235.7 301 44.5
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 8.8e-60 235.0 283 47.3
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 8.8e-60 235.0 301 44.5
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.5e-59 234.2 292 45.5
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 2.5e-59 233.4 300 40.7
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.7e-58 230.7 269 47.2
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 4.8e-58 229.2 288 45.1
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 6.3e-58 228.8 328 42.4
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 1.8e-57 227.3 269 46.8
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 2.4e-57 226.9 269 46.5
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 9.1e-57 224.9 301 41.2
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 1.2e-56 224.6 288 45.1
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.5e-56 224.2 264 45.8
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 4.5e-56 222.6 255 47.8
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 5.9e-56 222.2 233 50.6
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 7.7e-56 221.9 291 43.0
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 3.8e-55 219.5 263 46.0
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 3.8e-55 219.5 263 46.0
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 3.8e-55 219.5 263 46.0
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 8.5e-55 218.4 250 46.4
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 1.1e-54 218.0 244 49.2
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.2e-53 214.5 255 46.7
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.2e-53 214.5 288 44.4
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 2.1e-53 213.8 285 43.9
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 2.1e-53 213.8 269 44.2
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 2.7e-53 213.4 290 41.0
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 3.6e-53 213.0 261 45.6
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 5.1e-52 209.1 288 42.0
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 5.1e-52 209.1 286 45.5
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 6.7e-52 208.8 264 42.0
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 6.7e-52 208.8 252 46.0
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 8.8e-52 208.4 305 41.6
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 2.6e-51 206.8 266 44.7
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 1.3e-50 204.5 268 43.3
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 2.8e-50 203.4 292 42.8
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 2.8e-50 203.4 293 41.0
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 3.7e-50 203.0 279 42.7
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 1.1e-49 201.4 287 40.8
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 1.1e-49 201.4 285 40.7
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 1.8e-49 200.7 304 41.4
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 1.8e-49 200.7 262 44.3
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 1.2e-48 198.0 264 41.3
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 2.0e-48 197.2 209 50.7
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 2.0e-48 197.2 309 40.5
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 3.5e-48 196.4 283 42.4
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 4.5e-48 196.1 280 40.4
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 7.7e-48 195.3 280 41.8
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.9e-47 193.4 255 40.8
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 6.5e-47 192.2 264 42.4
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 1.1e-46 191.4 288 40.6
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 2.5e-46 190.3 291 39.5
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 4.2e-46 189.5 264 44.3
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.4e-46 188.3 256 41.0
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 4.7e-45 186.0 268 42.9
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.7e-45 186.0 246 40.7
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.7e-45 186.0 246 40.7
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.7e-45 186.0 265 39.6
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.1e-45 185.7 246 40.7
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.0e-45 185.3 246 40.2
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.0e-45 185.3 246 40.7
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.0e-45 185.3 246 40.2
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 1.4e-44 184.5 266 41.0
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 1.4e-44 184.5 266 41.0
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 1.8e-44 184.1 267 40.8
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 1.8e-44 184.1 267 40.8
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.8e-44 184.1 246 40.2
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.8e-44 184.1 246 40.2
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 8.8e-44 181.8 167 53.9
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 1.1e-43 181.4 267 40.1
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.3e-43 179.9 246 39.8
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 9.7e-43 178.3 184 54.9
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.8e-42 176.8 233 42.1
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 3.7e-42 176.4 255 40.8
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 8.2e-42 175.3 258 40.7
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 1.7e-39 167.5 250 40.8
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.2e-39 167.2 156 57.7
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 2.7e-37 160.2 290 37.9
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 4.7e-37 159.5 244 41.4
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.4e-36 157.9 247 38.1
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.8e-36 157.5 244 40.6
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 6.7e-36 155.6 274 36.5
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.3e-34 151.4 208 39.9
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-33 148.3 186 41.9
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.1e-33 146.4 213 39.9
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 2.7e-32 143.7 203 41.4
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.5e-32 143.3 167 44.3
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.9e-31 140.2 167 43.7
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.2e-29 134.8 306 32.4
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 2.2e-26 124.0 207 37.7
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.6e-24 117.9 143 43.4
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.0e-24 117.5 145 42.1
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.7e-23 114.4 127 52.0
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.8e-21 107.1 135 40.7
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 2.6e-19 100.5 204 35.3
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 3.4e-19 100.1 206 31.6
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 8.3e-18 95.5 103 47.6
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 7.8e-16 89.0 188 32.4
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 2.0e-11 74.3 151 32.5
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 1.9e-09 67.8 67 49.3
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 7.8e-08 62.4 92 32.6
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-06 57.8 90 34.4


User provided reference genes

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