Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 5.2e-154 548.9 639 100.0
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.9e-149 533.1 639 98.7
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 4.3e-76 290.0 637 80.8
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 5.3e-58 229.9 602 76.7
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 8.8e-53 212.6 639 67.6
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 4.4e-44 183.7 638 72.1
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 1.2e-36 159.1 640 71.9
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 3.2e-31 141.0 628 72.0
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 9.4e-31 139.4 621 72.9
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 1.2e-30 139.0 194 67.5
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 1.6e-30 138.7 624 69.9
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 2.1e-30 138.3 625 67.4
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 2.6e-28 131.3 247 55.5
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 3.4e-28 131.0 242 35.5
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 9.8e-28 129.4 204 64.7
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 2.8e-27 127.9 242 44.2
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 2.8e-27 127.9 251 54.2
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 4.8e-27 127.1 242 47.5
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 6.3e-27 126.7 235 43.0
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.1e-26 125.9 232 57.8
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 3.1e-26 124.4 220 45.5
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 3.1e-26 124.4 232 58.2
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 4.1e-26 124.0 625 57.4
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 5.4e-26 123.6 242 56.6
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 7.0e-26 123.2 216 62.5
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 7.0e-26 123.2 204 52.0
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 1.2e-25 122.5 186 67.2
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.6e-25 122.1 199 63.8
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 2.0e-25 121.7 198 51.0
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 2.0e-25 121.7 186 63.4
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 2.7e-25 121.3 232 57.3
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 4.5e-25 120.6 186 64.0
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 5.9e-25 120.2 186 66.1
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 5.9e-25 120.2 232 57.3
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 1.0e-24 119.4 232 57.8
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 1.3e-24 119.0 221 43.9
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 1.7e-24 118.6 201 62.2
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.3e-24 118.2 186 65.6
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 2.3e-24 118.2 220 59.1
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.9e-24 117.9 186 65.6
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 2.9e-24 117.9 230 58.7
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 5.0e-24 117.1 194 64.4
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 5.0e-24 117.1 194 64.4
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 6.5e-24 116.7 230 55.7
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 5.5e-23 113.6 188 42.6
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 5.5e-23 113.6 239 53.6
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 1.2e-22 112.5 188 36.2
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 1.2e-22 112.5 221 57.0
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 1.6e-22 112.1 234 55.1
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 2.1e-22 111.7 188 35.6
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 2.1e-22 111.7 235 56.2
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 2.1e-22 111.7 224 57.6
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 4.7e-22 110.5 230 32.6
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 4.7e-22 110.5 226 56.2
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 6.1e-22 110.2 247 51.8
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 6.1e-22 110.2 196 41.3
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 8.0e-22 109.8 227 33.0
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 1.8e-21 108.6 203 60.6
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 2.3e-21 108.2 194 61.9
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 3.0e-21 107.8 216 58.8
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 6.8e-21 106.7 203 60.1
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 8.9e-21 106.3 188 35.6
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 1.2e-20 105.9 233 54.5
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 1.2e-20 105.9 210 55.7
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 1.5e-20 105.5 219 57.5
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 1.5e-20 105.5 203 60.6
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 1.5e-20 105.5 249 53.8
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 1.5e-20 105.5 191 58.6
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 2.0e-20 105.1 178 66.9
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 2.6e-20 104.8 195 61.0
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 3.4e-20 104.4 634 64.0
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 4.4e-20 104.0 190 61.1
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 9.8e-20 102.8 188 60.1
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 9.8e-20 102.8 188 60.1
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 9.8e-20 102.8 236 56.8
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 9.8e-20 102.8 249 53.4
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 1.3e-19 102.4 188 58.0
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 1.3e-19 102.4 186 63.4
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 1.7e-19 102.1 233 53.6
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 2.2e-19 101.7 202 59.4
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 4.9e-19 100.5 180 65.6
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 4.9e-19 100.5 221 52.9
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 4.9e-19 100.5 221 52.9
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 4.9e-19 100.5 221 52.9
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 4.9e-19 100.5 186 60.8
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 4.9e-19 100.5 186 60.8
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 6.3e-19 100.1 232 54.7
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 8.3e-19 99.8 216 55.6
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.1e-18 99.4 249 52.2
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 1.1e-18 99.4 186 62.4
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 1.4e-18 99.0 186 62.4
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 1.4e-18 99.0 203 55.2
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 2.4e-18 98.2 193 60.1
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 2.4e-18 98.2 186 60.8
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 3.1e-18 97.8 242 49.6
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 4.1e-18 97.4 200 59.0
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 4.1e-18 97.4 208 58.2
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 7.0e-18 96.7 186 61.3
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 7.0e-18 96.7 186 59.1
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 1.2e-17 95.9 186 61.3
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 1.2e-17 95.9 186 61.3
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 1.2e-17 95.9 186 61.3
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 1.2e-17 95.9 186 61.8
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 1.2e-17 95.9 236 51.7
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 1.2e-17 95.9 165 67.9
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 1.6e-17 95.5 186 61.3
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 1.6e-17 95.5 186 61.3
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 1.6e-17 95.5 186 59.1
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 1.6e-17 95.5 225 54.2
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 2.0e-17 95.1 203 57.1
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 2.0e-17 95.1 193 60.1
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 2.7e-17 94.7 167 67.1
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 3.5e-17 94.4 189 60.3
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.5e-17 94.4 191 60.7
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 3.5e-17 94.4 190 60.0
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 4.5e-17 94.0 185 59.5
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 5.9e-17 93.6 182 61.5
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 5.9e-17 93.6 194 58.8
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 7.8e-17 93.2 228 53.1
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 1.0e-16 92.8 202 59.4
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 1.0e-16 92.8 221 54.3
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 1.7e-16 92.0 112 43.8
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 1.7e-16 92.0 242 52.9
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 1.7e-16 92.0 176 63.6
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 2.3e-16 91.7 185 60.0
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 2.3e-16 91.7 93 48.4
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 2.9e-16 91.3 178 64.0
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.8e-16 90.9 228 52.6
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 3.8e-16 90.9 239 27.2
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 5.0e-16 90.5 83 53.0
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 5.0e-16 90.5 204 56.9
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 8.6e-16 89.7 82 54.9
MBI04_g43860_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 8.6e-16 89.7 148 37.8
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 1.1e-15 89.4 144 39.6
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.5e-15 89.0 91 46.2
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 1.9e-15 88.6 189 59.3
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.9e-15 88.6 189 59.3
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 4.3e-15 87.4 89 44.9
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 9.5e-15 86.3 169 33.1
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 9.5e-15 86.3 102 47.1
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 2.1e-14 85.1 166 66.9
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.8e-14 84.7 207 56.0
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 3.6e-14 84.3 167 64.1
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 4.7e-14 84.0 221 51.6
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 8.0e-14 83.2 204 56.4
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 1.0e-13 82.8 234 51.7
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 1.4e-13 82.4 167 64.7
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 6.8e-13 80.1 78 50.0
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 1.2e-12 79.3 113 43.4
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 2.0e-12 78.6 186 52.7
Potri.006G242600 Populus trichocarpa HOM05D003689 ORTHO05D003950 2.6e-12 78.2 147 36.7
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 2.6e-12 78.2 75 49.3
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 2.6e-12 78.2 156 33.3
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 3.4e-12 77.8 191 52.4
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 7.5e-12 76.6 186 54.3
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 7.5e-12 76.6 67 58.2
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 9.8e-12 76.3 186 54.3
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 1.3e-11 75.9 104 41.3
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 1.7e-11 75.5 167 62.9
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 1.7e-11 75.5 222 49.5
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 3.7e-11 74.3 85 43.5
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 4.9e-11 73.9 230 49.1
MD15G1097800 Malus domestica HOM05D003689 ORTHO05D003950 1.4e-10 72.4 116 40.5
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 1.9e-10 72.0 64 54.7
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 1.9e-10 72.0 204 52.0
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 1.9e-10 72.0 204 52.0
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 3.2e-10 71.2 74 45.9
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 5.4e-10 70.5 241 47.7
Lj8C603T17 Lonicera japonica HOM05D003689 ORTHO05D003950 5.4e-10 70.5 72 48.6
EL10Ac8g18468 Beta vulgaris HOM05D003689 ORTHO05D003950 9.2e-10 69.7 171 29.8
Cpa.g.sc78.81 Carica papaya HOM05D003689 ORTHO05D003950 6.0e-09 67.0 143 35.0
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 1.3e-08 65.9 199 52.3
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 3.9e-08 64.3 117 30.8
EL10Ac8g18465 Beta vulgaris HOM05D003689 ORTHO05D003950 5.6e-07 60.5 186 48.4
EL10Ac8g18466 Beta vulgaris HOM05D003689 ORTHO05D003950 5.6e-07 60.5 186 48.4
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 5.6e-07 60.5 52 50.0
Cpa.g.sc78.82 Carica papaya HOM05D003689 ORTHO05D003950 5.6e-07 60.5 48 56.2
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 9.5e-07 59.7 73 43.8
Nn8g39148 Nelumbo nucifera HOM05D003689 ORTHO05D003950 1.6e-06 58.9 109 37.6
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 2.1e-06 58.5 47 55.3
Os01g0228400 Oryza sativa ssp. japonica HOM05D003689 ORTHO05D003950 8.0e-06 56.6 133 30.1


User provided reference genes

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