Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6BLG7S Arachis hypogaea HOM05D003201 ORTHO05D008914 1.6e-174 615.9 302 100.0
arahy.Tifrunner.gnm1.ann1.N5J460 Arachis hypogaea HOM05D003201 ORTHO05D008914 1.3e-171 606.3 309 97.1
Glyma.04G077000 Glycine max HOM05D003201 ORTHO05D008914 3.8e-123 445.3 302 73.2
Glyma.06G078200 Glycine max HOM05D003201 ORTHO05D008914 1.3e-118 430.3 302 70.9
TPR.G12401 Trifolium pratense HOM05D003201 ORTHO05D008914 5.9e-116 421.4 302 71.2
Psat5g023760 Pisum sativum HOM05D003201 ORTHO05D008914 9.4e-114 414.1 305 69.2
Lj1g0010900 Lotus japonicus HOM05D003201 ORTHO05D008914 3.0e-112 409.1 303 69.6
Lalb_Chr11g0064231 Lupinus albus HOM05D003201 ORTHO05D008914 1.5e-111 406.8 300 69.7
VMungo1309G0938 Vigna mungo HOM05D003201 ORTHO05D008914 3.3e-111 405.6 375 58.4
Ca_15643_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000219 8.2e-102 374.4 289 65.4
CiPaw.07G210300 Carya illinoinensis HOM05D003201 ORTHO05D008914 5.2e-96 355.1 304 59.2
Duzib084G1420 Durio zibethinus HOM05D003201 ORTHO05D008914 5.2e-96 355.1 306 60.1
Phvul.009G102800 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 3.4e-95 352.4 226 74.3
Cpa.g.sc30.52 Carica papaya HOM05D003201 ORTHO05D008914 1.7e-94 350.1 303 57.1
GSVIVG01035604001 Vitis vinifera HOM05D003201 ORTHO05D008914 1.4e-93 347.1 305 57.4
QL12p025722 Quercus lobata HOM05D003201 ORTHO05D008914 3.1e-93 345.9 303 58.4
Manes.02G219100 Manihot esculenta HOM05D003201 ORTHO05D008914 3.5e-92 342.4 307 55.7
MELO3C011176.2 Cucumis melo HOM05D003201 ORTHO05D008914 5.0e-91 338.6 300 57.7
Thecc.03G318200 Theobroma cacao HOM05D003201 ORTHO05D008914 5.0e-91 338.6 300 57.7
CANSAT54G1971 Cannabis sativa HOM05D003201 ORTHO05D008914 2.5e-90 336.3 307 56.4
ClCG08G012570 Citrullus lanatus HOM05D003201 ORTHO05D008914 7.2e-90 334.7 301 57.1
CsaV3_2G031270 Cucumis sativus L. HOM05D003201 ORTHO05D008914 3.6e-89 332.4 302 56.3
CSS0009288 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 8.0e-89 331.3 305 54.4
CSS0050223 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 1.0e-88 330.9 305 54.4
CAN.G964.23 Capsicum annuum HOM05D003201 ORTHO05D008914 1.4e-88 330.5 300 54.7
Gohir.D12G205000 Gossypium hirsutum HOM05D003201 ORTHO05D008914 1.4e-88 330.5 301 56.1
Gorai.008G219900 Gossypium raimondii HOM05D003201 ORTHO05D008914 3.0e-88 329.3 304 54.9
Nitab4.5_0000391g0210 Nicotiana tabacum HOM05D003201 ORTHO05D008914 3.0e-88 329.3 303 53.8
Hund03239 Selenicereus undatus HOM05D003201 ORTHO05D008914 8.8e-88 327.8 302 55.0
Sopen05g007740 Solanum pennellii HOM05D003201 ORTHO05D008914 1.5e-87 327.0 299 53.5
Solyc05g012940.4 Solanum lycopersicum HOM05D003201 ORTHO05D008914 2.6e-87 326.2 299 53.5
Gohir.A12G202300 Gossypium hirsutum HOM05D003201 ORTHO05D008914 3.4e-87 325.9 301 55.5
Peaxi162Scf00314g00636 Petunia axillaris HOM05D003201 ORTHO05D008914 4.4e-87 325.5 305 54.8
Migut.E00069 Erythranthe guttata HOM05D003201 ORTHO05D008914 9.8e-87 324.3 312 55.8
Nitab4.5_0012553g0020 Nicotiana tabacum HOM05D003201 ORTHO05D008914 1.7e-86 323.6 303 53.5
PGSC0003DMG402028340 Solanum tuberosum HOM05D003201 ORTHO05D008914 2.2e-86 323.2 303 55.1
Actinidia29333 Actinidia chinensis HOM05D003201 ORTHO05D008914 1.4e-85 320.5 299 53.8
Aqoxy7G00979 Aquilegia oxysepala HOM05D003201 ORTHO05D008914 2.4e-85 319.7 308 54.5
EL10Ac8g19259 Beta vulgaris HOM05D003201 ORTHO05D008914 2.4e-85 319.7 302 54.3
FvH4_2g36540 Fragaria vesca HOM05D003201 ORTHO05D008914 2.4e-85 319.7 306 53.6
MD15G1105100 Malus domestica HOM05D003201 ORTHO05D008914 4.1e-85 318.9 305 53.4
SalBow8G4280 Salvia bowleyana HOM05D003201 ORTHO05D008914 4.1e-85 318.9 300 52.7
AUR62028026 Chenopodium quinoa HOM05D003201 ORTHO05D008914 7.7e-84 314.7 306 52.0
Eucgr.E04307 Eucalyptus grandis HOM05D003201 ORTHO05D008914 1.0e-83 314.3 302 55.6
BcaNung03501 Brassica carinata HOM05D003201 ORTHO05D008914 1.3e-83 313.9 302 53.0
C07p50860 Brassica napus HOM05D000936 ORTHO05D008914 1.3e-83 313.9 302 53.0
RcHm_v2.0_Chr6g0305311 Rosa chinensis HOM05D003201 ORTHO05D008914 1.3e-83 313.9 306 52.3
FAN15G0760 Fragaria x ananassa HOM05D003201 ORTHO05D008914 1.7e-83 313.5 304 53.3
Prupe.1G456900 Prunus persica HOM05D003201 ORTHO05D008914 1.7e-83 313.5 300 53.7
BcaC06g30651 Brassica carinata HOM05D003201 ORTHO05D008914 3.8e-83 312.4 298 53.7
SGA_v2.0_scaffold45G16974 Striga asiatica HOM05D003201 ORTHO05D008914 3.8e-83 312.4 299 51.5
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 8.6e-83 311.2 300 53.7
HanXRQChr15g0468831 Helianthus annuus HOM05D003201 ORTHO05D008914 1.5e-82 310.5 303 51.5
TWI18G0285 Tripterygium wilfordii HOM05D003201 ORTHO05D008914 1.5e-82 310.5 271 57.9
AT4G20325 Arabidopsis thaliana HOM05D003201 ORTHO05D008914 1.9e-82 310.1 298 53.0
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 1.9e-82 310.1 301 52.5
Ciclev10016172m.g Citrus clementina HOM05D003201 ORTHO05D008914 2.5e-82 309.7 307 53.1
DCAR_002183 Daucus carota HOM05D003201 ORTHO05D008914 2.5e-82 309.7 303 54.1
Dinv37468 Davidia involucrata HOM05D003201 ORTHO05D008914 4.2e-82 308.9 233 63.5
BraA03t14319Z Brassica rapa HOM05D003201 ORTHO05D008914 5.6e-82 308.5 298 53.7
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 7.2e-82 308.1 299 52.2
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 9.5e-82 307.8 255 62.0
A03p52400 Brassica napus HOM05D000936 ORTHO05D008914 1.2e-81 307.4 302 52.6
BolC7t45584H Brassica oleracea HOM05D000936 ORTHO05D008914 1.2e-81 307.4 298 52.0
AL7G33570 Arabidopsis lyrata HOM05D003201 ORTHO05D008914 1.6e-81 307.0 298 53.0
CARHR227150 Cardamine hirsuta HOM05D003201 ORTHO05D008914 1.6e-81 307.0 305 52.5
Sp7g18670 Schrenkiella parvula HOM05D003201 ORTHO05D008914 1.6e-81 307.0 302 51.7
Carub.0007s2085 Capsella rubella HOM05D003201 ORTHO05D008914 2.1e-81 306.6 302 53.0
Thhalv10025951m.g Eutrema salsugineum HOM05D003201 ORTHO05D008914 3.6e-81 305.8 303 51.8
Cc11_g12550 Coffea canephora HOM05D003201 ORTHO05D008914 6.1e-81 305.1 308 52.6
THA.LOC104811993 Tarenaya hassleriana HOM05D003201 ORTHO05D008914 1.4e-80 303.9 300 52.3
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 4.0e-80 302.4 300 52.3
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 7.5e-79 298.1 296 51.0
PSO782G1293 Papaver somniferum HOM05D003201 ORTHO05D008914 2.2e-78 296.6 299 51.8
Atru.BG.264.p Acer truncatum HOM05D003201 ORTHO05D008914 2.9e-78 296.2 263 57.0
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 3.7e-78 295.8 292 50.7
PGR042G2091 Punica granatum HOM05D003201 ORTHO05D008914 3.5e-76 289.3 254 57.5
Lsat_1_v5_gn_5_73181 Lactuca sativa HOM05D003201 ORTHO05D008914 1.0e-75 287.7 287 50.5
FAN20G1097 Fragaria x ananassa HOM05D000163 ORTHO05D008914 2.8e-73 279.6 254 57.5
HPP92_024271 Vanilla planifolia HOM05D003201 ORTHO05D008914 4.7e-73 278.9 262 56.5
Rhsim07G0174100 Rhododendron simsii HOM05D003201 ORTHO05D008914 8.0e-73 278.1 399 41.9
BcaNung03722 Brassica carinata HOM05D000936 ORTHO05D001411 1.8e-72 276.9 303 49.2
AUR62020698 Chenopodium quinoa HOM05D003201 ORTHO05D008914 1.0e-67 261.2 302 47.0
ATR0686G110 Amborella trichopoda HOM05D003201 ORTHO05D008914 6.6e-67 258.5 243 53.9
Sc23g0004340 Simmondsia chinensis HOM05D003201 ORTHO05D008914 3.1e-64 249.6 231 54.1
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 5.8e-63 245.4 335 44.8
SEGI_35572 Sequoiadendron giganteum HOM05D003201 ORTHO05D008914 1.1e-61 241.1 274 46.0
vmacro05085 Vaccinium macrocarpon HOM05D003201 ORTHO05D008914 9.5e-58 228.0 525 32.2
TAR636G2614 Trochodendron aralioides HOM05D003201 ORTHO05D008914 1.1e-56 224.6 179 57.0
Sed0017242 Sechium edule HOM05D003201 ORTHO05D008914 4.4e-55 219.2 186 62.4
Potri.006G281101 Populus trichocarpa HOM05D003201 ORTHO05D008914 2.4e-53 213.4 189 56.1
FAN27G2114 Fragaria x ananassa HOM05D000163 ORTHO05D000219 2.1e-52 210.3 216 51.9
Mapoly0037s0034 Marchantia polymorpha HOM05D003201 ORTHO05D008914 6.8e-48 195.3 205 43.9
AagrBONN_evm.TU.Sc2ySwM_344.2003 Anthoceros agrestis HOM05D003201 ORTHO05D008914 5.8e-47 192.2 179 46.9
SMO115G0061 Selaginella moellendorffii HOM05D003201 ORTHO05D008914 9.3e-45 184.9 218 39.4
unitig_32.g11042 Utricularia gibba HOM05D003201 ORTHO05D008914 5.1e-43 179.1 213 44.1
Zm00001eb079750 Zea mays HOM05D003201 ORTHO05D008914 6.9e-40 168.7 186 50.0
SHI31610 Sapria himalayana HOM05D003201 ORTHO05D008914 1.7e-38 164.1 110 61.8
Pp3c10_22770 Physcomitrium patens HOM05D003201 ORTHO05D008914 2.9e-38 163.3 235 36.2
MD08G1125300 Malus domestica HOM05D003201 ORTHO05D008914 4.2e-29 132.9 123 52.8
CDE05G1961 Ceratophyllum demersum HOM05D003201 ORTHO05D008914 2.3e-27 127.1 141 52.5
Nn7g38306 Nelumbo nucifera HOM05D003201 ORTHO05D008914 3.9e-27 126.3 124 47.6
TPR.G12326 Trifolium pratense HOM05D003201 ORTHO05D008914 1.8e-24 117.5 72 79.2
Phvul.009G102700 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 6.5e-22 109.0 302 29.8
COL.COLO4_10365 Corchorus olitorius HOM05D003201 ORTHO05D008914 2.7e-20 103.6 76 64.5
Os04g0476400 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008914 3.0e-19 100.1 117 42.7
Hma1.2p1_1357F.1_g277905 Hydrangea macrophylla HOM05D003201 ORTHO05D008914 1.4e-16 91.3 92 48.9
CBR_g23989 Chara braunii HOM05D003201 ORTHO05D008914 1.2e-15 88.2 68 52.9
Cre07.g320800 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008914 1.0e-11 75.1 241 24.5
CBR_g23991 Chara braunii HOM05D003201 ORTHO05D008914 6.5e-06 55.8 41 53.7


User provided reference genes

Program Settings