Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 0.0e+00 1115.9 567 100.0
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 0.0e+00 1106.7 567 99.1
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 3.9e-270 934.5 564 83.0
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 1.4e-267 926.0 568 82.9
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 2.4e-267 925.2 565 81.8
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 3.8e-265 917.9 562 81.9
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 1.4e-259 899.4 570 81.1
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 4.2e-256 887.9 560 80.0
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 7.1e-256 887.1 565 80.4
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 5.4e-248 860.9 566 77.9
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 5.4e-248 860.9 551 78.0
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 9.3e-248 860.1 558 78.7
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 1.8e-238 829.3 565 73.6
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 7.4e-237 823.9 566 73.1
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 3.4e-234 815.1 568 73.2
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.1e-232 810.1 569 72.4
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 9.3e-232 807.0 562 71.9
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 2.7e-231 805.4 573 71.0
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 4.6e-231 804.7 563 72.8
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 6.0e-231 804.3 561 72.4
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 3.9e-230 801.6 560 72.0
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 5.1e-230 801.2 549 72.9
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 4.3e-229 798.1 563 71.6
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 9.7e-229 797.0 563 71.9
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 1.3e-228 796.6 556 72.8
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 2.2e-228 795.8 560 71.4
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 3.7e-228 795.0 548 71.7
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 1.1e-227 793.5 557 71.8
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 3.1e-227 792.0 547 72.9
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 1.5e-226 789.6 562 71.0
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.7e-225 786.2 543 72.0
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 2.9e-225 785.4 529 73.2
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.9e-224 782.7 572 69.8
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 4.2e-224 781.6 519 75.1
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 1.6e-223 779.6 571 69.2
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 6.1e-223 777.7 567 71.4
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 6.1e-223 777.7 556 72.1
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 1.0e-222 776.9 552 70.3
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 2.3e-222 775.8 573 69.6
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 3.0e-222 775.4 513 74.7
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.1e-221 773.5 572 69.4
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 1.5e-221 773.1 567 69.1
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 3.7e-220 768.5 556 70.9
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 4.8e-220 768.1 528 73.7
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 5.9e-218 761.1 521 72.6
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 7.7e-218 760.8 549 69.6
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 7.7e-218 760.8 519 72.8
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 1.0e-217 760.4 518 73.9
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 1.3e-217 760.0 535 72.1
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 2.2e-217 759.2 519 74.0
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 1.9e-216 756.1 564 68.6
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 2.5e-216 755.7 562 68.5
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 5.5e-216 754.6 537 70.4
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 7.2e-216 754.2 564 67.0
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 9.4e-216 753.8 544 70.4
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 3.6e-215 751.9 513 73.1
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 7.9e-215 750.7 547 68.4
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 1.8e-214 749.6 557 68.0
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 4.4e-213 745.0 557 67.5
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 7.4e-213 744.2 494 74.1
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 9.7e-213 743.8 546 67.8
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 1.7e-212 743.0 511 72.0
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 4.8e-212 741.5 502 73.3
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 6.3e-212 741.1 512 70.7
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 6.3e-212 741.1 562 67.6
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 1.1e-211 740.3 552 68.5
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 3.1e-211 738.8 578 65.1
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 2.0e-210 736.1 545 67.5
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 2.6e-210 735.7 551 69.3
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 3.5e-210 735.3 564 67.4
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 4.5e-210 734.9 513 70.2
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 7.7e-210 734.2 546 67.9
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 7.7e-210 734.2 545 68.4
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 1.0e-209 733.8 545 67.5
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 1.7e-209 733.0 525 69.3
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 2.2e-209 732.6 511 70.8
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 2.9e-209 732.3 535 68.2
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 5.0e-209 731.5 541 68.6
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 6.5e-209 731.1 545 67.3
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 6.5e-209 731.1 545 67.2
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 8.5e-209 730.7 521 71.8
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 2.1e-207 726.1 545 67.2
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 3.9e-206 721.8 578 64.4
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 6.7e-206 721.1 473 74.6
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 2.0e-205 719.5 520 68.8
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 5.7e-205 718.0 606 62.2
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 4.8e-204 714.9 511 69.3
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 1.4e-203 713.4 522 68.2
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 2.6e-202 709.1 424 78.1
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 4.5e-202 708.4 462 73.4
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 2.2e-201 706.1 536 66.8
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 3.8e-201 705.3 534 68.5
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 7.2e-200 701.0 524 68.3
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 8.0e-199 697.6 517 67.9
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 8.0e-199 697.6 453 73.7
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 2.0e-197 693.0 520 67.5
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 5.4e-187 658.3 555 63.8
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.6e-183 646.7 374 82.6
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 2.4e-179 632.9 538 61.2
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 3.2e-179 632.5 420 74.3
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.9e-163 580.1 382 75.4
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 8.3e-156 554.7 452 59.7
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 3.5e-154 549.3 440 58.9
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 2.5e-152 543.1 421 67.5
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 4.4e-149 532.3 428 65.0
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 2.2e-148 530.0 437 59.0
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 1.0e-137 494.6 519 49.7
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 6.7e-113 412.1 511 44.2
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 2.4e-110 403.7 517 46.4
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 2.4e-110 403.7 518 46.7
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 4.5e-109 399.4 450 50.7
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 5.0e-108 396.0 447 50.3
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 7.9e-106 388.7 552 41.5
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 6.7e-105 385.6 516 46.1
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 3.7e-103 379.8 483 44.1
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 2.5e-99 367.1 255 71.0
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 7.2e-99 365.5 526 45.2
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 4.4e-96 356.3 514 44.4
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 1.7e-84 317.8 176 85.2
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 5.7e-80 302.8 477 38.8
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 4.1e-78 296.6 169 85.2
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 1.4e-54 218.4 160 72.5
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 9.8e-48 195.7 215 55.3
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 5.4e-38 163.3 138 60.9
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 3.1e-33 147.5 131 56.5
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 2.6e-32 144.4 105 68.6
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.1e-30 139.0 79 82.3
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 8.4e-23 112.8 141 42.6
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 8.1e-18 96.3 104 51.0
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 8.4e-15 86.3 58 67.2
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 3.3e-11 74.3 142 43.0
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 9.6e-11 72.8 145 37.9
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 9.0e-09 66.2 133 37.6
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 1.5e-08 65.5 145 35.2
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 2.6e-08 64.7 103 44.7
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 6.5e-07 60.1 38 73.7


User provided reference genes

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