Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 0.0e+00 1180.6 601 100.0
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 6.0e-253 877.5 548 83.0
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.5e-251 872.8 548 82.3
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 1.1e-238 830.1 537 78.0
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 3.2e-238 828.6 540 78.3
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 4.1e-238 828.2 539 77.9
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 6.0e-237 824.3 539 78.1
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 2.3e-236 822.4 541 78.0
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 9.6e-235 817.0 539 76.6
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 2.4e-233 812.4 539 77.0
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 3.5e-221 771.9 532 75.4
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 1.5e-216 756.5 538 69.7
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 1.3e-215 753.4 539 72.2
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 2.3e-212 742.7 538 69.3
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 6.2e-210 734.6 538 68.0
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 1.8e-209 733.0 541 71.5
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 4.0e-209 731.9 538 68.4
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.1e-201 707.2 540 65.6
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.1e-201 705.7 540 66.7
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.1e-201 705.7 540 66.7
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 6.9e-201 704.5 538 67.3
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 6.9e-201 704.5 567 65.1
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 1.4e-198 696.8 540 65.2
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 1.9e-198 696.4 538 66.9
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 2.1e-197 693.0 540 65.0
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 4.6e-197 691.8 540 65.4
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 4.6e-197 691.8 540 64.4
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 1.9e-195 686.4 537 66.3
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 7.4e-195 684.5 537 65.0
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.6e-194 683.3 519 65.9
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 1.1e-193 680.6 539 63.5
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 2.4e-193 679.5 520 66.5
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 3.1e-193 679.1 541 64.7
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 9.1e-193 677.6 537 64.6
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 1.2e-192 677.2 547 63.3
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 1.5e-192 676.8 519 66.3
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 3.4e-192 675.6 540 62.6
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 5.9e-192 674.9 539 62.7
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 5.9e-192 674.9 540 64.3
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 1.0e-191 674.1 541 63.2
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.7e-191 673.3 537 64.6
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.7e-191 673.3 547 62.9
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 2.2e-191 672.9 539 64.4
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 1.4e-190 670.2 537 65.0
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 1.9e-190 669.8 538 63.8
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 3.6e-189 665.6 538 63.4
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 1.8e-188 663.3 552 62.9
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 5.1e-188 661.8 532 62.6
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 2.2e-186 656.4 505 65.9
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 2.8e-186 656.0 543 62.6
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 4.8e-186 655.2 538 63.0
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 1.1e-185 654.1 536 62.5
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 5.9e-184 648.3 540 61.3
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 5.0e-183 645.2 541 61.2
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 1.4e-182 643.7 540 61.1
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 2.5e-182 642.9 540 61.7
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 3.2e-182 642.5 538 61.7
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 4.2e-182 642.1 537 60.5
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 4.2e-182 642.1 555 60.4
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.6e-181 640.2 519 63.4
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 3.6e-181 639.0 526 61.6
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.7e-181 638.6 519 63.0
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 4.7e-181 638.6 540 60.4
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 6.1e-181 638.3 537 61.5
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.0e-180 637.5 519 63.0
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 3.0e-180 636.0 540 60.4
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 6.7e-180 634.8 537 61.1
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 8.8e-180 634.4 536 60.1
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.1e-179 634.0 519 62.4
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 1.1e-179 634.0 537 61.1
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.0e-179 633.3 519 62.6
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 7.0e-177 624.8 539 59.2
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 4.5e-176 622.1 541 58.4
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 6.5e-175 618.2 525 61.1
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.1e-174 617.5 520 61.5
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 7.2e-174 614.8 547 58.7
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 1.6e-173 613.6 321 97.8
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.6e-173 613.6 531 60.5
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 2.3e-172 609.8 540 58.0
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 3.0e-172 609.4 542 57.6
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 5.2e-172 608.6 543 57.6
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 8.8e-172 607.8 542 57.2
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 1.2e-171 607.4 528 60.0
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 2.0e-171 606.7 538 59.5
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 4.4e-171 605.5 550 58.7
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 9.7e-171 604.4 511 61.4
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 1.4e-169 600.5 543 56.4
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 1.6e-168 597.0 543 56.2
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 2.0e-168 596.7 543 56.2
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 2.5e-166 589.7 542 55.4
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 3.2e-166 589.3 544 56.4
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 1.0e-164 584.3 543 56.2
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 1.2e-163 580.9 542 56.8
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 2.0e-163 580.1 544 56.2
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 4.4e-163 578.9 533 57.4
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 4.5e-160 568.9 512 59.6
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 3.8e-159 565.8 539 53.2
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 9.5e-158 561.2 536 54.1
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.0e-156 556.2 424 71.0
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 2.4e-153 546.6 413 65.1
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 3.5e-152 542.7 549 53.6
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.0e-151 541.2 549 52.8
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 1.9e-137 493.8 423 59.6
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 4.1e-137 492.7 423 65.0
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 1.3e-135 487.6 419 59.2
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 3.1e-132 476.5 408 60.3
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 5.1e-127 459.1 553 47.9
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 2.8e-125 453.4 551 47.4
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 2.1e-117 427.2 493 50.3
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.4e-116 424.5 570 39.3
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 4.9e-114 416.0 357 60.2
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 1.3e-111 407.9 472 47.5
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 2.4e-105 387.1 540 43.5
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 1.8e-103 380.9 353 56.1
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 5.8e-99 365.9 505 41.6
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 1.0e-95 355.1 488 41.0
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 1.1e-92 345.1 591 37.7
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 4.6e-88 329.7 263 61.6
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 6.0e-88 329.3 316 56.6
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 4.3e-86 323.2 486 37.9
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 1.2e-83 315.1 501 40.1
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 1.5e-83 314.7 275 63.6
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 2.0e-83 314.3 501 39.9
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 2.6e-83 313.9 346 52.3
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.0e-79 300.4 204 77.0
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 2.2e-77 294.3 229 70.7
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 3.6e-56 223.8 255 47.5
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 5.9e-43 179.9 118 78.0
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 8.3e-37 159.5 166 57.2
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 5.4e-36 156.8 111 73.9
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 1.7e-34 151.8 197 49.2
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 9.5e-33 146.0 589 25.0
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.0e-31 142.5 104 65.4
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 3.1e-31 141.0 520 28.8
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 5.2e-31 140.2 451 29.0
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 6.4e-29 133.3 121 56.2
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 1.1e-28 132.5 88 76.1
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.0e-28 129.8 103 61.2
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 6.0e-27 126.7 88 63.6
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 1.0e-26 125.9 90 73.3
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 1.3e-26 125.6 96 62.5
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 1.2e-24 119.0 114 54.4
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 4.9e-21 107.1 501 24.2
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 3.9e-18 97.4 114 47.4
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.7e-13 82.0 85 45.9
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 3.9e-10 70.9 125 40.0
FAN22G1210 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.5e-09 66.2 62 51.6
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 4.7e-08 63.9 84 47.6
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 1.2e-06 59.3 492 21.5
Cfa026360 Carpinus fangiana HOM05D001925 ORTHO05D005701 7.6e-06 56.6 532 22.7


User provided reference genes

Program Settings