Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 0.0e+00 1215.3 750 100.0
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 0.0e+00 1179.5 750 96.7
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 8.7e-161 571.6 786 58.5
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 3.0e-145 520.0 752 50.3
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 9.1e-142 508.4 760 50.4
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 3.6e-138 496.5 802 51.5
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 3.0e-137 493.4 806 51.6
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 8.8e-137 491.9 801 50.8
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.1e-134 485.0 792 49.0
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 2.2e-132 477.2 783 51.5
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 9.1e-126 455.3 704 54.4
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 9.1e-126 455.3 685 56.4
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 7.7e-125 452.2 816 48.4
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 8.5e-124 448.7 816 48.4
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 1.9e-123 447.6 771 47.1
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 1.2e-122 444.9 836 48.7
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 2.7e-117 427.2 700 50.4
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 6.5e-116 422.5 791 48.7
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 6.5e-116 422.5 754 50.1
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 3.8e-108 396.7 777 47.4
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.8e-105 387.9 705 49.6
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 1.2e-104 385.2 765 44.1
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 2.0e-104 384.4 772 47.9
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.2e-102 377.1 763 45.0
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.2e-102 377.1 763 45.0
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 3.2e-102 377.1 701 48.5
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 2.7e-101 374.0 763 45.1
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 2.7e-101 374.0 801 42.1
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 5.0e-100 369.8 793 42.7
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 6.6e-100 369.4 818 45.2
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.5e-99 368.2 796 41.5
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.1e-98 364.4 762 44.9
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 2.8e-98 364.0 782 44.5
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 1.4e-97 361.7 701 48.2
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 2.3e-97 360.9 804 41.5
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 6.8e-97 359.4 720 45.6
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 3.4e-96 357.1 796 43.1
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 1.7e-95 354.8 805 43.6
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 1.7e-95 354.8 807 41.8
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 2.2e-95 354.4 827 43.8
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 2.2e-95 354.4 778 44.3
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 2.9e-95 354.0 696 45.3
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.9e-94 351.3 815 41.7
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 7.0e-94 349.4 810 42.7
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 3.5e-93 347.1 710 47.3
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 5.0e-92 343.2 798 43.6
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 1.9e-91 341.3 801 41.6
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 4.3e-91 340.1 763 42.5
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 3.1e-89 334.0 703 43.2
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 1.2e-88 332.0 800 43.5
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 2.0e-88 331.3 774 43.0
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.4e-88 330.5 777 41.7
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 7.5e-88 329.3 780 41.2
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 6.4e-87 326.2 709 44.3
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.7e-84 318.2 710 45.1
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 3.9e-84 317.0 702 41.0
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 5.6e-83 313.2 713 43.2
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 2.8e-82 310.8 693 45.7
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 3.4e-80 303.9 714 43.6
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 7.6e-80 302.8 794 42.9
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 2.2e-79 301.2 717 43.8
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 2.3e-76 291.2 757 40.3
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 5.6e-75 286.6 824 41.6
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.2e-74 285.4 805 42.6
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 4.0e-73 280.4 672 46.1
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 5.3e-73 280.0 768 38.7
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 7.6e-72 276.2 753 42.8
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.7e-71 275.0 760 38.4
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 3.5e-69 267.3 762 41.2
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 1.5e-67 261.9 734 40.9
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 2.5e-67 261.2 660 38.3
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 4.3e-67 260.4 608 40.0
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.3e-66 258.8 778 38.6
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 1.6e-66 258.5 750 40.5
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 4.8e-66 256.9 481 54.3
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 6.9e-65 253.1 718 38.0
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 9.0e-65 252.7 805 40.0
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.2e-64 252.3 676 37.7
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 3.8e-63 247.3 773 36.5
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 8.4e-63 246.1 741 37.2
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 1.9e-62 245.0 744 39.8
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 7.1e-62 243.0 748 34.6
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 9.3e-62 242.7 711 38.1
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.2e-61 242.3 834 41.6
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 5.1e-60 236.9 599 38.1
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.5e-59 235.3 697 38.2
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 1.1e-57 229.2 789 39.2
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 3.4e-56 224.2 789 38.1
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 5.8e-56 223.4 761 39.2
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.6e-53 215.3 421 42.0
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 2.1e-53 214.9 350 46.6
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 2.7e-53 214.5 669 41.4
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 6.7e-52 209.9 745 39.3
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 6.7e-52 209.9 704 38.1
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 1.5e-51 208.8 355 44.8
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 7.4e-51 206.5 764 38.0
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 2.8e-50 204.5 645 36.1
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 8.2e-50 203.0 761 36.5
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 4.0e-49 200.7 759 38.7
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.6e-48 198.0 758 36.4
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.9e-47 194.5 255 51.0
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 4.9e-47 193.7 761 38.0
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 6.5e-47 193.4 678 32.4
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.1e-46 192.6 722 36.0
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 3.2e-46 191.0 724 32.7
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 9.3e-46 189.5 702 40.0
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 9.3e-46 189.5 663 32.6
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 1.2e-45 189.1 743 37.4
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 4.6e-45 187.2 697 38.0
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 1.3e-44 185.7 711 36.1
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.8e-44 185.3 680 36.8
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 5.1e-44 183.7 698 32.8
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 3.7e-42 177.6 699 32.5
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 1.1e-41 176.0 633 34.4
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.1e-41 176.0 770 30.5
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.1e-41 176.0 626 34.5
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.8e-41 175.3 589 34.0
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.1e-41 174.5 744 32.8
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.2e-40 172.6 654 32.3
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 4.5e-40 170.6 640 37.0
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 5.9e-40 170.2 672 36.8
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.7e-39 168.7 660 36.1
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 3.8e-39 167.5 708 33.1
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 8.5e-39 166.4 775 34.8
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 1.4e-38 165.6 404 40.3
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 2.5e-38 164.9 245 46.5
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 2.1e-37 161.8 671 33.5
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.6e-37 160.6 708 31.9
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 7.9e-37 159.8 581 37.2
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 3.9e-36 157.5 661 32.5
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 3.9e-36 157.5 708 32.5
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 4.3e-35 154.1 785 31.1
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 7.4e-35 153.3 518 37.3
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 8.2e-34 149.8 598 34.1
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.0e-31 142.9 423 47.3
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 4.2e-30 137.5 473 40.8
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 4.7e-29 134.0 136 61.8
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 6.1e-29 133.7 714 28.9
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 1.0e-28 132.9 716 29.6
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 5.1e-28 130.6 432 37.3
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 2.2e-26 125.2 646 29.3
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.7e-26 124.4 682 26.8
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.8e-25 122.1 224 40.6
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 5.3e-25 120.6 106 64.2
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 5.9e-24 117.1 539 31.0
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.7e-23 115.5 760 31.7
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.8e-23 114.4 692 26.9
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 2.7e-21 108.2 398 44.2
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 3.6e-21 107.8 533 35.6
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 1.8e-20 105.5 551 30.9
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 1.8e-20 105.5 551 30.9
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 5.2e-20 104.0 549 30.6
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.6e-19 101.7 139 49.6
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 4.4e-19 100.9 124 51.6
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 2.8e-18 98.2 606 27.1
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 3.1e-17 94.7 538 30.3
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 4.5e-16 90.9 615 30.2
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.2e-15 88.6 232 37.1
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 9.4e-14 83.2 226 33.6
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 6.1e-13 80.5 151 37.7
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 2.3e-12 78.6 334 31.4
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 1.7e-10 72.4 90 52.2
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.8e-10 71.6 108 46.3
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 6.3e-10 70.5 191 33.5
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.0e-08 65.5 85 49.4
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 3.5e-08 64.7 82 51.2
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 4.5e-08 64.3 82 50.0
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 6.5e-07 60.5 287 36.6
Psat3g059240 Pisum sativum HOM05D003795 ORTHO05D004308 1.1e-06 59.7 41 75.6
Psat7g004680 Pisum sativum HOM05D003795 ORTHO05D004308 1.5e-06 59.3 41 73.2
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 4.2e-06 57.8 197 31.0


User provided reference genes

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