Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6847YK Arachis hypogaea HOM05D004783 ORTHO05D005581 1.1e-172 609.8 297 100.0
arahy.Tifrunner.gnm1.ann1.IFYB19 Arachis hypogaea HOM05D004783 ORTHO05D005581 5.5e-151 537.7 298 88.6
arahy.Tifrunner.gnm1.ann1.6TK8TS Arachis hypogaea HOM05D004783 ORTHO05D005581 2.0e-148 529.3 298 86.9
arahy.Tifrunner.gnm1.ann1.EB1NGP Arachis hypogaea HOM05D004783 ORTHO05D005581 3.3e-143 511.9 298 84.6
arahy.Tifrunner.gnm1.ann1.I0AKGU Arachis hypogaea HOM05D004783 ORTHO05D005581 4.9e-139 498.0 298 81.9
arahy.Tifrunner.gnm1.ann1.Z9P42K Arachis hypogaea HOM05D004783 ORTHO05D005581 2.5e-135 485.7 298 80.9
arahy.Tifrunner.gnm1.ann1.U93Q4L Arachis hypogaea HOM05D004783 ORTHO05D005581 2.1e-134 482.6 292 82.5
arahy.Tifrunner.gnm1.ann1.7R7ZTH Arachis hypogaea HOM05D004783 ORTHO05D005581 4.7e-134 481.5 296 81.8
Lalb_Chr04g0249471 Lupinus albus HOM05D004783 ORTHO05D005581 1.6e-81 307.0 289 52.9
Lj4g0006774 Lotus japonicus HOM05D004783 ORTHO05D005581 3.9e-80 302.4 289 54.7
Psat2g021520 Pisum sativum HOM05D004783 ORTHO05D005581 6.7e-80 301.6 289 52.2
LjContig00564g0007311 Lotus japonicus HOM05D004783 ORTHO05D005581 1.1e-77 294.3 292 54.1
Medtr5g088490 Medicago truncatula HOM05D004783 ORTHO05D005581 1.2e-76 290.8 289 52.2
Glyma.02G276200 Glycine max HOM05D004783 ORTHO05D005581 4.9e-75 285.4 292 51.4
Phvul.008G205300 Phaseolus vulgaris HOM05D004783 ORTHO05D005581 1.6e-73 280.4 292 50.0
Glyma.14G039600 Glycine max HOM05D004783 ORTHO05D005581 1.4e-69 267.3 298 48.7
TPR.G14625 Trifolium pratense HOM05D004783 ORTHO05D005581 2.0e-68 263.5 302 45.4
Medtr5g088510 Medicago truncatula HOM05D004783 ORTHO05D005581 7.7e-68 261.5 289 48.8
Ca_06171_v3 Cicer arietinum L. HOM05D004783 ORTHO05D005581 1.0e-67 261.2 289 47.1
TPR.G11801 Trifolium pratense HOM05D004783 ORTHO05D005581 4.2e-66 255.8 289 47.4
CiPaw.13G145000 Carya illinoinensis HOM05D004783 ORTHO05D005581 9.4e-66 254.6 290 47.6
QL02p039304 Quercus lobata HOM05D004783 ORTHO05D005581 6.1e-65 251.9 282 47.5
Cfa010144 Carpinus fangiana HOM05D004783 ORTHO05D005581 8.2e-62 241.5 293 45.4
CSS0029611 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 5.3e-61 238.8 290 44.8
CSS0039136 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 5.3e-61 238.8 290 44.8
Dinv06816 Davidia involucrata HOM05D004783 ORTHO05D005581 5.3e-61 238.8 293 45.4
Actinidia24491 Actinidia chinensis HOM05D004783 ORTHO05D005581 6.9e-61 238.4 292 43.8
CSS0049259 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 9.1e-61 238.0 290 44.8
Prupe.8G057300 Prunus persica HOM05D004783 ORTHO05D005581 7.7e-60 235.0 287 44.6
RcHm_v2.0_Chr5g0055041 Rosa chinensis HOM05D004783 ORTHO05D005581 2.2e-59 233.4 287 46.0
Haze_23534 Corylus avellana HOM05D004783 ORTHO05D005581 6.5e-59 231.9 293 43.7
VMungo0647G1136 Vigna mungo HOM05D004783 ORTHO05D005581 6.5e-59 231.9 292 43.5
COL.COLO4_29903 Corchorus olitorius HOM05D004783 ORTHO05D005581 8.5e-59 231.5 291 44.0
Rhsim01G0260800 Rhododendron simsii HOM05D004783 ORTHO05D005581 1.4e-58 230.7 292 43.5
Hma1.2p1_0057F.1_g032040 Hydrangea macrophylla HOM05D004783 ORTHO05D005581 2.5e-58 229.9 283 45.9
Thecc.04G015500 Theobroma cacao HOM05D004783 ORTHO05D005581 2.7e-57 226.5 293 43.7
QL03p008874 Quercus lobata HOM05D004783 ORTHO05D005581 1.4e-56 224.2 252 47.2
Lj1P662T20 Lonicera japonica HOM05D004783 ORTHO05D005581 6.7e-56 221.9 290 39.3
Ciclev10024609m.g Citrus clementina HOM05D004783 ORTHO05D005581 2.0e-55 220.3 288 41.7
CsaV3_2G007350 Cucumis sativus L. HOM05D004783 ORTHO05D005581 2.0e-55 220.3 286 44.4
FAN16G2696 Fragaria x ananassa HOM05D004783 ORTHO05D005581 2.0e-55 220.3 287 42.5
Nitab4.5_0003308g0060 Nicotiana tabacum HOM05D004783 ORTHO05D005581 2.0e-55 220.3 289 39.4
TWI79G0945 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 2.0e-55 220.3 290 43.1
FAN25G1477 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.7e-54 217.2 287 41.8
FAN11G1373 Fragaria x ananassa HOM05D004783 ORTHO05D005581 2.2e-54 216.9 287 41.8
FvH4_3g29690 Fragaria vesca HOM05D004783 ORTHO05D005581 2.8e-54 216.5 287 41.8
TWI75G1155 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 2.8e-54 216.5 291 42.6
FAN15G2228 Fragaria x ananassa HOM05D004783 ORTHO05D005581 4.8e-54 215.7 287 41.8
Gorai.012G085500 Gossypium raimondii HOM05D004783 ORTHO05D005581 6.3e-54 215.3 290 41.4
Manes.01G175200 Manihot esculenta HOM05D004783 ORTHO05D005581 6.3e-54 215.3 254 44.1
Sabra01G0174200 Salix brachista HOM05D004783 ORTHO05D005581 8.2e-54 214.9 292 43.2
Potri.004G229100 Populus trichocarpa HOM05D004783 ORTHO05D005581 1.4e-53 214.2 292 42.1
Gohir.D04G075700 Gossypium hirsutum HOM05D004783 ORTHO05D005581 1.8e-53 213.8 290 41.0
AUR62009429 Chenopodium quinoa HOM05D004783 ORTHO05D005581 2.4e-53 213.4 282 41.8
Gohir.A05G337100 Gossypium hirsutum HOM05D004783 ORTHO05D005581 4.1e-53 212.6 290 41.0
Sopen07g021630 Solanum pennellii HOM05D004783 ORTHO05D005581 2.6e-52 209.9 289 39.8
CANSAT56G4335 Cannabis sativa HOM05D004783 ORTHO05D005581 7.7e-52 208.4 268 43.3
Nn2g14491 Nelumbo nucifera HOM05D004783 ORTHO05D005581 7.7e-52 208.4 289 41.5
Solyc07g042030.2 Solanum lycopersicum HOM05D004783 ORTHO05D005581 7.7e-52 208.4 289 39.4
Peaxi162Scf00315g00041 Petunia axillaris HOM05D004783 ORTHO05D005581 1.0e-51 208.0 293 39.6
PGSC0003DMG400027882 Solanum tuberosum HOM05D004783 ORTHO05D005581 1.0e-51 208.0 290 40.3
CAN.G147.12 Capsicum annuum HOM05D004783 ORTHO05D005581 1.3e-51 207.6 290 39.7
Gohir.A02G106600 Gossypium hirsutum HOM05D004783 ORTHO05D005581 1.3e-51 207.6 290 40.7
Sed0014805 Sechium edule HOM05D004783 ORTHO05D005581 2.9e-51 206.5 290 40.0
Cpa.g.c26548.5 Carica papaya HOM05D004783 ORTHO05D005581 3.8e-51 206.1 289 40.5
Ah.10g038540 Amaranthus hybridus HOM05D001978 ORTHO05D003036 1.4e-50 204.1 285 38.9
EL10Ac2g04386 Beta vulgaris HOM05D004783 ORTHO05D005581 4.2e-50 202.6 283 40.6
CARHR064510 Cardamine hirsuta HOM05D004783 ORTHO05D005581 4.2e-50 202.6 245 42.9
MSTRG.26477 Avicennia marina HOM05D004783 ORTHO05D005581 7.2e-50 201.8 292 38.7
AUR62023108 Chenopodium quinoa HOM05D004783 ORTHO05D005581 7.2e-50 201.8 285 40.0
Carub.0002s1809 Capsella rubella HOM05D004783 ORTHO05D005581 1.2e-49 201.1 247 43.3
TAR622G0302 Trochodendron aralioides HOM05D004783 ORTHO05D005581 3.6e-49 199.5 294 39.8
TAR622G0815 Trochodendron aralioides HOM05D004783 ORTHO05D005581 3.6e-49 199.5 294 39.8
Gorai.003G087500 Gossypium raimondii HOM05D004783 ORTHO05D005581 4.7e-49 199.1 262 42.0
Aa31LG4G9300 Aethionema arabicum HOM05D004783 ORTHO05D005581 1.0e-48 198.0 293 38.2
Gohir.D03G072203 Gossypium hirsutum HOM05D004783 ORTHO05D005581 1.8e-48 197.2 262 41.6
SGA_v2.0_scaffold296G47545 Striga asiatica HOM05D004783 ORTHO05D005581 2.3e-48 196.8 292 39.7
ECA232G0714 Erigeron canadensis HOM05D004783 ORTHO05D005581 3.0e-48 196.4 268 38.8
Lsat_1_v5_gn_4_139241 Lactuca sativa HOM05D004783 ORTHO05D005581 3.9e-48 196.1 299 37.5
Sc10g0000400 Simmondsia chinensis HOM05D004783 ORTHO05D005581 5.2e-48 195.7 280 40.4
PGR119G2361 Punica granatum HOM05D004783 ORTHO05D005581 8.8e-48 194.9 289 35.6
THA.LOC104800219 Tarenaya hassleriana HOM05D004783 ORTHO05D005581 8.8e-48 194.9 292 34.9
Migut.L01576 Erythranthe guttata HOM05D004783 ORTHO05D005581 7.4e-47 191.8 292 37.7
Manes.02G133800 Manihot esculenta HOM05D004783 ORTHO05D005581 9.7e-47 191.4 257 41.6
Ah.16g100720 Amaranthus hybridus HOM05D004783 ORTHO05D005581 2.8e-46 189.9 295 36.9
Oeu062248.1 Olea europaea HOM05D004783 ORTHO05D005581 3.7e-46 189.5 283 38.5
ECA234G4279 Erigeron canadensis HOM05D004783 ORTHO05D005581 1.1e-45 188.0 268 37.7
MD10G1047800 Malus domestica HOM05D004783 ORTHO05D005581 9.1e-45 184.9 290 38.3
Cc06_g12410 Coffea canephora HOM05D004783 ORTHO05D005581 1.2e-44 184.5 285 36.5
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 1.2e-44 184.5 291 35.4
Atru.BG.182.p Acer truncatum HOM05D004783 ORTHO05D005581 2.0e-44 183.7 256 40.2
Lsat_1_v5_gn_4_139140 Lactuca sativa HOM05D004783 ORTHO05D005581 2.0e-44 183.7 299 35.1
SGA_v2.0_scaffold21G09513 Striga asiatica HOM05D004783 ORTHO05D005581 3.5e-44 183.0 292 37.7
Atru.chr9.109 Acer truncatum HOM05D004783 ORTHO05D005581 3.8e-43 179.5 290 35.9
HanXRQChr15g0495131 Helianthus annuus HOM05D004783 ORTHO05D005581 4.2e-42 176.0 301 34.2
MD05G1041400 Malus domestica HOM05D004783 ORTHO05D005581 9.4e-42 174.9 290 35.9
DCAR_019962 Daucus carota HOM05D004783 ORTHO05D005581 1.6e-41 174.1 301 35.2
AL2G30824 Arabidopsis lyrata HOM05D004783 ORTHO05D005581 1.0e-40 171.4 245 38.4
Eucgr.J00651 Eucalyptus grandis HOM05D004783 ORTHO05D005581 1.4e-40 171.0 290 35.9
SHI25070 Sapria himalayana HOM05D004783 ORTHO05D005581 4.0e-40 169.5 284 34.9
PSO063G6404 Papaver somniferum HOM05D004783 ORTHO05D005581 6.8e-40 168.7 273 36.3
PSO198G0081 Papaver somniferum HOM05D004783 ORTHO05D005581 4.4e-39 166.0 295 34.6
Sp5g26370 Schrenkiella parvula HOM05D004783 ORTHO05D005581 4.4e-39 166.0 245 36.7
Os02g0127600 Oryza sativa ssp. japonica HOM05D004783 ORTHO05D005581 5.7e-39 165.6 249 38.2
AT1G71210 Arabidopsis thaliana HOM05D004783 ORTHO05D005581 7.5e-39 165.2 245 36.7
BcaB03g14878 Brassica carinata HOM05D004783 ORTHO05D005581 2.2e-38 163.7 245 36.3
Migut.J00915 Erythranthe guttata HOM05D004783 ORTHO05D005581 3.7e-38 162.9 291 33.7
MBI04_g31965_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 3.7e-38 162.9 258 38.4
Thhalv10018115m.g Eutrema salsugineum HOM05D004783 ORTHO05D005581 4.1e-37 159.5 245 36.3
A07p37560 Brassica napus HOM05D004783 ORTHO05D005581 1.6e-36 157.5 245 36.3
BraA07t31317Z Brassica rapa HOM05D004783 ORTHO05D005581 1.6e-36 157.5 245 36.3
C06p45300 Brassica napus HOM05D004783 ORTHO05D005581 2.0e-36 157.1 245 35.9
MBI04_g31977_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 2.9e-35 153.3 239 37.7
Zm00001eb231010 Zea mays HOM05D004783 ORTHO05D005581 2.9e-35 153.3 252 35.7
CDE02G3572 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 2.5e-26 123.6 300 29.0
COL.COLO4_04586 Corchorus olitorius HOM05D004783 ORTHO05D005581 6.1e-25 119.0 256 31.2
ATR0605G071 Amborella trichopoda HOM05D004783 ORTHO05D005581 9.8e-23 111.7 272 31.6
HPP92_028305 Vanilla planifolia HOM05D004783 ORTHO05D005581 3.5e-20 103.2 179 36.3
CDE09G0275 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 1.1e-18 98.2 299 27.4
CAN.G986.33 Capsicum annuum HOM05D004783 ORTHO05D005581 8.0e-17 92.0 178 33.1
FAN05G2593 Fragaria x ananassa HOM05D004783 ORTHO05D005581 8.3e-14 82.0 157 31.8
FAN10G2924 Fragaria x ananassa HOM05D004783 ORTHO05D005581 8.3e-14 82.0 157 31.8
FAN16G1650 Fragaria x ananassa HOM05D004783 ORTHO05D005581 8.3e-14 82.0 157 31.8
FAN27G1421 Fragaria x ananassa HOM05D004783 ORTHO05D005581 8.3e-14 82.0 157 31.8
FAN11G3663 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.1e-13 81.6 135 32.6
Potri.003G000701 Populus trichocarpa HOM05D004783 ORTHO05D005581 2.4e-13 80.5 111 44.1
PSO384G5041 Papaver somniferum HOM05D000424 ORTHO05D000355 1.0e-11 75.1 303 27.4
DCAR_003089 Daucus carota HOM05D004783 ORTHO05D005581 2.3e-11 73.9 136 30.9
BraA06t24742Z Brassica rapa HOM05D000424 ORTHO05D000355 3.6e-09 66.6 151 25.8
A06p16380 Brassica napus HOM05D000424 ORTHO05D000355 4.7e-09 66.2 151 25.8
BolC5t30587H Brassica oleracea HOM05D000424 ORTHO05D000355 1.1e-08 65.1 151 25.8
BolC1t02243H Brassica oleracea HOM05D003975 ORTHO05D009762 2.3e-08 63.9 132 28.8
BcaC05g25930 Brassica carinata HOM05D000424 ORTHO05D000355 8.9e-08 62.0 151 25.2
C05p18820 Brassica napus HOM05D000424 ORTHO05D000355 8.9e-08 62.0 151 25.2
CANSAT01G3161 Cannabis sativa HOM05D000424 ORTHO05D000355 1.5e-07 61.2 133 26.3
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 2.0e-07 60.8 181 24.3
BcaB07g32035 Brassica carinata HOM05D000424 ORTHO05D000355 2.6e-07 60.5 132 25.0
Sed0027329 Sechium edule HOM05D002785 ORTHO05D003042 1.3e-06 58.2 276 24.3
VMungo1309G1540 Vigna mungo HOM05D000424 ORTHO05D000355 1.3e-06 58.2 133 24.8
Phvul.009G019800 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 2.2e-06 57.4 133 24.8
TPR.G38108 Trifolium pratense HOM05D000424 ORTHO05D000355 2.2e-06 57.4 114 27.2
Lsat_1_v5_gn_6_11021 Lactuca sativa HOM05D008234 ORTHO05D010422 2.9e-06 57.0 142 26.1
CiPaw.10G110800 Carya illinoinensis HOM05D002785 ORTHO05D003042 4.9e-06 56.2 284 23.6
Sed0002443 Sechium edule HOM05D002785 ORTHO05D003042 4.9e-06 56.2 276 23.9
Ah.06g194670 Amaranthus hybridus HOM05D006596 ORTHO05D008497 6.4e-06 55.8 172 27.3


User provided reference genes

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