Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 6.0e-83 310.8 161 100.0
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 6.1e-19 98.2 55 90.9
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 2.3e-18 96.3 55 87.3
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 6.9e-15 84.7 55 76.4
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 6.9e-15 84.7 55 76.4
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 6.9e-15 84.7 55 76.4
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 1.2e-14 84.0 57 71.9
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 1.5e-14 83.6 53 71.7
arahy.Tifrunner.gnm1.ann1.TQF6LQ Arachis hypogaea HOM05D009636 ORTHO05D011783 2.0e-14 83.2 90 55.6
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 2.6e-14 82.8 55 72.7
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 3.8e-13 79.0 53 69.8
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 5.0e-13 78.6 55 69.1
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 5.0e-13 78.6 55 70.9
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 6.5e-13 78.2 55 65.5
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 1.1e-12 77.4 68 57.4
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 1.4e-12 77.0 55 69.1
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 1.4e-12 77.0 55 69.1
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 1.4e-12 77.0 53 69.8
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.4e-12 77.0 55 63.6
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 1.9e-12 76.6 58 62.1
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 2.5e-12 76.3 55 67.3
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 2.5e-12 76.3 55 65.5
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 4.2e-12 75.5 55 67.3
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 5.5e-12 75.1 53 67.9
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 5.5e-12 75.1 55 69.1
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.5e-12 75.1 55 67.3
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.5e-12 75.1 55 67.3
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.5e-12 75.1 55 67.3
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.5e-12 75.1 55 67.3
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 7.2e-12 74.7 55 65.5
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 9.4e-12 74.3 58 62.1
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 1.2e-11 73.9 55 69.1
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.2e-11 73.9 55 63.6
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 1.6e-11 73.6 55 58.2
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.6e-11 73.6 55 63.6
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 2.1e-11 73.2 55 65.5
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 2.1e-11 73.2 68 60.3
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 2.1e-11 73.2 58 60.3
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 2.1e-11 73.2 55 65.5
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 2.7e-11 72.8 53 62.3
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 2.7e-11 72.8 57 57.9
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 3.6e-11 72.4 55 63.6
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 3.6e-11 72.4 55 67.3
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 3.6e-11 72.4 57 59.6
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 3.6e-11 72.4 55 65.5
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 4.7e-11 72.0 52 63.5
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 4.7e-11 72.0 55 61.8
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 6.1e-11 71.6 53 64.2
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 8.0e-11 71.2 55 61.8
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 8.0e-11 71.2 55 65.5
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 8.0e-11 71.2 55 65.5
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 8.0e-11 71.2 55 58.2
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.0e-10 70.9 55 65.5
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 1.4e-10 70.5 70 52.9
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.4e-10 70.5 55 63.6
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 1.8e-10 70.1 57 57.9
arahy.Tifrunner.gnm1.ann1.G91YXW Arachis hypogaea HOM05D009636 ORTHO05D011783 2.3e-10 69.7 40 80.0
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 2.3e-10 69.7 52 65.4
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 2.3e-10 69.7 55 63.6
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 2.3e-10 69.7 57 56.1
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 3.0e-10 69.3 49 67.3
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 3.0e-10 69.3 49 67.3
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 3.0e-10 69.3 55 63.6
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 3.9e-10 68.9 75 54.7
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 5.2e-10 68.6 57 64.9
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 6.7e-10 68.2 55 60.0
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 6.7e-10 68.2 57 56.1
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 6.7e-10 68.2 53 64.2
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 8.8e-10 67.8 55 60.0
arahy.Tifrunner.gnm1.ann1.921FSI Arachis hypogaea HOM05D005070 ORTHO05D084069 1.1e-09 67.4 41 80.5
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 1.1e-09 67.4 57 54.4
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 1.5e-09 67.0 57 54.4
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 2.6e-09 66.2 55 61.8
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 2.6e-09 66.2 55 63.6
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 3.3e-09 65.9 55 56.4
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 3.3e-09 65.9 52 61.5
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 3.3e-09 65.9 52 57.7
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 3.3e-09 65.9 48 66.7
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 4.4e-09 65.5 55 58.2
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 4.4e-09 65.5 53 58.5
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 4.4e-09 65.5 52 63.5
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 5.7e-09 65.1 55 60.0
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 5.7e-09 65.1 52 59.6
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 9.7e-09 64.3 55 56.4
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 9.7e-09 64.3 55 56.4
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 9.7e-09 64.3 57 56.1
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 1.3e-08 63.9 57 63.2
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 1.3e-08 63.9 52 57.7
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 1.3e-08 63.9 55 58.2
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 1.7e-08 63.5 55 56.4
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 1.7e-08 63.5 57 50.9
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.7e-08 63.5 57 50.9
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.7e-08 63.5 57 50.9
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.7e-08 63.5 55 56.4
arahy.Tifrunner.gnm1.ann1.ZQ8TLC Arachis hypogaea HOM05D009636 ORTHO05D011783 2.2e-08 63.2 34 88.2
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 2.2e-08 63.2 57 50.9
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 2.2e-08 63.2 53 58.5
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 2.8e-08 62.8 53 54.7
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 3.7e-08 62.4 55 54.5
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 3.7e-08 62.4 46 65.2
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 3.7e-08 62.4 47 61.7
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 3.7e-08 62.4 55 54.5
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 4.8e-08 62.0 45 62.2
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 6.3e-08 61.6 53 56.6
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 6.3e-08 61.6 55 52.7
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 6.3e-08 61.6 53 54.7
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 6.3e-08 61.6 50 58.0
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 6.3e-08 61.6 57 49.1
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 6.3e-08 61.6 55 54.5
arahy.Tifrunner.gnm1.ann1.JJQZ3I Arachis hypogaea HOM05D009636 ORTHO05D011783 8.2e-08 61.2 32 90.6
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 1.1e-07 60.8 47 59.6
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 1.1e-07 60.8 45 64.4
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 1.1e-07 60.8 55 52.7
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 1.4e-07 60.5 55 58.2
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 1.4e-07 60.5 53 56.6
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 2.4e-07 59.7 55 49.1
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 2.4e-07 59.7 46 60.9
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 2.4e-07 59.7 49 55.1
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 2.4e-07 59.7 52 61.5
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 3.1e-07 59.3 54 53.7
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 5.3e-07 58.5 53 56.6
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 5.3e-07 58.5 46 63.0
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 7.0e-07 58.2 45 62.2
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 9.1e-07 57.8 59 49.2
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 9.1e-07 57.8 46 63.0
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 9.1e-07 57.8 46 63.0
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 1.2e-06 57.4 50 54.0
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 1.2e-06 57.4 55 47.3
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 1.6e-06 57.0 32 93.8
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 2.0e-06 56.6 47 57.4
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 2.0e-06 56.6 47 61.7
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 4.5e-06 55.5 32 87.5
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 5.9e-06 55.1 55 49.1
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 5.9e-06 55.1 47 55.3
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 5.9e-06 55.1 55 49.1
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 5.9e-06 55.1 55 49.1
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 5.9e-06 55.1 47 55.3


User provided reference genes

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