Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 1.3e-105 386.3 192 100.0
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 2.4e-62 242.7 116 100.0
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 1.5e-61 240.0 116 99.1
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 7.6e-61 237.7 116 99.1
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 7.9e-50 201.1 114 79.8
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 1.4e-49 200.3 114 80.7
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 6.7e-49 198.0 114 78.9
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 5.7e-48 194.9 114 76.3
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 7.4e-48 194.5 114 76.3
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 9.7e-48 194.1 114 78.1
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 1.3e-47 193.7 114 76.3
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 2.8e-47 192.6 115 72.2
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 1.4e-46 190.3 112 76.8
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 1.8e-46 189.9 114 76.3
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 2.4e-46 189.5 113 75.2
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 7.0e-46 188.0 115 72.2
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 6.5e-44 181.4 113 70.8
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 8.5e-44 181.0 115 69.6
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 8.5e-44 181.0 116 68.1
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 1.1e-43 180.6 112 74.1
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 2.5e-43 179.5 112 73.2
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 4.2e-43 178.7 112 73.2
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 1.2e-42 177.2 112 71.4
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 3.6e-42 175.6 112 71.4
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 4.7e-42 175.3 112 72.3
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 1.0e-41 174.1 112 67.0
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 1.4e-41 173.7 116 67.2
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 1.8e-41 173.3 112 71.4
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 2.3e-41 172.9 112 72.3
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 3.0e-41 172.6 113 69.0
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 3.9e-41 172.2 116 66.4
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 8.8e-41 171.0 112 66.1
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 3.3e-40 169.1 116 65.5
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 5.7e-40 168.3 112 67.9
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.7e-40 168.3 112 68.8
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 1.3e-39 167.2 112 67.0
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.3e-39 167.2 113 65.5
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 1.7e-39 166.8 112 68.8
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.7e-39 166.8 112 67.9
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 2.2e-39 166.4 112 69.6
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 2.8e-39 166.0 112 67.9
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.8e-39 166.0 112 67.0
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.7e-39 165.6 113 66.4
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 3.7e-39 165.6 112 67.0
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 3.7e-39 165.6 112 66.1
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 4.8e-39 165.2 112 67.9
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 4.8e-39 165.2 112 67.0
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 4.8e-39 165.2 112 67.0
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 6.3e-39 164.9 110 69.1
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 6.3e-39 164.9 110 69.1
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 8.2e-39 164.5 112 65.2
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 1.1e-38 164.1 112 67.0
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.1e-38 164.1 113 65.5
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 1.1e-38 164.1 113 65.5
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 1.4e-38 163.7 114 65.8
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 1.4e-38 163.7 112 64.3
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 1.8e-38 163.3 114 65.8
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.8e-38 163.3 110 68.2
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.8e-38 163.3 112 66.1
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 2.4e-38 162.9 115 65.2
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 2.4e-38 162.9 115 65.2
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 2.4e-38 162.9 115 65.2
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 4.1e-38 162.2 109 68.8
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 5.3e-38 161.8 112 65.2
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 5.3e-38 161.8 112 64.3
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 5.3e-38 161.8 112 66.1
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 5.3e-38 161.8 112 65.2
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 9.1e-38 161.0 114 64.9
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 2.6e-37 159.5 129 58.9
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 3.5e-37 159.1 114 64.0
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 3.5e-37 159.1 114 64.0
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 3.5e-37 159.1 112 63.4
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 4.5e-37 158.7 111 64.9
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 4.5e-37 158.7 111 64.9
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 4.5e-37 158.7 111 64.9
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 4.5e-37 158.7 112 64.3
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 4.5e-37 158.7 112 64.3
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 5.9e-37 158.3 112 64.3
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 7.7e-37 157.9 116 62.1
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 1.0e-36 157.5 116 61.2
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.3e-36 157.1 102 72.5
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.3e-36 157.1 113 64.6
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 1.7e-36 156.8 112 65.2
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.7e-36 156.8 112 64.3
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 2.2e-36 156.4 116 61.2
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.9e-36 156.0 108 67.6
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 8.5e-36 154.5 114 59.6
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 8.5e-36 154.5 108 68.5
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.5e-35 153.7 116 62.9
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 1.9e-35 153.3 116 62.1
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 2.5e-35 152.9 112 62.5
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 7.2e-35 151.4 112 63.4
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 2.1e-34 149.8 112 63.4
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 2.1e-34 149.8 112 63.4
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 4.7e-34 148.7 113 61.1
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 4.7e-34 148.7 113 63.7
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 4.7e-34 148.7 114 61.4
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 4.7e-34 148.7 112 62.5
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 8.0e-34 147.9 114 61.4
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 1.0e-33 147.5 112 57.1
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 3.0e-33 146.0 112 61.6
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 3.0e-33 146.0 120 56.7
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 1.5e-32 143.7 112 56.2
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 2.0e-32 143.3 112 60.7
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 6.3e-31 138.3 182 42.9
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 8.2e-31 137.9 115 63.5
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 1.4e-30 137.1 106 59.4
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 5.3e-30 135.2 113 56.6
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 1.2e-29 134.0 109 57.8
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 2.0e-29 133.3 114 56.1
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 3.5e-29 132.5 109 57.8
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.0e-28 131.0 117 52.1
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 1.0e-25 120.9 194 34.5
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.2e-24 117.5 112 47.3
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 2.6e-24 116.3 112 46.4
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 2.2e-23 113.2 83 61.4
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 6.3e-23 111.7 114 50.0
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 7.0e-22 108.2 114 48.2
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 1.2e-21 107.5 78 65.4
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 3.5e-21 105.9 85 58.8
arahy.Tifrunner.gnm1.ann1.YXB0UP Arachis hypogaea HOM05D005008 ORTHO05D083478 5.9e-21 105.1 88 69.3
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 8.6e-20 101.3 111 43.2
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 2.5e-19 99.8 64 71.9
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 7.2e-19 98.2 116 40.5
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 1.6e-18 97.1 116 39.7
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 1.8e-17 93.6 63 71.4
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 5.2e-17 92.0 115 43.5
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 6.8e-17 91.7 111 38.7
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 8.9e-17 91.3 99 45.5
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 1.2e-16 90.9 99 45.5
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 1.5e-16 90.5 99 44.4
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 4.4e-16 89.0 66 66.7
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.3e-15 87.4 115 42.6
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.7e-15 87.0 115 40.9
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 2.2e-15 86.7 101 42.6
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 1.4e-14 84.0 81 48.1
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 4.1e-14 82.4 50 66.0
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 7.8e-13 78.2 165 34.5
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 3.6e-10 69.3 98 39.8
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 6.1e-10 68.6 66 53.0
arahy.Tifrunner.gnm1.ann1.6DQ84X Arachis hypogaea HOM05D000211 ORTHO05D015768 1.4e-06 57.4 25 92.0
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 7.0e-06 55.1 45 51.1
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 7.0e-06 55.1 45 51.1


User provided reference genes

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