Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 1.2e-107 393.3 213 100.0
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 2.2e-101 372.5 213 96.2
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 1.8e-58 229.9 263 58.2
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 9.1e-55 217.6 292 51.7
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 2.0e-54 216.5 270 58.1
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 5.9e-54 214.9 284 51.1
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 6.5e-53 211.5 264 56.4
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 1.1e-52 210.7 273 55.7
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 5.5e-52 208.4 286 51.7
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 3.6e-51 205.7 289 48.1
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 1.4e-50 203.8 266 54.1
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 8.2e-48 194.5 273 53.8
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 2.9e-45 186.0 264 50.4
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 3.2e-44 182.6 270 48.9
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 3.2e-44 182.6 261 49.0
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 1.2e-43 180.6 263 50.6
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 1.2e-43 180.6 263 50.2
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 1.2e-43 180.6 255 48.2
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 2.1e-43 179.9 263 49.0
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 1.8e-42 176.8 269 48.0
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 8.8e-42 174.5 256 49.6
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 2.0e-41 173.3 257 42.4
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 1.7e-40 170.2 264 46.6
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 8.3e-40 167.9 254 42.5
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 3.1e-39 166.0 258 48.1
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 3.1e-39 166.0 264 44.3
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 4.1e-39 165.6 257 49.0
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 5.4e-39 165.2 267 45.3
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 7.0e-39 164.9 272 46.0
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 9.1e-39 164.5 260 43.1
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 3.5e-38 162.5 248 48.8
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 1.0e-37 161.0 249 43.8
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.0e-37 161.0 283 44.9
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 2.2e-37 159.8 272 44.1
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 3.8e-37 159.1 253 44.3
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 3.8e-37 159.1 261 47.1
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 6.5e-37 158.3 265 46.0
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 1.1e-36 157.5 256 44.1
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 2.5e-36 156.4 253 48.6
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 1.2e-35 154.1 262 43.1
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 1.6e-35 153.7 246 47.2
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 2.1e-35 153.3 250 42.8
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 4.7e-35 152.1 276 45.3
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 6.1e-35 151.8 265 40.8
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 1.0e-34 151.0 257 42.8
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 1.4e-34 150.6 181 58.6
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 3.0e-34 149.4 256 44.5
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 8.8e-34 147.9 252 40.1
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 1.5e-33 147.1 254 44.9
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 2.6e-33 146.4 247 42.5
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 4.4e-33 145.6 249 42.2
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 5.7e-33 145.2 259 43.6
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 7.5e-33 144.8 250 42.0
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 7.5e-33 144.8 248 44.0
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 2.2e-32 143.3 265 43.4
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 3.7e-32 142.5 247 40.9
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 8.3e-32 141.4 256 42.6
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 8.3e-32 141.4 186 47.8
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 1.8e-31 140.2 261 42.5
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 1.8e-31 140.2 285 41.8
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 2.4e-31 139.8 266 39.8
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 3.1e-31 139.4 266 41.0
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 4.1e-31 139.0 258 42.2
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 4.1e-31 139.0 256 43.8
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 9.2e-31 137.9 248 43.1
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 1.6e-30 137.1 248 43.1
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 4.5e-30 135.6 248 43.1
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 4.5e-30 135.6 292 39.4
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 7.7e-30 134.8 268 42.9
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 7.7e-30 134.8 195 50.3
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.3e-29 134.0 206 43.7
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 6.6e-29 131.7 235 43.8
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 1.1e-28 131.0 256 41.0
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 1.5e-28 130.6 268 42.2
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 1.5e-28 130.6 173 53.2
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 1.6e-27 127.1 250 41.6
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 6.1e-27 125.2 212 43.4
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 6.1e-27 125.2 252 36.1
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 4.0e-26 122.5 216 41.7
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 4.0e-26 122.5 263 36.9
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 2.6e-25 119.8 206 43.7
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 3.4e-25 119.4 257 40.5
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 4.4e-25 119.0 183 48.6
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 9.8e-25 117.9 179 41.9
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 6.4e-24 115.2 255 37.3
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 8.3e-24 114.8 229 41.9
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.1e-23 114.4 276 38.4
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 5.4e-23 112.1 177 40.1
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 5.4e-23 112.1 260 34.6
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 1.6e-22 110.5 253 35.2
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 1.3e-21 107.5 282 34.8
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 2.3e-21 106.7 255 38.0
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 2.3e-21 106.7 303 35.6
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 3.0e-21 106.3 277 35.7
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 3.9e-21 105.9 234 39.3
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 3.9e-21 105.9 236 40.3
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 3.9e-21 105.9 215 40.5
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 3.9e-21 105.9 226 39.8
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 5.0e-21 105.5 248 36.3
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 6.6e-21 105.1 257 37.0
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 8.6e-21 104.8 235 38.3
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 8.6e-21 104.8 250 36.4
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 1.1e-20 104.4 261 37.5
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 1.1e-20 104.4 276 36.2
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 1.5e-20 104.0 267 34.1
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 3.3e-20 102.8 234 38.5
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 3.3e-20 102.8 261 38.3
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 7.3e-20 101.7 202 39.6
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 7.3e-20 101.7 138 42.0
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 9.5e-20 101.3 268 36.6
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 2.1e-19 100.1 234 39.7
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 2.8e-19 99.8 277 35.7
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 4.7e-19 99.0 250 36.0
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 4.7e-19 99.0 221 39.8
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 3.1e-18 96.3 247 33.6
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 5.2e-18 95.5 230 38.7
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 2.0e-17 93.6 192 38.0
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 3.4e-17 92.8 260 33.1
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 9.8e-17 91.3 183 38.3
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 9.8e-17 91.3 260 35.0
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 9.8e-17 91.3 251 34.3
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 3.7e-16 89.4 253 34.4
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 1.7e-13 80.5 178 34.3
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 3.3e-12 76.3 76 60.5
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 2.1e-11 73.6 248 32.3
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 6.2e-11 72.0 207 35.7
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 1.2e-09 67.8 214 35.5
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.0e-09 67.0 109 39.4
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 2.6e-09 66.6 145 34.5
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 3.4e-09 66.2 58 60.3
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 7.5e-09 65.1 184 33.2
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 9.8e-09 64.7 119 35.3
Actinidia35780 Actinidia chinensis HOM05D004782 ORTHO05D005498 2.2e-08 63.5 43 62.8
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 3.7e-08 62.8 241 29.9
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 4.9e-08 62.4 167 29.3
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 6.4e-08 62.0 101 39.6
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 1.1e-07 61.2 179 33.0
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.1e-07 61.2 98 39.8
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.4e-07 60.8 104 36.5
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 1.4e-07 60.8 178 33.1
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 1.4e-07 60.8 178 33.1
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 1.2e-06 57.8 66 50.0
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 4.6e-06 55.8 36 63.9
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 4.6e-06 55.8 36 63.9
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 4.6e-06 55.8 36 63.9
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 6.0e-06 55.5 36 63.9
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 7.8e-06 55.1 36 63.9
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 7.8e-06 55.1 36 63.9


User provided reference genes

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