Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 4.2e-198 694.5 350 100.0
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 4.2e-198 694.5 350 100.0
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 2.7e-157 558.9 365 77.8
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 2.6e-155 552.4 359 77.2
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 6.5e-151 537.7 360 77.2
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 1.2e-149 533.5 352 78.4
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 1.6e-149 533.1 354 78.0
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 3.6e-149 531.9 354 77.7
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 3.6e-149 531.9 354 77.7
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 3.6e-149 531.9 359 76.0
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 4.7e-149 531.6 354 78.0
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 8.0e-149 530.8 359 76.0
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 1.8e-140 503.1 362 69.6
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 9.8e-139 497.3 350 71.1
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 4.8e-138 495.0 362 69.1
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 1.4e-137 493.4 340 71.8
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 4.1e-137 491.9 360 70.0
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 5.4e-137 491.5 365 68.2
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 9.1e-137 490.7 342 71.1
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.6e-136 490.0 362 69.1
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 3.5e-136 488.8 358 69.6
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 1.3e-135 486.9 362 68.8
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 5.0e-135 485.0 365 67.4
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.6e-135 484.2 358 69.0
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 8.6e-135 484.2 362 68.0
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 1.1e-134 483.8 365 67.1
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-134 483.4 358 69.3
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.5e-134 483.4 358 69.3
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 3.3e-134 482.3 365 66.6
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 9.5e-134 480.7 373 64.9
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 2.1e-133 479.6 367 67.3
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 6.1e-133 478.0 361 65.4
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 8.0e-133 477.6 373 65.1
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 1.0e-132 477.2 362 67.4
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.4e-132 476.9 346 69.4
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.8e-132 476.5 367 65.9
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 2.3e-132 476.1 352 69.6
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 1.5e-131 473.4 360 66.7
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 2.6e-131 472.6 364 66.5
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 4.4e-131 471.9 414 61.1
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 7.5e-131 471.1 374 63.6
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 9.8e-131 470.7 361 65.7
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 9.8e-131 470.7 362 65.7
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 1.3e-130 470.3 362 64.9
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 1.3e-130 470.3 362 65.5
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 6.3e-130 468.0 363 65.3
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 6.3e-130 468.0 362 65.7
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 1.4e-129 466.8 362 66.9
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.8e-129 466.5 362 65.2
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 2.4e-129 466.1 373 63.0
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 7.0e-129 464.5 367 63.8
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 9.2e-129 464.2 362 63.8
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 9.2e-129 464.2 363 64.5
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 1.6e-128 463.4 373 64.1
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 1.6e-128 463.4 359 64.6
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 2.0e-128 463.0 367 64.9
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 2.0e-128 463.0 363 64.2
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 7.8e-128 461.1 362 64.1
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 3.8e-127 458.8 291 78.7
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 3.8e-127 458.8 359 64.1
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 5.0e-127 458.4 362 63.0
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.9e-126 456.4 357 64.7
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 4.3e-126 455.3 359 63.5
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 7.3e-126 454.5 366 63.9
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 9.5e-126 454.1 395 60.5
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 9.5e-126 454.1 400 60.2
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 1.2e-125 453.8 364 63.5
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 8.0e-125 451.1 364 63.2
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 1.0e-124 450.7 342 66.4
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 1.0e-124 450.7 359 62.4
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 1.8e-124 449.9 364 63.2
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.0e-124 448.7 384 60.7
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.8e-124 448.0 384 60.7
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 8.9e-124 447.6 320 68.8
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 1.2e-123 447.2 364 63.5
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 2.0e-123 446.4 364 63.5
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.0e-123 446.4 385 61.3
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.6e-123 446.0 384 60.4
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 5.8e-123 444.9 364 62.4
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 5.8e-123 444.9 347 65.4
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 7.5e-123 444.5 364 62.6
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 1.7e-122 443.4 364 62.9
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 2.9e-122 442.6 364 62.1
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 2.9e-122 442.6 364 62.9
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 2.4e-121 439.5 364 62.9
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 2.7e-120 436.0 364 62.1
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 3.5e-120 435.6 363 62.0
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 1.3e-119 433.7 401 59.4
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 3.0e-119 432.6 364 61.8
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 1.4e-116 423.7 327 63.9
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 4.0e-116 422.2 362 60.5
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 8.9e-116 421.0 326 64.7
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 4.4e-115 418.7 318 67.0
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 1.7e-114 416.8 356 59.6
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.1e-113 414.1 346 61.8
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 1.9e-113 413.3 360 58.9
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 6.0e-112 408.3 364 60.4
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.3e-111 407.1 352 59.4
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 3.9e-111 405.6 364 58.0
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 9.5e-110 401.0 353 59.8
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 9.5e-110 401.0 364 57.4
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.1e-108 396.0 354 58.2
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.2e-107 394.0 285 69.5
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 2.2e-106 389.8 374 59.1
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 1.9e-105 386.7 277 71.5
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 9.2e-105 384.4 275 69.1
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 6.2e-101 371.7 345 58.3
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 4.0e-100 369.0 345 58.0
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 8.9e-100 367.9 277 67.5
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.4e-99 365.9 384 53.9
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 5.8e-99 365.2 280 65.0
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 3.2e-97 359.4 280 67.1
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 2.3e-87 326.6 284 57.7
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.5e-86 323.9 272 61.4
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 1.9e-86 323.6 364 48.1
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 9.0e-84 314.7 366 46.7
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.6e-83 313.2 362 49.2
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 7.6e-83 311.6 335 49.0
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 3.8e-82 309.3 365 48.2
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 1.1e-81 307.8 336 47.0
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 2.1e-80 303.5 311 50.5
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 1.8e-79 300.4 367 48.5
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 3.0e-79 299.7 357 49.6
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 4.5e-51 206.1 340 38.2
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.2e-50 203.8 154 63.6
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 5.0e-42 176.0 368 33.2
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 3.9e-39 166.4 137 59.1
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.2e-35 154.8 143 60.1
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 8.5e-34 148.7 182 45.1
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.8e-31 141.0 119 58.0
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 1.0e-26 125.2 336 30.4
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.7e-26 124.4 85 69.4
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.2e-26 124.0 85 69.4
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 6.5e-26 122.5 106 62.3
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.2e-24 118.2 335 27.2
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 1.2e-24 118.2 113 60.2
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.1e-24 117.5 136 47.8
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.2e-23 112.8 88 65.9
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.0e-22 110.9 82 69.5
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 8.3e-21 105.5 89 64.0
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.9e-19 99.4 74 68.9
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.3e-18 97.4 73 68.5
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.3e-18 97.4 73 68.5
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.0e-18 96.3 74 67.6
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 5.0e-18 96.3 110 49.1
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.6e-18 95.9 73 67.1
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.6e-18 95.5 73 67.1
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 8.6e-18 95.5 110 49.1
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.5e-17 94.0 75 64.0
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.2e-17 93.2 71 64.8
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 5.5e-17 92.8 105 55.2
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.5e-17 92.8 74 63.5
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.2e-17 92.4 74 64.9
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.4e-15 88.2 83 56.6
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 9.8e-14 82.0 76 57.9
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.3e-13 81.6 96 53.1
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 1.8e-12 77.8 44 81.8
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.5e-11 73.6 51 76.5
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 7.8e-11 72.4 67 65.7
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 1.1e-09 68.6 57 66.7


User provided reference genes

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