Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 1.1e-192 676.4 339 100.0
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 1.6e-191 672.5 339 99.1
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 6.3e-135 484.6 339 72.0
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.7e-127 459.9 339 68.7
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 4.1e-126 455.3 339 66.7
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 6.6e-124 448.0 340 65.0
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 3.3e-123 445.7 340 64.1
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 1.2e-122 443.7 339 64.9
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.1e-122 443.0 341 64.2
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 6.2e-122 441.4 341 66.0
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 8.0e-122 441.0 339 65.5
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 5.2e-121 438.3 339 65.8
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 5.2e-121 438.3 332 66.0
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 7.5e-120 434.5 341 62.8
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 3.2e-118 429.1 330 66.1
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 6.8e-113 411.4 339 60.5
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 6.6e-108 394.8 339 58.7
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 4.3e-107 392.1 340 58.8
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 1.4e-105 387.1 340 57.9
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 2.6e-104 382.9 339 57.8
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 4.4e-104 382.1 342 57.3
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 7.6e-104 381.3 340 56.2
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 2.7e-101 372.9 350 54.9
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 3.0e-100 369.4 340 54.4
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 5.6e-99 365.2 340 55.6
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 3.6e-98 362.5 342 55.8
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 6.9e-97 358.2 341 53.7
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 4.4e-96 355.5 345 53.3
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 9.9e-96 354.4 346 52.3
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 1.4e-94 350.5 345 53.3
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 1.4e-94 350.5 343 52.5
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 4.2e-94 349.0 345 54.8
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 1.2e-93 347.4 344 52.0
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 3.0e-92 342.8 344 51.7
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 5.1e-92 342.0 344 52.3
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.9e-91 340.1 340 50.0
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 2.1e-90 336.7 347 52.4
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 1.1e-89 334.3 277 58.1
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 1.4e-89 334.0 344 52.0
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.8e-89 333.6 343 52.8
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.8e-89 333.6 344 52.6
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 4.0e-89 332.4 343 51.3
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 9.0e-89 331.3 340 51.5
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.2e-88 330.9 340 51.2
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 2.6e-88 329.7 347 50.7
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.6e-88 329.7 341 51.9
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 4.5e-88 328.9 336 50.6
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 5.8e-88 328.6 344 50.6
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 7.6e-88 328.2 345 53.0
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 9.9e-88 327.8 343 50.4
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 4.9e-87 325.5 344 51.2
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 4.2e-86 322.4 342 48.5
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 5.4e-86 322.0 356 51.4
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 3.5e-85 319.3 341 48.7
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 9.6e-83 311.2 344 46.2
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.1e-82 310.1 344 47.4
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.8e-82 309.7 344 47.1
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 2.8e-82 309.7 346 46.8
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 6.2e-82 308.5 346 46.8
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.1e-81 307.8 343 48.7
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.1e-81 307.8 344 50.3
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.4e-81 307.4 344 46.2
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 1.8e-81 307.0 350 50.3
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 3.1e-81 306.2 346 46.2
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 4.0e-81 305.8 342 49.4
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 5.3e-81 305.4 344 46.5
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 1.2e-80 304.3 346 47.7
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 4.5e-80 302.4 342 49.4
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 2.9e-79 299.7 346 46.5
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 2.9e-79 299.7 309 51.8
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 4.9e-79 298.9 347 45.0
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 4.9e-79 298.9 343 48.7
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 8.4e-79 298.1 342 47.4
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 8.4e-79 298.1 342 47.4
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 1.4e-78 297.4 337 46.6
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.4e-78 297.4 344 44.8
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 1.9e-78 297.0 325 47.1
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 7.1e-78 295.0 343 48.1
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 9.3e-78 294.7 346 46.5
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 1.6e-77 293.9 343 48.1
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 2.7e-77 293.1 343 46.9
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 2.7e-77 293.1 325 46.5
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 3.5e-77 292.7 346 47.7
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.3e-76 290.8 342 45.9
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.8e-76 290.4 340 47.6
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 3.9e-76 289.3 345 47.2
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 5.1e-76 288.9 343 47.8
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 6.7e-76 288.5 340 45.3
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 6.7e-76 288.5 343 46.6
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 4.3e-75 285.8 345 43.8
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 9.6e-75 284.6 319 47.0
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.6e-74 283.9 352 47.2
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 3.7e-74 282.7 345 46.4
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 6.2e-74 282.0 315 47.3
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.4e-73 280.8 342 45.3
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 3.1e-73 279.6 340 44.7
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 5.3e-73 278.9 332 47.9
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 9.0e-73 278.1 315 47.3
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 3.4e-72 276.2 293 47.8
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 1.0e-71 274.6 328 45.4
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.7e-71 273.9 292 49.0
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 3.8e-71 272.7 346 45.1
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 4.9e-71 272.3 309 49.2
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 3.2e-70 269.6 309 48.9
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 3.2e-70 269.6 310 46.5
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 2.1e-69 266.9 318 45.3
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 1.9e-67 260.4 347 45.0
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 3.7e-66 256.1 314 46.2
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.4e-65 254.2 346 42.5
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 9.0e-65 251.5 344 42.7
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 5.9e-64 248.8 323 44.0
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 1.7e-63 247.3 309 43.7
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 8.5e-63 245.0 344 42.4
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 8.5e-63 245.0 330 41.5
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.5e-62 243.4 348 40.5
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.4e-60 237.7 328 42.1
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 1.8e-60 237.3 350 43.4
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 2.3e-60 236.9 349 42.7
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 3.0e-60 236.5 349 42.1
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 3.0e-60 236.5 259 49.8
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 3.9e-60 236.1 344 43.3
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 8.8e-60 235.0 343 41.7
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 1.5e-59 234.2 286 46.9
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.1e-57 228.0 340 40.6
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 1.4e-57 227.6 344 40.1
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.4e-57 227.6 280 42.5
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 2.4e-57 226.9 296 44.3
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 7.7e-56 221.9 347 41.8
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 1.0e-55 221.5 288 43.1
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 1.7e-55 220.7 354 39.3
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 3.8e-55 219.5 344 37.8
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 6.5e-55 218.8 349 41.0
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 5.3e-49 199.1 272 41.5
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 1.7e-47 194.1 198 49.5
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 7.2e-46 188.7 138 60.9
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.7e-42 177.6 138 58.0
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 4.8e-42 176.0 209 42.1
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 8.2e-42 175.3 255 42.4
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 4.1e-41 172.9 130 58.5
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 7.0e-41 172.2 290 35.9
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 1.9e-38 164.1 338 35.8
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.5e-38 163.7 242 36.4
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 4.8e-34 149.4 295 33.9
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 4.1e-33 146.4 294 33.3
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 4.4e-27 126.3 99 57.6
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.2e-16 91.7 133 39.1
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 1.9e-09 67.8 215 29.3
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 9.5e-06 55.5 42 64.3
SMO117G0091 Selaginella moellendorffii HOM05D024261 ORTHO05D026617 9.5e-06 55.5 211 26.5


User provided reference genes

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