Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 0.0e+00 1611.7 894 100.0
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 0.0e+00 1608.2 894 99.8
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 0.0e+00 1261.1 900 79.0
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 0.0e+00 1258.8 902 75.9
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 0.0e+00 1242.6 902 76.1
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 0.0e+00 1240.7 899 76.8
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 0.0e+00 1228.8 900 77.1
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 0.0e+00 1218.4 900 77.0
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 0.0e+00 1193.3 888 75.1
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 0.0e+00 1186.4 901 74.3
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 0.0e+00 1171.8 901 74.1
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 0.0e+00 1163.3 864 75.3
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 0.0e+00 1161.0 869 75.1
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 0.0e+00 1158.7 900 73.3
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 0.0e+00 1154.8 899 71.9
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 0.0e+00 1146.3 899 72.1
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 0.0e+00 1145.2 902 72.7
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 0.0e+00 1142.9 907 71.1
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 0.0e+00 1121.7 906 73.7
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 0.0e+00 1112.8 866 72.3
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 8.4e-304 1047.0 914 66.0
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 3.0e-301 1038.5 916 65.3
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 3.9e-301 1038.1 909 68.1
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 8.7e-301 1036.9 913 64.6
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 1.1e-298 1030.0 917 65.6
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 1.6e-294 1016.1 917 65.5
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 2.7e-294 1015.4 917 67.3
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 1.0e-293 1013.4 902 65.0
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 5.7e-292 1007.7 912 64.1
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 7.4e-292 1007.3 914 65.2
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 3.8e-288 995.0 917 64.0
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 2.5e-287 992.3 914 64.0
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 7.2e-287 990.7 912 63.6
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.1e-286 989.2 916 62.0
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 3.0e-285 985.3 916 61.9
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 5.7e-284 981.1 912 66.1
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 7.0e-282 974.2 916 64.3
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 2.6e-281 972.2 913 62.5
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 3.5e-281 971.8 916 64.3
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 2.3e-277 959.1 912 63.8
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 2.8e-275 952.2 924 61.5
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 2.7e-273 945.7 924 61.1
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 1.3e-272 943.3 876 63.9
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 5.0e-272 941.4 917 59.0
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 1.6e-270 936.4 912 62.1
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 5.2e-269 931.4 874 63.8
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.7e-267 926.4 916 63.1
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 1.6e-265 919.8 897 59.0
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 3.5e-265 918.7 911 63.3
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 5.9e-265 917.9 916 60.3
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 1.0e-264 917.1 917 59.3
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 5.0e-264 914.8 928 58.1
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.6e-262 909.8 922 60.3
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 2.2e-259 899.4 918 59.5
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 2.2e-259 899.4 756 69.2
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 6.6e-256 887.9 919 56.9
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 8.6e-256 887.5 922 58.2
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.1e-255 887.1 896 60.3
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 2.5e-255 885.9 896 60.2
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 3.3e-255 885.6 919 56.8
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 3.3e-255 885.6 896 60.2
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 5.6e-255 884.8 927 60.2
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 1.6e-254 883.2 926 58.6
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 2.1e-254 882.9 926 58.6
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 4.7e-254 881.7 916 58.8
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 4.7e-254 881.7 923 58.0
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 4.0e-253 878.6 905 58.0
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 4.0e-253 878.6 923 57.9
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 5.2e-253 878.2 906 59.6
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 6.8e-253 877.9 926 59.7
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 1.2e-252 877.1 826 64.4
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 3.4e-252 875.5 910 58.9
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 1.3e-251 873.6 809 65.1
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 1.7e-251 873.2 864 63.5
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 2.9e-251 872.5 916 60.4
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 3.7e-251 872.1 924 56.3
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 4.9e-251 871.7 809 65.0
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 1.8e-250 869.8 794 63.6
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 5.4e-250 868.2 762 69.3
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 9.2e-250 867.5 908 56.1
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 1.9e-247 859.8 912 56.9
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 8.0e-246 854.4 912 59.5
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 1.4e-245 853.6 908 56.8
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 1.9e-242 843.2 912 54.4
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 7.8e-241 837.8 902 56.8
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 8.1e-238 827.8 876 58.4
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 2.6e-236 822.8 917 55.1
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 8.9e-229 797.7 927 53.6
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 2.9e-227 792.7 928 53.6
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 6.4e-227 791.6 914 53.7
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 2.1e-225 786.6 924 52.7
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 7.3e-223 778.1 917 54.7
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 8.9e-221 771.2 868 54.8
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.9e-218 763.5 917 57.0
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.8e-213 746.9 910 51.9
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 2.4e-210 736.5 905 51.9
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 4.6e-209 732.3 903 52.5
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 3.9e-208 729.2 901 55.3
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 8.7e-208 728.0 922 53.0
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 8.1e-206 721.5 921 54.4
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 1.4e-205 720.7 921 49.5
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 1.4e-205 720.7 900 55.7
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 3.1e-205 719.5 906 55.2
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 4.0e-205 719.2 921 49.6
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.2e-204 717.6 877 52.3
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 2.6e-204 716.5 878 54.8
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 4.9e-203 712.2 883 56.5
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 1.1e-202 711.1 913 52.0
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 3.2e-202 709.5 907 52.6
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 7.9e-201 704.9 863 55.2
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 1.6e-198 697.2 910 51.2
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 2.8e-198 696.4 779 53.7
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 3.7e-198 696.0 917 52.1
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 6.2e-198 695.3 892 53.9
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 1.5e-196 690.6 861 49.1
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 2.0e-196 690.3 905 50.4
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 4.9e-195 685.6 912 48.9
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 4.9e-195 685.6 912 48.2
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 3.9e-192 676.0 891 51.5
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 6.5e-187 658.7 858 50.1
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 1.3e-184 651.0 890 50.8
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.5e-183 647.5 896 48.4
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 2.8e-182 643.3 893 50.2
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 3.7e-182 642.9 904 49.6
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 6.3e-182 642.1 889 50.1
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 1.8e-181 640.6 861 49.1
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 6.9e-181 638.6 893 49.6
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 2.6e-180 636.7 879 50.3
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 3.4e-180 636.3 892 49.4
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 7.2e-178 628.6 744 55.9
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 9.4e-178 628.2 925 50.5
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 2.0e-175 620.5 906 48.1
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 2.6e-175 620.2 929 48.1
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 2.8e-174 616.7 925 50.2
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 1.4e-173 614.4 863 50.1
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 2.6e-172 610.1 942 47.0
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 2.3e-168 597.0 924 44.9
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 7.0e-165 585.5 947 46.9
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 9.1e-165 585.1 950 46.8
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 3.8e-163 579.7 823 51.8
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 8.0e-161 572.0 784 47.6
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 3.3e-159 566.6 948 46.0
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.4e-157 561.2 919 44.3
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 7.0e-157 558.9 878 46.1
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 1.6e-148 531.2 855 47.7
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 2.8e-145 520.4 756 49.7
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 1.3e-142 511.5 852 45.2
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 1.8e-133 481.1 900 45.1
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 1.1e-130 471.9 912 40.8
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 7.0e-125 452.6 526 55.7
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 2.0e-119 434.5 631 51.2
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 4.1e-117 426.8 631 49.9
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 7.8e-116 422.5 921 38.9
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 1.4e-109 401.7 322 65.5
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 2.4e-109 401.0 353 66.3
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 3.1e-104 384.0 946 39.2
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 2.9e-102 377.5 914 37.9
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 1.1e-101 375.6 941 38.2
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 5.4e-101 373.2 787 39.6
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 1.0e-99 369.0 651 48.5
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 3.0e-99 367.5 927 38.7
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 1.3e-94 352.1 925 38.6
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 1.1e-93 349.0 925 38.4
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.4e-80 305.4 900 35.9
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 6.5e-78 296.6 937 33.5
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 6.3e-73 280.0 1026 32.6
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 1.0e-67 262.7 378 48.4
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 1.1e-61 242.7 359 45.1
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 7.2e-61 240.0 454 42.7
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.4e-56 224.9 301 44.9
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 3.1e-56 224.6 362 41.2
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 5.0e-54 217.2 258 50.4
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 5.5e-53 213.8 302 44.4
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 5.7e-50 203.8 379 39.8
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 1.8e-48 198.7 262 63.4
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 1.1e-45 189.5 520 36.0
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 2.7e-44 184.9 97 97.9
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 4.7e-44 184.1 146 61.6
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 6.7e-43 180.3 324 38.6
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 7.5e-42 176.8 356 35.1
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 3.5e-39 167.9 109 76.1
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 7.5e-34 150.2 312 35.9
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.0e-14 86.7 246 33.3


User provided reference genes

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