Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 5.9e-297 1023.5 529 100.0
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 5.9e-289 996.9 529 97.4
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 7.4e-199 697.6 529 67.9
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 2.2e-195 686.0 530 67.4
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 4.0e-184 648.7 529 65.6
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 2.2e-182 642.9 519 64.9
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 9.1e-181 637.5 518 63.5
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 2.3e-179 632.9 520 64.0
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.0e-163 580.9 518 60.6
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 3.2e-133 479.6 532 52.6
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 3.3e-130 469.5 526 49.4
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 2.7e-124 449.9 535 48.0
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 4.8e-121 439.1 528 47.3
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 9.9e-119 431.4 533 45.6
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 3.2e-117 426.4 525 46.9
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 7.1e-117 425.2 526 43.7
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 2.3e-115 420.2 519 45.7
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 7.4e-114 415.2 530 44.9
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 3.4e-111 406.4 442 48.6
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 3.8e-110 402.9 545 43.7
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.4e-109 401.0 527 42.5
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.9e-107 392.9 530 44.2
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 2.0e-103 380.6 541 41.2
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 7.7e-103 378.6 538 42.4
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 3.8e-102 376.3 536 40.9
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 5.0e-102 375.9 534 41.0
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 4.2e-101 372.9 535 40.6
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 5.5e-101 372.5 475 43.4
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.1e-100 370.5 476 42.2
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.0e-99 366.7 534 41.0
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.0e-99 366.7 534 41.0
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 6.7e-99 365.5 470 43.2
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.1e-98 364.8 522 39.7
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 5.7e-98 362.5 527 40.2
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.7e-97 360.9 534 41.4
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 2.0e-95 354.0 540 39.4
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 2.2e-94 350.5 523 40.9
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 8.5e-94 348.6 539 40.3
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.2e-93 346.3 491 41.1
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 5.5e-93 345.9 536 40.3
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 9.4e-93 345.1 465 41.5
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.6e-92 344.4 470 41.5
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 6.7e-91 339.0 488 39.5
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.7e-89 334.3 532 38.0
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 6.3e-89 332.4 476 39.9
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 7.0e-88 328.9 473 40.4
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 9.1e-88 328.6 527 38.5
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 2.0e-87 327.4 446 41.3
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 2.0e-87 327.4 532 38.3
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.3e-86 324.7 514 37.5
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 1.3e-86 324.7 532 37.6
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 2.2e-86 323.9 532 37.8
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.2e-86 323.9 532 36.7
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 7.2e-85 318.9 539 36.9
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 3.3e-82 310.1 529 36.3
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 4.4e-82 309.7 291 56.0
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.7e-81 307.8 515 37.1
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 1.4e-80 304.7 521 37.2
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 4.2e-77 293.1 526 35.4
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 4.7e-76 289.7 492 34.1
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 1.0e-75 288.5 526 34.8
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 1.2e-74 285.0 525 35.0
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 1.9e-69 267.7 534 34.1
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 3.6e-68 263.5 483 35.2
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.3e-67 260.8 538 33.6
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 5.2e-67 259.6 541 34.2
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.8e-65 253.8 526 33.8
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 8.3e-65 252.3 531 33.1
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 1.4e-64 251.5 536 32.3
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 9.1e-64 248.8 510 32.9
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.7e-63 247.3 529 33.3
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 5.9e-63 246.1 497 32.0
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.3e-62 245.0 525 32.2
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 1.7e-62 244.6 537 33.9
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.9e-62 243.8 493 33.9
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.8e-62 243.4 493 33.3
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.0e-62 243.0 525 32.6
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 1.1e-61 241.9 512 32.0
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 2.1e-60 237.7 493 33.1
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 8.0e-60 235.7 493 31.8
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.3e-59 234.2 522 31.2
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 2.3e-59 234.2 498 31.7
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 2.3e-59 234.2 521 32.1
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 8.9e-59 232.3 285 42.1
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 4.4e-58 229.9 302 40.1
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 7.5e-58 229.2 514 30.2
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 7.5e-58 229.2 522 31.6
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 7.5e-58 229.2 276 42.8
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 9.8e-58 228.8 281 43.4
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 2.8e-57 227.3 427 33.5
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 3.7e-57 226.9 498 30.7
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 6.3e-57 226.1 481 33.3
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 6.3e-57 226.1 523 30.0
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 8.3e-57 225.7 536 32.6
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 1.4e-56 224.9 499 31.5
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 1.4e-56 224.9 505 34.1
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.8e-56 224.6 502 30.7
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 1.2e-55 221.9 525 31.6
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 1.2e-55 221.9 274 47.4
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 1.6e-55 221.5 391 35.3
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 3.5e-55 220.3 520 31.9
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 4.5e-55 219.9 501 30.3
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.8e-54 216.9 264 41.7
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 6.6e-54 216.1 386 35.0
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 2.5e-53 214.2 393 34.6
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 5.6e-53 213.0 521 30.5
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 2.1e-52 211.1 385 33.8
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 3.6e-52 210.3 507 30.0
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 3.1e-51 207.2 422 31.5
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 4.0e-51 206.8 506 28.5
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 5.2e-51 206.5 246 45.5
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 8.9e-51 205.7 486 28.6
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 8.9e-51 205.7 486 28.6
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.2e-50 205.3 507 27.8
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 2.0e-50 204.5 524 29.2
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 3.4e-50 203.8 506 33.2
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 4.4e-50 203.4 540 28.5
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.3e-49 201.8 407 30.7
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 4.1e-48 196.8 521 27.8
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 4.1e-48 196.8 521 27.8
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 7.0e-48 196.1 554 29.4
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 1.6e-47 194.9 424 29.5
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 3.9e-46 190.3 492 27.6
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.9e-45 188.0 548 28.3
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 9.5e-45 185.7 509 27.7
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 9.5e-45 185.7 433 28.9
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 1.6e-44 184.9 524 29.0
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 4.0e-43 180.3 261 38.3
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.0e-43 180.3 256 43.4
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 1.5e-42 178.3 464 27.6
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 5.8e-42 176.4 489 29.9
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.3e-41 175.3 469 26.7
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 1.3e-41 175.3 587 27.3
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 8.3e-41 172.6 503 27.2
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.1e-40 172.2 433 27.9
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.9e-40 171.4 480 30.6
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 3.2e-40 170.6 405 28.9
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 3.2e-40 170.6 245 41.2
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 3.5e-39 167.2 268 40.3
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 6.6e-38 162.9 512 27.0
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 1.1e-37 162.2 259 36.7
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 8.1e-36 156.0 520 26.7
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 8.1e-36 156.0 528 25.9
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 1.8e-35 154.8 491 26.3
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 2.3e-35 154.5 513 26.7
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 1.5e-34 151.8 493 27.0
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 3.7e-33 147.1 513 26.5
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 3.7e-33 147.1 309 35.0
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.4e-32 145.2 439 26.9
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 2.4e-32 144.4 510 25.9
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 2.4e-32 144.4 511 25.0
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 5.4e-32 143.3 513 25.9
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 2.1e-31 141.4 517 27.1
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 2.1e-31 141.4 258 37.2
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 3.9e-30 137.1 253 36.8
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 6.6e-30 136.3 183 42.6
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 2.8e-28 131.0 185 41.1
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 2.8e-28 131.0 451 26.2
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.9e-25 120.9 279 30.1
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 9.2e-24 115.9 256 29.7
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 9.2e-24 115.9 267 34.1
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 2.3e-22 111.3 131 41.2
TPR.G21889 Trifolium pratense HOM05D003538 ORTHO05D004376 3.9e-22 110.5 122 54.9
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 9.0e-19 99.4 277 27.8
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 4.4e-18 97.1 191 36.1
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 4.9e-17 93.6 393 21.4
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 1.9e-16 91.7 269 29.7
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 4.2e-16 90.5 116 38.8
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 7.1e-16 89.7 252 27.8
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 9.3e-16 89.4 259 28.6
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 3.5e-15 87.4 146 37.0
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.7e-14 85.1 247 26.7
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 8.1e-12 76.3 238 28.6
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 3.8e-09 67.4 127 29.9
arahy.Tifrunner.gnm1.ann1.4DL9G8 Arachis hypogaea HOM05D004293 ORTHO05D005044 1.6e-07 62.0 32 90.6
arahy.Tifrunner.gnm1.ann1.BT3C4B Arachis hypogaea HOM05D000237 ORTHO05D005044 2.1e-07 61.6 30 93.3
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 6.0e-07 60.1 475 22.3
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 1.3e-06 58.9 138 30.4


User provided reference genes

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