Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.603RL1 Arachis hypogaea HOM05D003817 ORTHO05D038881 8.9e-88 327.0 179 100.0
arahy.Tifrunner.gnm1.ann1.Q8LDW0 Arachis hypogaea HOM05D003817 ORTHO05D004790 6.9e-80 300.8 172 97.1
Phvul.001G097800 Phaseolus vulgaris HOM05D003817 ORTHO05D004790 1.3e-46 190.3 175 56.6
VMungo1383G3364 Vigna mungo HOM05D003817 ORTHO05D004790 2.9e-46 189.1 180 56.7
Glyma.19G107300 Glycine max HOM05D003817 ORTHO05D004790 1.4e-45 186.8 179 54.2
Glyma.16G044600 Glycine max HOM05D003817 ORTHO05D004790 1.6e-44 183.3 108 75.9
Ca_08241_v3 Cicer arietinum L. HOM05D003817 ORTHO05D004790 1.1e-42 177.2 155 57.4
Lj1g0025699 Lotus japonicus HOM05D003817 ORTHO05D004790 2.5e-42 176.0 108 74.1
TPR.G20658 Trifolium pratense HOM05D003817 ORTHO05D004790 2.8e-41 172.6 107 72.0
Medtr7g084850 Medicago truncatula HOM05D003817 ORTHO05D004790 8.2e-41 171.0 107 70.1
Eucgr.G01905 Eucalyptus grandis HOM05D003817 ORTHO05D004790 5.9e-39 164.9 108 69.4
Psat3g091520 Pisum sativum HOM05D003817 ORTHO05D004790 5.9e-39 164.9 107 70.1
MBI07_g24942_MAGBIO Magnolia biondii HOM05D003817 ORTHO05D004790 3.8e-38 162.2 106 71.7
Actinidia19535 Actinidia chinensis HOM05D003817 ORTHO05D004790 1.4e-37 160.2 109 71.6
Dinv33256 Davidia involucrata HOM05D003817 ORTHO05D004790 1.4e-37 160.2 108 65.7
Nn4g22048 Nelumbo nucifera HOM05D003817 ORTHO05D004790 1.4e-37 160.2 108 71.3
Ciclev10014353m.g Citrus clementina HOM05D003817 ORTHO05D004790 5.5e-37 158.3 108 65.7
Nn3g16184 Nelumbo nucifera HOM05D003817 ORTHO05D004790 7.2e-37 157.9 108 70.4
Ah.03g136510 Amaranthus hybridus HOM05D003817 ORTHO05D004790 9.4e-37 157.5 108 64.8
CANSAT64G2350 Cannabis sativa HOM05D003817 ORTHO05D004790 9.4e-37 157.5 108 68.5
CiPaw.03G114200 Carya illinoinensis HOM05D003817 ORTHO05D004790 9.4e-37 157.5 109 68.8
HanXRQChr17g0550861 Helianthus annuus HOM05D003817 ORTHO05D004790 1.2e-36 157.1 106 67.9
Manes.11G072000 Manihot esculenta HOM05D003817 ORTHO05D004790 1.2e-36 157.1 106 69.8
ATR0582G187 Amborella trichopoda HOM05D003817 ORTHO05D004790 2.1e-36 156.4 106 68.9
PGSC0003DMG400020231 Solanum tuberosum HOM05D003817 ORTHO05D004790 3.6e-36 155.6 108 63.9
BraA04t17268Z Brassica rapa HOM05D003817 ORTHO05D004790 6.1e-36 154.8 106 67.0
AUR62017459 Chenopodium quinoa HOM05D003817 ORTHO05D004790 6.1e-36 154.8 108 64.8
Thhalv10027656m.g Eutrema salsugineum HOM05D003817 ORTHO05D004790 6.1e-36 154.8 106 66.0
GSVIVG01032938001 Vitis vinifera HOM05D003817 ORTHO05D004790 6.1e-36 154.8 181 46.4
AUR62032527 Chenopodium quinoa HOM05D003817 ORTHO05D004790 7.9e-36 154.5 108 64.8
Prupe.3G315800 Prunus persica HOM05D003817 ORTHO05D004790 7.9e-36 154.5 106 67.0
PGR042G3037 Punica granatum HOM05D003817 ORTHO05D004790 7.9e-36 154.5 108 66.7
MD09G1000400 Malus domestica HOM05D003817 ORTHO05D004790 1.0e-35 154.1 106 67.0
Rhsim08G0037000 Rhododendron simsii HOM05D003817 ORTHO05D004790 1.0e-35 154.1 107 64.5
RcHm_v2.0_Chr2g0176771 Rosa chinensis HOM05D003817 ORTHO05D004790 1.4e-35 153.7 106 66.0
Carub.0007s3210 Capsella rubella HOM05D003817 ORTHO05D004790 1.8e-35 153.3 106 67.0
Cfa007126 Carpinus fangiana HOM05D003817 ORTHO05D004790 1.8e-35 153.3 109 62.4
COL.COLO4_13414 Corchorus olitorius HOM05D003817 ORTHO05D004790 2.3e-35 152.9 108 64.8
vmacro22928 Vaccinium macrocarpon HOM05D003817 ORTHO05D004790 2.3e-35 152.9 106 67.9
A04p16290 Brassica napus HOM05D003817 ORTHO05D004790 3.0e-35 152.5 106 66.0
Cpa.g.sc70.30 Carica papaya HOM05D003817 ORTHO05D004790 3.9e-35 152.1 107 67.3
DCAR_014314 Daucus carota HOM05D003817 ORTHO05D004790 3.9e-35 152.1 108 64.8
Oeu035283.1 Olea europaea HOM05D003817 ORTHO05D004790 3.9e-35 152.1 108 64.8
Hund12915 Selenicereus undatus HOM05D003817 ORTHO05D004790 3.9e-35 152.1 106 66.0
Gohir.A05G405300 Gossypium hirsutum HOM05D003817 ORTHO05D004790 5.1e-35 151.8 109 67.9
Gohir.D04G010300 Gossypium hirsutum HOM05D003817 ORTHO05D004790 5.1e-35 151.8 109 67.0
Gorai.012G012200 Gossypium raimondii HOM05D003817 ORTHO05D004790 5.1e-35 151.8 109 67.0
Lsat_1_v5_gn_3_105260 Lactuca sativa HOM05D003817 ORTHO05D004790 5.1e-35 151.8 108 64.8
AL7G45460 Arabidopsis lyrata HOM05D003817 ORTHO05D004790 6.7e-35 151.4 106 65.1
BcaB06g27038 Brassica carinata HOM05D003817 ORTHO05D004790 6.7e-35 151.4 106 65.1
Haze_14994 Corylus avellana HOM05D003817 ORTHO05D004790 6.7e-35 151.4 109 64.2
FvH4_6g54480 Fragaria vesca HOM05D003817 ORTHO05D004790 6.7e-35 151.4 106 64.2
FAN14G2381 Fragaria x ananassa HOM05D003817 ORTHO05D004790 6.7e-35 151.4 106 64.2
Lj1g0018654 Lotus japonicus HOM05D003817 ORTHO05D004790 6.7e-35 151.4 89 77.5
Sopen02g039280 Solanum pennellii HOM05D003817 ORTHO05D004790 6.7e-35 151.4 108 63.0
TAR622G0539 Trochodendron aralioides HOM05D003817 ORTHO05D004790 6.7e-35 151.4 106 67.0
BcaC02g08777 Brassica carinata HOM05D003817 ORTHO05D004790 8.8e-35 151.0 106 66.0
C04p50770 Brassica napus HOM05D003817 ORTHO05D004790 8.8e-35 151.0 106 66.0
CDE06G2431 Ceratophyllum demersum HOM05D003817 ORTHO05D004790 1.1e-34 150.6 108 63.0
Duzib128G1600 Durio zibethinus HOM05D003817 ORTHO05D004790 1.1e-34 150.6 109 67.9
Sp7g05640 Schrenkiella parvula HOM05D003817 ORTHO05D004790 1.1e-34 150.6 106 66.0
TAR371G0004 Trochodendron aralioides HOM05D003817 ORTHO05D004790 1.1e-34 150.6 108 64.8
Atru.chr6.2744 Acer truncatum HOM05D003817 ORTHO05D004790 1.5e-34 150.2 106 66.0
CSS0001904 Camellia sinensis var. sinensis HOM05D003817 ORTHO05D004790 1.5e-34 150.2 105 65.7
CSS0031457 Camellia sinensis var. sinensis HOM05D003817 ORTHO05D004790 1.5e-34 150.2 105 65.7
MD17G1003300 Malus domestica HOM05D003817 ORTHO05D004790 1.5e-34 150.2 106 66.0
CARHR216250 Cardamine hirsuta HOM05D003817 ORTHO05D004790 2.0e-34 149.8 106 63.2
FAN09G3990 Fragaria x ananassa HOM05D003817 ORTHO05D004790 2.0e-34 149.8 106 64.2
THA.LOC104809015 Tarenaya hassleriana HOM05D003817 ORTHO05D004790 2.0e-34 149.8 106 64.2
Ah.02g128710 Amaranthus hybridus HOM05D003817 ORTHO05D004790 2.6e-34 149.4 108 61.1
CAN.G473.168 Capsicum annuum HOM05D003817 ORTHO05D004790 2.6e-34 149.4 108 63.0
Nitab4.5_0009445g0010 Nicotiana tabacum HOM05D003817 ORTHO05D004790 2.6e-34 149.4 108 62.0
BolC4t26673H Brassica oleracea HOM05D003817 ORTHO05D004790 3.3e-34 149.1 106 65.1
MSTRG.3032 Avicennia marina HOM05D003817 ORTHO05D004790 4.4e-34 148.7 108 63.0
Thecc.04G053400 Theobroma cacao HOM05D003817 ORTHO05D004790 4.4e-34 148.7 109 65.1
MSTRG.24123 Avicennia marina HOM05D003817 ORTHO05D004790 5.7e-34 148.3 108 60.2
FAN05G4622 Fragaria x ananassa HOM05D003817 ORTHO05D004790 5.7e-34 148.3 106 62.3
QL02p068081 Quercus lobata HOM05D003817 ORTHO05D004790 5.7e-34 148.3 103 68.9
Sabra14G0106200 Salix brachista HOM05D003817 ORTHO05D004790 5.7e-34 148.3 108 63.9
Hund04148 Selenicereus undatus HOM05D003817 ORTHO05D004790 5.7e-34 148.3 108 61.1
Migut.F00005 Erythranthe guttata HOM05D003817 ORTHO05D004790 7.4e-34 147.9 106 65.1
PSO017G1153 Papaver somniferum HOM05D003817 ORTHO05D004790 7.4e-34 147.9 107 67.3
Potri.014G140900 Populus trichocarpa HOM05D003817 ORTHO05D004790 9.7e-34 147.5 108 63.0
AT5G36880 Arabidopsis thaliana HOM05D003817 ORTHO05D004790 1.3e-33 147.1 102 67.6
Cc07_g01460 Coffea canephora HOM05D003817 ORTHO05D004790 1.3e-33 147.1 108 60.2
Nitab4.5_0002901g0010 Nicotiana tabacum HOM05D003817 ORTHO05D004790 1.3e-33 147.1 108 61.1
THA.LOC104815254 Tarenaya hassleriana HOM05D003817 ORTHO05D004790 1.7e-33 146.7 102 64.7
TWI32G0714 Tripterygium wilfordii HOM05D003817 ORTHO05D004790 2.2e-33 146.4 110 63.6
Hma1.2p1_0421F.1_g149840 Hydrangea macrophylla HOM05D003817 ORTHO05D004790 3.7e-33 145.6 104 64.4
Solyc02g094640.4 Solanum lycopersicum HOM05D003817 ORTHO05D004790 3.7e-33 145.6 108 61.1
ECA246G1064 Erigeron canadensis HOM05D003817 ORTHO05D004790 6.3e-33 144.8 106 64.2
Cc11_g07450 Coffea canephora HOM05D003817 ORTHO05D004790 1.1e-32 144.1 108 62.0
SGA_v2.0_scaffold44G16959 Striga asiatica HOM05D003817 ORTHO05D004790 1.1e-32 144.1 106 66.0
HPP92_008234 Vanilla planifolia HOM05D003817 ORTHO05D004790 1.1e-32 144.1 102 66.7
Aqoxy5G02922 Aquilegia oxysepala HOM05D003817 ORTHO05D004790 1.4e-32 143.7 108 63.9
TAR374G0877 Trochodendron aralioides HOM05D003817 ORTHO05D004790 2.4e-32 142.9 106 62.3
PSO478G4644 Papaver somniferum HOM05D003817 ORTHO05D004790 7.0e-32 141.4 108 63.0
Sc03g0005450 Simmondsia chinensis HOM05D003817 ORTHO05D004790 9.1e-32 141.0 108 56.5
THA.LOC104809016 Tarenaya hassleriana HOM05D003817 ORTHO05D004790 1.5e-31 140.2 108 62.0
HPP92_023104 Vanilla planifolia HOM05D003817 ORTHO05D004790 1.5e-31 140.2 106 63.2
Manes.04G095800 Manihot esculenta HOM05D003817 ORTHO05D004790 2.6e-31 139.4 106 64.2
CDE02G2343 Ceratophyllum demersum HOM05D003817 ORTHO05D004790 5.9e-31 138.3 108 59.3
Duzib114G0127 Durio zibethinus HOM05D003817 ORTHO05D004790 7.7e-31 137.9 109 61.5
Lalb_Chr14g0364211 Lupinus albus HOM05D003817 ORTHO05D004790 1.0e-30 137.5 92 68.5
EL10Ac6g13914 Beta vulgaris HOM05D003817 ORTHO05D004790 2.7e-28 129.4 108 57.4
Zm00001eb242380 Zea mays HOM05D003817 ORTHO05D004790 2.7e-28 129.4 102 59.8
Manes.04G095900 Manihot esculenta HOM05D003817 ORTHO05D004790 4.7e-28 128.6 97 63.9
CDE05G3017 Ceratophyllum demersum HOM05D003817 ORTHO05D004790 8.0e-28 127.9 103 57.3
Gohir.D06G187600 Gossypium hirsutum HOM05D003817 ORTHO05D004790 1.4e-27 127.1 105 61.9
PGR142G3918 Punica granatum HOM05D003817 ORTHO05D004790 1.4e-27 127.1 83 72.3
Gorai.010G219900 Gossypium raimondii HOM05D003817 ORTHO05D004790 1.8e-27 126.7 105 61.9
Peaxi162Scf00420g00946 Petunia axillaris HOM05D003817 ORTHO05D004790 2.3e-27 126.3 83 67.5
Os02g0525900 Oryza sativa ssp. japonica HOM05D003817 ORTHO05D004790 3.9e-27 125.6 102 58.8
Aa31LG3G590 Aethionema arabicum HOM05D003817 ORTHO05D004790 6.7e-27 124.8 101 60.4
SalBow4G1463 Salvia bowleyana HOM05D003817 ORTHO05D004790 1.5e-26 123.6 81 72.8
Lj7C620T2 Lonicera japonica HOM05D003817 ORTHO05D004790 4.4e-26 122.1 107 56.1
MELO3C014749.2 Cucumis melo HOM05D003817 ORTHO05D004790 2.2e-25 119.8 99 58.6
ClCG05G012410 Citrullus lanatus HOM05D003817 ORTHO05D004790 2.8e-25 119.4 99 57.6
ECA238G4746 Erigeron canadensis HOM05D003817 ORTHO05D004790 6.3e-25 118.2 87 59.8
HanXRQChr07g0197951 Helianthus annuus HOM05D003817 ORTHO05D004790 8.2e-25 117.9 82 63.4
Lsat_1_v5_gn_2_95161 Lactuca sativa HOM05D003817 ORTHO05D004790 8.2e-25 117.9 108 54.6
BcaB04g18331 Brassica carinata HOM05D003817 ORTHO05D004790 3.1e-24 115.9 106 53.8
Sed0000094 Sechium edule HOM05D003817 ORTHO05D004790 3.1e-24 115.9 87 60.9
CsaV3_3G020130 Cucumis sativus L. HOM05D003817 ORTHO05D004790 7.0e-24 114.8 99 56.6
DCAR_000960 Daucus carota HOM05D003817 ORTHO05D004790 4.5e-23 112.1 87 58.6
Solyc07g017860.3 Solanum lycopersicum HOM05D003817 ORTHO05D004790 4.5e-23 112.1 80 62.5
Sopen07g006650 Solanum pennellii HOM05D003817 ORTHO05D004790 1.0e-22 110.9 80 61.2
Peaxi162Scf01054g00026 Petunia axillaris HOM05D003817 ORTHO05D004790 3.8e-22 109.0 82 59.8
Sed0021768 Sechium edule HOM05D003817 ORTHO05D004790 1.5e-21 107.1 87 62.1
Nitab4.5_0000055g0220 Nicotiana tabacum HOM05D003817 ORTHO05D004790 4.2e-21 105.5 80 65.0
unitig_736.g22469 Utricularia gibba HOM05D003817 ORTHO05D004790 4.2e-21 105.5 102 47.1
Nitab4.5_0006606g0020 Nicotiana tabacum HOM05D003817 ORTHO05D004790 1.2e-20 104.0 81 63.0
HanXRQChr07g0197971 Helianthus annuus HOM05D003817 ORTHO05D004790 3.6e-20 102.4 82 54.9
Os04g0404800 Oryza sativa ssp. japonica HOM05D003817 ORTHO05D004790 3.0e-19 99.4 83 59.0
SEGI_29007 Sequoiadendron giganteum HOM05D003817 ORTHO05D004790 1.5e-18 97.1 95 47.4
Pp3c1_12020 Physcomitrium patens HOM05D003817 ORTHO05D004790 4.8e-17 92.0 97 49.5
Pp3c11_11320 Physcomitrium patens HOM05D003817 ORTHO05D004790 1.2e-15 87.4 86 48.8
CsaV3_5G021900 Cucumis sativus L. HOM05D003817 ORTHO05D004790 1.6e-15 87.0 76 52.6
Mapoly0041s0059 Marchantia polymorpha HOM05D003817 ORTHO05D004790 1.6e-15 87.0 84 53.6
CBR_g19652 Chara braunii HOM05D003817 ORTHO05D004790 3.5e-15 85.9 75 56.0
Lalb_Chr22g0359421 Lupinus albus HOM05D003817 ORTHO05D004790 5.9e-15 85.1 45 77.8
ClCG01G007930 Citrullus lanatus HOM05D003817 ORTHO05D004790 1.0e-14 84.3 76 50.0
Sed0016846 Sechium edule HOM05D003817 ORTHO05D004790 1.5e-13 80.5 78 52.6
SMO361G0284 Selaginella moellendorffii HOM05D003817 ORTHO05D004790 2.5e-13 79.7 75 49.3
AagrBONN_evm.TU.Sc2ySwM_368.2817 Anthoceros agrestis HOM05D003817 ORTHO05D004790 7.2e-13 78.2 87 49.4
PGSC0003DMG400004100 Solanum tuberosum HOM05D003817 ORTHO05D004790 8.0e-12 74.7 45 66.7
MELO3C005081.2 Cucumis melo HOM05D003817 ORTHO05D004790 3.0e-11 72.8 68 48.5
Pp3c20_22210 Physcomitrium patens HOM05D003817 ORTHO05D004790 4.0e-11 72.4 70 51.4
Lalb_Chr22g0359411 Lupinus albus HOM05D003817 ORTHO05D038881 5.2e-11 72.0 58 60.3
Cre01.g055408 Chlamydomonas reinhardtii HOM05D003817 ORTHO05D004790 5.7e-10 68.6 54 55.6
vmacro22109 Vaccinium macrocarpon HOM05D003817 ORTHO05D426546 3.7e-09 65.9 105 39.0
CBR_g32518 Chara braunii HOM05D003817 ORTHO05D004790 4.1e-08 62.4 64 39.1
Lsat_1_v5_gn_3_116420 Lactuca sativa HOM05D001378 ORTHO05D001249 2.0e-07 60.1 44 65.9
PRCOL_00003027 Prasinoderma coloniale HOM05D003817 ORTHO05D004790 3.5e-07 59.3 61 45.9
Gohir.A06G180800 Gossypium hirsutum HOM05D003817 ORTHO05D004790 7.7e-07 58.2 59 54.2
Haze_26668 Corylus avellana HOM05D003817 ORTHO05D004790 1.7e-06 57.0 58 51.7
PRCOL_00001628 Prasinoderma coloniale HOM05D003817 ORTHO05D004790 2.3e-06 56.6 58 48.3
SMO137G0374 Selaginella moellendorffii HOM05D003817 ORTHO05D004790 5.0e-06 55.5 73 39.7


User provided reference genes

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