Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 1.7e-102 376.3 239 100.0
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 6.0e-71 271.6 190 86.3
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 3.7e-65 252.3 194 70.6
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 3.2e-64 249.2 231 63.6
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 1.2e-63 247.3 228 62.3
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 2.0e-63 246.5 239 60.3
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 1.0e-62 244.2 196 66.8
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 5.0e-62 241.9 196 69.9
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 1.6e-60 236.9 196 66.8
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 2.6e-58 229.6 185 68.1
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 9.9e-58 227.6 194 65.5
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 1.4e-56 223.8 193 65.3
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 9.2e-56 221.1 198 65.7
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 9.2e-56 221.1 195 65.6
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 4.6e-55 218.8 194 64.9
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 3.9e-54 215.7 197 62.4
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 1.1e-53 214.2 186 67.2
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.6e-52 210.3 192 63.5
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 2.1e-52 209.9 196 64.3
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 2.8e-52 209.5 203 63.1
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 2.8e-52 209.5 177 68.4
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 2.8e-52 209.5 193 63.2
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 3.6e-52 209.1 189 64.6
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 3.6e-52 209.1 201 60.2
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 1.1e-51 207.6 229 54.6
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 1.4e-51 207.2 244 52.0
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 1.4e-51 207.2 199 63.3
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 1.4e-51 207.2 191 64.4
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 3.1e-51 206.1 191 61.8
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 5.2e-51 205.3 196 63.8
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 8.9e-51 204.5 212 59.4
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 1.2e-50 204.1 196 61.7
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 2.0e-50 203.4 200 62.0
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 3.4e-50 202.6 197 59.4
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 5.8e-50 201.8 187 62.0
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 7.6e-50 201.4 197 61.9
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 9.9e-50 201.1 193 59.6
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 1.3e-49 200.7 191 61.3
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 1.7e-49 200.3 188 58.5
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 2.2e-49 199.9 192 60.9
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 2.2e-49 199.9 189 56.6
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 3.8e-49 199.1 190 60.0
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 6.4e-49 198.4 191 59.7
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 1.4e-48 197.2 197 57.9
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 2.4e-48 196.4 189 62.4
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 9.2e-48 194.5 199 58.8
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 1.6e-47 193.7 189 57.1
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 2.1e-47 193.4 199 58.8
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 2.7e-47 193.0 229 48.5
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 2.7e-47 193.0 188 56.9
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 3.5e-47 192.6 190 58.9
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 3.5e-47 192.6 193 58.0
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 3.5e-47 192.6 192 59.4
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 4.6e-47 192.2 202 57.4
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 1.3e-46 190.7 179 60.9
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 1.3e-46 190.7 196 58.7
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 1.7e-46 190.3 159 65.4
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 1.7e-46 190.3 193 58.5
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 3.0e-46 189.5 184 59.2
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 6.6e-46 188.3 191 57.6
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 8.7e-46 188.0 190 60.0
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.9e-45 186.8 199 56.8
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 2.5e-45 186.4 195 59.0
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 3.3e-45 186.0 191 57.6
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 3.3e-45 186.0 188 55.3
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 3.3e-45 186.0 191 61.3
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 4.3e-45 185.7 184 59.2
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 4.3e-45 185.7 188 56.9
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 4.3e-45 185.7 189 58.7
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 7.3e-45 184.9 223 52.5
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 9.6e-45 184.5 190 55.8
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.1e-44 183.3 188 56.4
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 2.1e-44 183.3 195 56.9
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 2.8e-44 183.0 184 58.7
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.8e-44 183.0 188 55.9
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 3.6e-44 182.6 188 54.8
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 6.2e-44 181.8 201 56.2
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 8.1e-44 181.4 202 53.0
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 1.1e-43 181.0 175 62.9
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 9.0e-43 177.9 182 59.9
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 2.0e-42 176.8 245 49.0
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 1.7e-41 173.7 185 56.8
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 2.4e-40 169.9 193 55.4
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 4.2e-40 169.1 257 44.4
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 7.1e-40 168.3 163 59.5
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 9.3e-40 167.9 194 53.6
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 9.3e-40 167.9 188 54.8
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.2e-39 167.5 195 53.3
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 1.6e-39 167.2 183 55.7
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 2.1e-39 166.8 197 54.8
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 2.7e-39 166.4 184 53.8
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 2.7e-39 166.4 172 55.2
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 3.5e-39 166.0 189 53.4
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 6.0e-39 165.2 193 54.9
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 1.0e-38 164.5 189 52.4
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 1.3e-38 164.1 195 53.3
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 1.7e-38 163.7 188 49.5
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 3.0e-38 162.9 191 54.5
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 1.1e-37 161.0 190 54.7
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 1.9e-37 160.2 192 50.5
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 4.3e-37 159.1 188 52.7
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 5.6e-37 158.7 197 53.3
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 9.6e-37 157.9 200 51.5
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 1.3e-36 157.5 193 53.4
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 1.8e-35 153.7 179 54.7
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 1.8e-35 153.7 182 54.4
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 1.8e-35 153.7 182 54.4
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 7.6e-34 148.3 179 53.1
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 7.6e-34 148.3 179 53.1
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.7e-33 147.1 191 52.4
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 2.2e-33 146.7 200 50.0
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 6.4e-33 145.2 193 51.3
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 2.4e-32 143.3 177 49.7
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 3.2e-32 142.9 183 52.5
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 9.3e-32 141.4 200 48.0
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 9.3e-32 141.4 200 48.0
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 9.3e-32 141.4 200 48.0
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 3.0e-30 136.3 188 48.9
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 3.9e-30 136.0 149 54.4
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 1.5e-29 134.0 191 48.2
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 3.1e-27 126.3 132 58.3
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 3.1e-27 126.3 189 47.6
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 9.0e-27 124.8 103 70.9
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 2.6e-26 123.2 188 45.7
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 3.4e-26 122.9 121 58.7
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 2.9e-25 119.8 188 44.7
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 6.4e-25 118.6 189 41.3
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 6.4e-25 118.6 192 43.2
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 1.2e-23 114.4 177 42.9
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 2.3e-22 110.2 232 37.9
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 9.6e-21 104.8 127 51.2
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.3e-20 104.4 120 54.2
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 4.0e-19 99.4 105 55.2
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 9.0e-19 98.2 89 61.8
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 1.2e-18 97.8 165 36.4
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 1.7e-17 94.0 121 52.9
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 3.2e-16 89.7 148 39.9
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 6.7e-14 82.0 69 62.3
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 6.7e-14 82.0 81 56.8
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 6.7e-14 82.0 111 49.5
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 5.7e-13 79.0 148 37.8
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 1.8e-11 73.9 139 33.8
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 5.3e-11 72.4 68 50.0
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 6.9e-11 72.0 87 54.0
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 2.0e-10 70.5 71 53.5
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 7.7e-10 68.6 70 54.3
DCAR_003417 Daucus carota HOM05D004935 ORTHO05D005676 1.1e-08 64.7 72 48.6
EL10Ac2g03210 Beta vulgaris HOM05D004935 ORTHO05D005676 7.9e-07 58.5 46 54.3
SEGI_39153 Sequoiadendron giganteum HOM05D004935 ORTHO05D005676 3.0e-06 56.6 114 37.7


User provided reference genes

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