Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 2.9e-38 161.4 79 100.0
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 3.2e-37 157.9 79 97.5
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 3.4e-31 137.9 79 82.3
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 8.4e-30 133.3 79 79.7
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 1.1e-29 132.9 79 79.7
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 2.4e-29 131.7 79 77.2
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 2.4e-29 131.7 79 78.5
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 4.1e-29 131.0 79 77.2
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 1.6e-28 129.0 79 77.2
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.4e-24 115.2 79 67.1
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 5.2e-24 114.0 79 67.1
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 6.9e-24 113.6 79 67.1
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 6.9e-24 113.6 79 65.8
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 9.0e-24 113.2 79 64.6
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.2e-23 112.8 79 64.6
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 1.2e-23 112.8 78 65.4
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 2.0e-23 112.1 79 64.6
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 2.6e-23 111.7 79 65.8
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 2.6e-23 111.7 79 63.3
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 2.6e-23 111.7 79 63.3
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 3.4e-23 111.3 79 64.6
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 3.4e-23 111.3 79 64.6
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 4.4e-23 110.9 79 63.3
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 5.8e-23 110.5 76 64.5
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 7.6e-23 110.2 79 62.0
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 7.6e-23 110.2 79 60.8
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 7.6e-23 110.2 79 63.3
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 7.6e-23 110.2 79 63.3
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 9.9e-23 109.8 77 62.3
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 9.9e-23 109.8 79 62.0
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 9.9e-23 109.8 79 68.4
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 1.3e-22 109.4 76 64.5
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 1.3e-22 109.4 79 62.0
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 1.3e-22 109.4 79 63.3
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.3e-22 109.4 79 62.0
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.3e-22 109.4 79 63.3
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 1.3e-22 109.4 79 63.3
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.7e-22 109.0 79 64.6
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.7e-22 109.0 79 64.6
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.7e-22 109.0 77 63.6
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 2.2e-22 108.6 79 63.3
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 2.9e-22 108.2 79 62.0
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 2.9e-22 108.2 79 60.8
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 2.9e-22 108.2 79 63.3
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 3.8e-22 107.8 77 63.6
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 3.8e-22 107.8 76 64.5
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 4.9e-22 107.5 79 60.8
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 4.9e-22 107.5 79 62.0
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 8.4e-22 106.7 79 60.8
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 8.4e-22 106.7 79 59.5
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 8.4e-22 106.7 79 59.5
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 1.1e-21 106.3 79 62.0
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 1.1e-21 106.3 79 60.8
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 1.1e-21 106.3 79 59.5
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 1.1e-21 106.3 79 58.2
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 1.4e-21 105.9 79 57.0
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 1.4e-21 105.9 74 63.5
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 1.9e-21 105.5 79 60.8
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.9e-21 105.5 79 62.0
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 1.9e-21 105.5 79 59.5
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.9e-21 105.5 77 63.6
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 2.4e-21 105.1 79 63.3
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 2.4e-21 105.1 73 63.0
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 3.2e-21 104.8 73 64.4
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 3.2e-21 104.8 73 64.4
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 3.2e-21 104.8 79 60.8
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 3.2e-21 104.8 79 57.0
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 3.2e-21 104.8 75 60.0
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 4.2e-21 104.4 79 60.8
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 5.4e-21 104.0 79 59.5
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 7.1e-21 103.6 77 61.0
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 7.1e-21 103.6 77 57.1
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 7.1e-21 103.6 74 62.2
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 7.1e-21 103.6 74 62.2
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 7.1e-21 103.6 73 63.0
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 9.3e-21 103.2 79 58.2
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 9.3e-21 103.2 75 58.7
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 9.3e-21 103.2 79 60.8
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 9.3e-21 103.2 79 58.2
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 9.3e-21 103.2 79 59.5
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 1.2e-20 102.8 76 61.8
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.6e-20 102.4 72 63.9
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 2.1e-20 102.1 79 57.0
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 2.1e-20 102.1 76 60.5
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 2.1e-20 102.1 73 61.6
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 2.7e-20 101.7 79 57.0
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 3.5e-20 101.3 75 60.0
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.0e-19 99.8 86 58.1
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 1.0e-19 99.8 78 57.7
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 1.0e-19 99.8 78 57.7
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.3e-19 99.4 101 51.5
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 1.7e-19 99.0 76 55.3
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.3e-19 98.6 63 68.3
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 3.0e-19 98.2 78 59.0
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 6.6e-19 97.1 76 55.3
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 6.6e-19 97.1 63 66.7
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 6.6e-19 97.1 76 59.2
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.1e-18 96.3 78 56.4
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.1e-18 96.3 69 59.4
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 1.1e-18 96.3 57 75.4
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.5e-18 95.9 64 65.6
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.9e-18 95.5 69 59.4
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 3.3e-18 94.7 77 55.8
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 3.3e-18 94.7 70 57.1
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 4.3e-18 94.4 59 69.5
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 4.3e-18 94.4 63 66.7
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 4.3e-18 94.4 78 55.1
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 9.6e-18 93.2 60 66.7
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.6e-17 92.4 63 63.5
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 2.1e-17 92.0 76 53.9
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 3.6e-17 91.3 79 53.2
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 3.6e-17 91.3 79 53.2
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 3.6e-17 91.3 79 53.2
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 4.8e-17 90.9 66 60.6
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 8.1e-17 90.1 79 51.9
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 8.1e-17 90.1 57 70.2
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 8.1e-17 90.1 66 60.6
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 1.1e-16 89.7 79 51.9
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 1.1e-16 89.7 75 56.0
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 1.1e-16 89.7 75 56.0
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 1.1e-16 89.7 75 56.0
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 1.1e-16 89.7 75 56.0
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.8e-16 89.0 76 51.3
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.8e-16 89.0 79 51.9
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 2.4e-16 88.6 79 50.6
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 2.4e-16 88.6 61 63.9
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 4.0e-16 87.8 70 57.1
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 4.0e-16 87.8 76 55.3
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 4.0e-16 87.8 53 71.7
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 5.3e-16 87.4 52 75.0
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 5.3e-16 87.4 76 53.9
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 2.9e-14 81.6 59 57.6
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 3.8e-14 81.3 54 63.0
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 4.9e-14 80.9 59 57.6
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 8.4e-14 80.1 63 57.1
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 8.4e-14 80.1 63 57.1
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 1.9e-13 79.0 74 47.3
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 5.4e-13 77.4 67 43.3
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 3.5e-12 74.7 65 46.2
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 6.2e-09 63.9 61 45.9
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 4.0e-08 61.2 70 41.4
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 5.3e-08 60.8 77 41.6
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 9.0e-08 60.1 65 44.6
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 5.8e-07 57.4 48 52.1
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 5.8e-07 57.4 70 38.6


User provided reference genes

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