Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 2377.8 1213 100.0
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 2360.5 1213 99.5
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 2053.1 1214 87.5
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 2050.0 1236 86.2
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 2036.2 1236 85.9
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 2025.4 1212 86.5
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 2014.6 1206 87.1
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 2014.2 1213 84.8
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 2010.7 1209 85.9
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 2001.1 1207 86.3
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1953.3 1271 80.5
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1919.4 1209 82.1
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1916.4 1210 81.6
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1907.1 1207 81.0
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1903.6 1207 80.9
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1901.3 1241 79.9
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1890.5 1208 80.5
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1885.9 1208 80.4
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1885.9 1207 81.0
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1873.2 1218 79.7
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1870.1 1212 80.6
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1867.4 1208 79.8
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1864.4 1208 79.8
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1862.8 1209 79.3
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1862.4 1218 79.6
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1849.3 1208 79.4
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1849.3 1111 85.6
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1845.1 1252 77.3
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1844.3 1256 77.1
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1843.2 1256 77.1
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1840.9 1208 78.7
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1840.9 1207 78.6
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1838.2 1256 77.1
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1837.4 1208 78.1
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1833.5 1156 81.6
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1830.8 1205 78.0
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1827.8 1208 78.6
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1827.8 1212 78.2
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1827.4 1208 78.0
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1824.3 1239 76.4
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1820.4 1209 77.8
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1812.0 1156 81.3
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1811.6 1156 81.1
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1810.4 1156 81.2
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1808.9 1156 81.3
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1807.7 1209 77.6
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1795.0 1208 76.7
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1789.6 1207 77.7
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1774.6 1209 76.8
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1766.1 1213 76.4
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1765.0 1211 75.8
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1763.4 1156 79.2
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1763.0 1265 73.3
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1761.5 1210 75.8
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1756.5 1211 76.9
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1750.7 1208 75.2
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1747.3 1211 75.2
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1744.9 1208 75.2
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1742.6 1248 74.5
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1737.2 1213 74.4
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1735.7 1248 73.9
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1735.3 1208 74.9
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1734.2 1210 75.0
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1732.6 1208 74.6
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1729.5 1208 74.5
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1726.1 1156 78.4
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1725.7 1195 75.1
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1723.4 1156 78.4
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1721.8 1206 73.8
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1721.1 1207 74.1
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1713.0 1210 74.0
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1704.5 1112 78.5
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1704.1 1220 73.9
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1702.2 1239 73.1
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1700.6 1211 73.2
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1699.1 1207 73.1
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1696.4 1208 73.6
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1694.1 1208 73.8
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1693.3 1208 73.6
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1692.2 1213 73.5
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1689.9 1230 73.1
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1689.5 1214 72.5
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1689.1 1212 73.0
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1688.3 1219 73.8
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1688.3 1208 73.5
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1687.5 1226 72.8
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1687.2 1216 73.7
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1686.8 1212 74.1
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1686.0 1244 71.6
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1685.6 1213 73.5
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1685.2 1209 73.5
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1684.5 1212 72.9
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1684.1 1208 73.6
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1681.0 1268 70.3
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1678.7 1213 72.6
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1675.6 1215 73.2
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1673.3 1215 73.2
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1668.7 1211 72.7
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1667.5 1207 73.0
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1667.1 1210 73.5
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1662.9 1161 74.5
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1649.4 1216 72.4
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1647.9 1219 71.5
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1645.9 1210 73.0
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1644.0 1216 72.5
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1636.3 1214 71.5
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1629.8 1214 70.5
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1618.2 1217 70.6
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1605.1 1160 71.7
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1601.6 1212 71.5
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1599.7 1231 70.1
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1598.6 1223 70.8
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1568.1 1211 68.3
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1566.6 1214 68.7
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1564.7 1219 68.1
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1538.9 1217 67.1
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1536.5 1209 67.3
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1522.7 1122 72.0
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1518.1 971 79.5
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1488.8 971 78.7
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1483.8 994 77.3
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1469.5 1216 65.6
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1429.1 1047 73.6
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1423.3 1075 70.5
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1342.8 970 73.1
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1286.2 972 71.5
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1285.8 900 74.3
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1281.2 1003 69.2
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1269.2 820 81.2
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1241.1 994 68.4
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1229.2 1211 58.2
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1189.1 831 75.2
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1187.2 827 75.2
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1161.0 832 73.4
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 2.6e-303 1045.8 736 75.3
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 4.1e-301 1038.5 1205 52.7
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 2.3e-280 969.5 1211 47.0
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 4.0e-280 968.8 1258 46.1
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 4.5e-276 955.3 563 85.8
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 1.1e-266 924.1 604 78.1
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.1e-252 876.7 732 66.1
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.6e-191 673.7 455 74.9
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 2.7e-175 620.5 383 82.8
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 5.8e-146 523.1 641 50.4
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 7.5e-138 496.1 924 39.6
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 5.4e-136 490.0 330 74.8
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 2.6e-130 471.1 330 73.3
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 5.8e-130 469.9 330 73.3
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.6e-119 435.3 821 36.3
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.4e-115 422.2 297 75.4
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 9.6e-109 399.4 1343 28.7
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 8.5e-89 333.2 512 42.4
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 7.2e-88 330.1 252 67.5
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 2.4e-83 315.1 282 64.5
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 9.1e-83 313.2 203 76.4
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 8.8e-78 296.6 217 71.4
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 7.4e-77 293.5 182 80.8
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.4e-72 279.3 260 61.9
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 2.0e-69 268.9 198 68.7
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 1.3e-65 256.1 144 88.2
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 1.9e-64 252.3 181 71.8
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 1.2e-63 249.6 198 69.7
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 2.6e-61 241.9 178 70.8
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 3.1e-51 208.4 132 81.1
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 2.5e-48 198.7 118 87.3
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 6.8e-46 190.7 125 76.0
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 4.4e-37 161.4 92 90.2
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 1.5e-32 146.4 86 84.9
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 5.6e-32 144.4 91 79.1
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 5.6e-32 144.4 91 79.1
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 7.3e-24 117.5 78 78.2
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 8.3e-20 104.0 59 84.7
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 7.8e-18 97.4 65 76.9
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 3.3e-16 92.0 69 62.3
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 3.6e-15 88.6 108 50.9
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 1.4e-14 86.7 81 53.1
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 1.5e-13 83.2 96 42.7
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 2.4e-06 59.3 59 54.2
Lsat_1_v5_gn_6_60101 Lactuca sativa HOM05D003952 ORTHO05D230796 5.2e-06 58.2 32 75.0


User provided reference genes

Program Settings