Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.5IVJ41 Arachis hypogaea HOM05D004310 ORTHO05D005403 4.4e-104 381.3 197 100.0
arahy.Tifrunner.gnm1.ann1.2ZJI0H Arachis hypogaea HOM05D002083 ORTHO05D000332 1.4e-38 163.7 94 91.5
arahy.Tifrunner.gnm1.ann1.ID0PC5 Arachis hypogaea HOM05D002083 ORTHO05D000332 3.5e-37 159.1 94 89.4
arahy.Tifrunner.gnm1.ann1.X6D8S8 Arachis hypogaea HOM05D002083 ORTHO05D000332 1.5e-32 143.7 91 84.6
arahy.Tifrunner.gnm1.ann1.NYAQ8K Arachis hypogaea HOM05D002083 ORTHO05D000332 1.6e-29 133.7 89 82.0
arahy.Tifrunner.gnm1.ann1.BIP3BJ Arachis hypogaea HOM05D004310 ORTHO05D005403 1.8e-28 130.2 77 89.6
arahy.Tifrunner.gnm1.ann1.Z66XJ9 Arachis hypogaea HOM05D004310 ORTHO05D005403 1.8e-28 130.2 77 89.6
arahy.Tifrunner.gnm1.ann1.I309N8 Arachis hypogaea HOM05D002083 ORTHO05D000332 4.3e-27 125.6 92 76.1
arahy.Tifrunner.gnm1.ann1.LY1RHD Arachis hypogaea HOM05D004310 ORTHO05D005403 1.5e-24 117.1 76 86.8
arahy.Tifrunner.gnm1.ann1.FB4WK1 Arachis hypogaea HOM05D004310 ORTHO05D005403 7.7e-24 114.8 65 92.3
arahy.Tifrunner.gnm1.ann1.FLDD49 Arachis hypogaea HOM05D004310 ORTHO05D005403 7.2e-22 108.2 72 80.6
Lj1g0017908 Lotus japonicus HOM05D002083 ORTHO05D000332 3.0e-20 102.8 93 62.4
Glyma.19G165000 Glycine max HOM05D002083 ORTHO05D000332 2.0e-19 100.1 93 61.3
Glyma.03G163600 Glycine max HOM05D002083 ORTHO05D000332 2.6e-19 99.8 91 61.5
Phvul.001G161300 Phaseolus vulgaris HOM05D002083 ORTHO05D000332 2.8e-18 96.3 92 58.7
TPR.G22313 Trifolium pratense HOM05D002083 ORTHO05D000332 3.7e-18 95.9 104 53.8
Lalb_Chr25g0289951 Lupinus albus HOM05D002083 ORTHO05D000332 8.2e-18 94.7 95 56.8
Medtr7g097010 Medicago truncatula HOM05D002083 ORTHO05D000332 1.4e-17 94.0 106 52.8
Lalb_Chr04g0261561 Lupinus albus HOM05D004310 ORTHO05D005403 4.1e-17 92.4 74 70.3
Ca_08678_v3 Cicer arietinum L. HOM05D002083 ORTHO05D000332 5.3e-17 92.0 95 55.8
Ca_08714_v3 Cicer arietinum L. HOM05D002083 ORTHO05D000332 5.3e-17 92.0 95 55.8
Psat0s1923g0120 Pisum sativum HOM05D002083 ORTHO05D000332 7.0e-17 91.7 106 50.9
VMungo1383G2768 Vigna mungo HOM05D002083 ORTHO05D000332 2.0e-16 90.1 92 54.3
Lalb_Chr18g0044401 Lupinus albus HOM05D004310 ORTHO05D005403 2.6e-16 89.7 77 67.5
GSVIVG01028344001 Vitis vinifera HOM05D002083 ORTHO05D000332 7.7e-16 88.2 94 50.0
Lj1g0027458 Lotus japonicus HOM05D004310 ORTHO05D005403 3.8e-15 85.9 141 44.0
Cfa002433 Carpinus fangiana HOM05D002083 ORTHO05D000332 1.6e-13 80.5 92 47.8
Haze_24639 Corylus avellana HOM05D002083 ORTHO05D000332 1.6e-13 80.5 92 48.9
Ciclev10023554m.g Citrus clementina HOM05D002083 ORTHO05D000332 2.7e-13 79.7 116 39.7
MD01G1080000 Malus domestica HOM05D004310 ORTHO05D005403 1.4e-12 77.4 77 59.7
TWI12G1151 Tripterygium wilfordii HOM05D002083 ORTHO05D000332 1.8e-12 77.0 88 52.3
vmacro14819 Vaccinium macrocarpon HOM05D002083 ORTHO05D000332 2.3e-12 76.6 94 44.7
MD07G1148800 Malus domestica HOM05D004310 ORTHO05D005403 3.0e-12 76.3 76 59.2
RcHm_v2.0_Chr6g0287961 Rosa chinensis HOM05D002083 ORTHO05D000332 3.0e-12 76.3 95 49.5
TWI14G0601 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 3.0e-12 76.3 72 61.1
FAN15G1567 Fragaria x ananassa HOM05D002083 ORTHO05D000332 3.9e-12 75.9 104 47.1
Prupe.8G222800 Prunus persica HOM05D002083 ORTHO05D000332 3.9e-12 75.9 82 51.2
CiPaw.03G265000 Carya illinoinensis HOM05D002083 ORTHO05D000332 5.2e-12 75.5 97 45.4
CiPaw.02G040300 Carya illinoinensis HOM05D004310 ORTHO05D005403 6.7e-12 75.1 75 57.3
ClCG06G001190 Citrullus lanatus HOM05D004310 ORTHO05D005403 8.8e-12 74.7 72 59.7
Prupe.2G187300 Prunus persica HOM05D004310 ORTHO05D005403 8.8e-12 74.7 72 61.1
Rhsim01G0263000 Rhododendron simsii HOM05D002083 ORTHO05D000332 8.8e-12 74.7 94 43.6
FAN27G2072 Fragaria x ananassa HOM05D002083 ORTHO05D000332 1.5e-11 73.9 104 46.2
FvH4_2g21370 Fragaria vesca HOM05D002083 ORTHO05D000332 2.0e-11 73.6 104 47.1
FAN20G0033 Fragaria x ananassa HOM05D002083 ORTHO05D000332 2.0e-11 73.6 104 45.2
Hma1.2p1_0273F.1_g109640 Hydrangea macrophylla HOM05D002083 ORTHO05D000332 2.6e-11 73.2 92 42.4
Thecc.01G343300 Theobroma cacao HOM05D004310 ORTHO05D005403 2.6e-11 73.2 75 61.3
MD05G1196400 Malus domestica HOM05D002083 ORTHO05D000332 3.3e-11 72.8 85 50.6
CSS0009079 Camellia sinensis var. sinensis HOM05D002083 ORTHO05D000332 4.4e-11 72.4 89 44.9
Cfa003806 Carpinus fangiana HOM05D004310 ORTHO05D005403 4.4e-11 72.4 75 58.7
COL.COLO4_06292 Corchorus olitorius HOM05D004310 ORTHO05D005403 4.4e-11 72.4 75 60.0
FAN24G1600 Fragaria x ananassa HOM05D002083 ORTHO05D000332 4.4e-11 72.4 104 46.2
TPR.G4733 Trifolium pratense HOM05D004310 ORTHO05D005403 4.4e-11 72.4 71 62.0
QL04p061163 Quercus lobata HOM05D004310 ORTHO05D005403 5.7e-11 72.0 72 59.7
TWI59G1199 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 7.4e-11 71.6 76 56.6
Actinidia25794 Actinidia chinensis HOM05D002083 ORTHO05D000332 9.7e-11 71.2 90 46.7
Ca_09504_v3 Cicer arietinum L. HOM05D004310 ORTHO05D005403 9.7e-11 71.2 67 64.2
Gohir.D12G115400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 9.7e-11 71.2 75 61.3
SGA_v2.0_scaffold2G00878 Striga asiatica HOM05D002083 ORTHO05D000332 9.7e-11 71.2 83 49.4
CANSAT56G1285 Cannabis sativa HOM05D004310 ORTHO05D005403 1.3e-10 70.9 83 51.8
Gohir.A12G111933 Gossypium hirsutum HOM05D004310 ORTHO05D005403 1.7e-10 70.5 72 62.5
CsaV3_6G007120 Cucumis sativus L. HOM05D004310 ORTHO05D005403 2.2e-10 70.1 72 58.3
Migut.N02207 Erythranthe guttata HOM05D002083 ORTHO05D000332 2.2e-10 70.1 94 44.7
Glyma.19G255600 Glycine max HOM05D004310 ORTHO05D005403 2.2e-10 70.1 64 67.2
Gorai.004G152000 Gossypium raimondii HOM05D004310 ORTHO05D005403 2.2e-10 70.1 75 57.3
Gorai.008G124900 Gossypium raimondii HOM05D004310 ORTHO05D005403 2.2e-10 70.1 75 61.3
Potri.005G225000 Populus trichocarpa HOM05D002083 ORTHO05D000332 2.2e-10 70.1 88 50.0
Actinidia09545 Actinidia chinensis HOM05D002083 ORTHO05D000332 2.8e-10 69.7 95 44.2
MELO3C022416.2 Cucumis melo HOM05D004310 ORTHO05D005403 2.8e-10 69.7 72 58.3
Glyma.03G257300 Glycine max HOM05D004310 ORTHO05D005403 2.8e-10 69.7 105 51.4
Medtr7g117320 Medicago truncatula HOM05D004310 ORTHO05D005403 4.8e-10 68.9 71 54.9
Psat3g002680 Pisum sativum HOM05D004310 ORTHO05D005403 4.8e-10 68.9 76 53.9
Potri.014G098100 Populus trichocarpa HOM05D004310 ORTHO05D005403 4.8e-10 68.9 76 53.9
Gohir.A08G125500 Gossypium hirsutum HOM05D004310 ORTHO05D005403 8.2e-10 68.2 75 56.0
Duzib133G1258 Durio zibethinus HOM05D004310 ORTHO05D005403 1.1e-09 67.8 72 58.3
Phvul.006G112400 Phaseolus vulgaris HOM05D004310 ORTHO05D005403 1.1e-09 67.8 65 64.6
Atru.chr5.1702 Acer truncatum HOM05D002083 ORTHO05D000332 1.4e-09 67.4 80 45.0
Oeu025852.1 Olea europaea HOM05D002083 ORTHO05D000332 1.4e-09 67.4 97 42.3
Duzib138G1610 Durio zibethinus HOM05D002083 ORTHO05D000332 1.8e-09 67.0 91 46.2
Manes.13G034700 Manihot esculenta HOM05D002083 ORTHO05D000332 1.8e-09 67.0 92 43.5
Lj1A67G43 Lonicera japonica HOM05D002083 ORTHO05D000332 2.4e-09 66.6 98 38.8
Sabra05G0173600 Salix brachista HOM05D002083 ORTHO05D000332 2.4e-09 66.6 89 46.1
VMungo0540G1382 Vigna mungo HOM05D004310 ORTHO05D005403 2.4e-09 66.6 63 65.1
QL09p039042 Quercus lobata HOM05D002083 ORTHO05D000332 3.1e-09 66.2 160 34.4
MSTRG.21493 Avicennia marina HOM05D002083 ORTHO05D000332 4.1e-09 65.9 80 51.2
CANSAT01G0721 Cannabis sativa HOM05D002083 ORTHO05D000332 4.1e-09 65.9 82 46.3
Cpa.g.sc96.7 Carica papaya HOM05D004310 ORTHO05D005403 4.1e-09 65.9 77 53.2
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 5.3e-09 65.5 89 44.9
TAR362G0543 Trochodendron aralioides HOM05D002083 ORTHO05D000332 5.3e-09 65.5 94 41.5
Atru.chr5.660 Acer truncatum HOM05D004310 ORTHO05D005403 7.0e-09 65.1 71 54.9
Gohir.D08G146400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 7.0e-09 65.1 77 55.8
Peaxi162Scf01280g00018 Petunia axillaris HOM05D002083 ORTHO05D000332 7.0e-09 65.1 67 53.7
Potri.002G038000 Populus trichocarpa HOM05D002083 ORTHO05D000332 7.0e-09 65.1 89 42.7
Solyc09g025240.3 Solanum lycopersicum HOM05D002083 ORTHO05D000332 7.0e-09 65.1 67 52.2
Sopen09g028280 Solanum pennellii HOM05D002083 ORTHO05D000332 7.0e-09 65.1 67 52.2
TWI18G0238 Tripterygium wilfordii HOM05D002083 ORTHO05D000332 7.0e-09 65.1 87 43.7
AUR62024708 Chenopodium quinoa HOM05D002083 ORTHO05D000332 9.1e-09 64.7 97 37.1
PGR042G3601 Punica granatum HOM05D004310 ORTHO05D005403 9.1e-09 64.7 82 51.2
Nitab4.5_0005001g0010 Nicotiana tabacum HOM05D002083 ORTHO05D000332 1.2e-08 64.3 67 53.7
Sc17g0000630 Simmondsia chinensis HOM05D002083 ORTHO05D000332 1.2e-08 64.3 94 40.4
Ciclev10020037m.g Citrus clementina HOM05D004310 ORTHO05D005403 1.6e-08 63.9 71 52.1
Duzib138G0762 Durio zibethinus HOM05D004310 ORTHO05D005403 1.6e-08 63.9 75 54.7
Potri.002G170200 Populus trichocarpa HOM05D004310 ORTHO05D005403 1.6e-08 63.9 75 49.3
Sed0010710 Sechium edule HOM05D004310 ORTHO05D005403 1.6e-08 63.9 76 55.3
AUR62011865 Chenopodium quinoa HOM05D002083 ORTHO05D000332 2.0e-08 63.5 97 37.1
SalBow3G2754 Salvia bowleyana HOM05D004310 ORTHO05D005403 2.0e-08 63.5 73 47.9
PGSC0003DMG400010295 Solanum tuberosum HOM05D002083 ORTHO05D000332 2.0e-08 63.5 67 50.7
arahy.Tifrunner.gnm1.ann1.3ZMZ00 Arachis hypogaea HOM05D002083 ORTHO05D000332 2.6e-08 63.2 37 91.9
SalBow4G2007 Salvia bowleyana HOM05D002083 ORTHO05D000332 2.6e-08 63.2 94 44.7
Gohir.D07G155150 Gossypium hirsutum HOM05D002083 ORTHO05D000332 3.5e-08 62.8 95 41.1
Dinv22402 Davidia involucrata HOM05D002083 ORTHO05D000332 4.5e-08 62.4 101 42.6
Migut.N01550 Erythranthe guttata HOM05D004310 ORTHO05D005403 4.5e-08 62.4 76 44.7
RcHm_v2.0_Chr1g0359351 Rosa chinensis HOM05D004310 ORTHO05D005403 5.9e-08 62.0 134 35.1
Sabra14G0071900 Salix brachista HOM05D004310 ORTHO05D005403 5.9e-08 62.0 84 50.0
AUR62004485 Chenopodium quinoa HOM05D004310 ORTHO05D005403 7.7e-08 61.6 80 51.2
Cc01_g18280 Coffea canephora HOM05D002083 ORTHO05D000332 7.7e-08 61.6 97 38.1
Migut.O00903 Erythranthe guttata HOM05D004310 ORTHO05D005403 7.7e-08 61.6 75 45.3
Nitab4.5_0000470g0040 Nicotiana tabacum HOM05D002083 ORTHO05D000332 7.7e-08 61.6 67 52.2
Sc01g0002750 Simmondsia chinensis HOM05D004310 ORTHO05D005403 7.7e-08 61.6 85 47.1
CAN.G896.1 Capsicum annuum HOM05D002083 ORTHO05D000332 1.3e-07 60.8 67 52.2
Haze_15649 Corylus avellana HOM05D004310 ORTHO05D005403 1.3e-07 60.8 50 66.0
SGA_v2.0_scaffold43G16367 Striga asiatica HOM05D004310 ORTHO05D005403 1.3e-07 60.8 76 47.4
Gorai.001G177600 Gossypium raimondii HOM05D002083 ORTHO05D000332 1.7e-07 60.5 89 42.7
unitig_62.g23796 Utricularia gibba HOM05D004310 ORTHO05D005403 1.7e-07 60.5 77 39.0
Aa31LG1G10680 Aethionema arabicum HOM05D004310 ORTHO05D005403 2.2e-07 60.1 78 41.0
Dinv32582 Davidia involucrata HOM05D004310 ORTHO05D005403 2.2e-07 60.1 73 47.9
Actinidia20238 Actinidia chinensis HOM05D004310 ORTHO05D005403 2.9e-07 59.7 73 42.5
Ah.11g049780 Amaranthus hybridus HOM05D001790 ORTHO05D003691 2.9e-07 59.7 88 39.8
EL10As5g23473 Beta vulgaris HOM05D002083 ORTHO05D000332 2.9e-07 59.7 94 34.0
Thecc.01G257600 Theobroma cacao HOM05D002083 ORTHO05D000332 2.9e-07 59.7 91 40.7
MSTRG.20902 Avicennia marina HOM05D004310 ORTHO05D005403 3.8e-07 59.3 69 43.5
Duzib133G0919 Durio zibethinus HOM05D002083 ORTHO05D000332 3.8e-07 59.3 91 42.9
ECA236G2788 Erigeron canadensis HOM05D004310 ORTHO05D005403 3.8e-07 59.3 86 45.3
Actinidia10134 Actinidia chinensis HOM05D004310 ORTHO05D005403 5.0e-07 58.9 77 45.5
MSTRG.17338 Avicennia marina HOM05D004310 ORTHO05D005403 5.0e-07 58.9 72 45.8
HanXRQChr06g0170681 Helianthus annuus HOM05D004310 ORTHO05D005403 5.0e-07 58.9 77 48.1
Solyc01g095790.4 Solanum lycopersicum HOM05D004310 ORTHO05D005403 5.0e-07 58.9 77 46.8
Migut.D00428 Erythranthe guttata HOM05D002083 ORTHO05D000332 6.5e-07 58.5 85 43.5
Sabra02G0142100 Salix brachista HOM05D004310 ORTHO05D005403 6.5e-07 58.5 174 34.5
Sp6g01150 Schrenkiella parvula HOM05D004310 ORTHO05D005403 8.5e-07 58.2 76 46.1
THA.LOC104801375 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 8.5e-07 58.2 76 46.1
Dinv35111 Davidia involucrata HOM05D004310 ORTHO05D005403 1.1e-06 57.8 73 45.2
Oeu004945.1 Olea europaea HOM05D004310 ORTHO05D005403 1.1e-06 57.8 74 47.3
Sp1g00950 Schrenkiella parvula HOM05D004310 ORTHO05D005403 1.1e-06 57.8 75 46.7
PGSC0003DMG400000104 Solanum tuberosum HOM05D004310 ORTHO05D005403 1.1e-06 57.8 73 47.9
TAR375G0608 Trochodendron aralioides HOM05D004310 ORTHO05D005403 1.1e-06 57.8 72 48.6
Oeu008696.1 Olea europaea HOM05D004310 ORTHO05D005403 1.5e-06 57.4 72 43.1
Aa31LG5G960 Aethionema arabicum HOM05D004310 ORTHO05D005403 1.9e-06 57.0 75 45.3
EL10Ac1g00277 Beta vulgaris HOM05D004310 ORTHO05D005403 3.2e-06 56.2 73 47.9
Hund27201 Selenicereus undatus HOM05D004310 ORTHO05D005403 3.2e-06 56.2 77 48.1
Sopen01g039540 Solanum pennellii HOM05D004310 ORTHO05D005403 3.2e-06 56.2 73 46.6
THA.LOC104817053 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 3.2e-06 56.2 76 43.4
Gohir.D07G219500 Gossypium hirsutum HOM05D002083 ORTHO05D000332 4.2e-06 55.8 88 42.0
Gorai.001G253900 Gossypium raimondii HOM05D002083 ORTHO05D000332 4.2e-06 55.8 88 42.0
Rhsim07G0004600 Rhododendron simsii HOM05D004310 ORTHO05D005403 5.5e-06 55.5 82 42.7
AUR62023468 Chenopodium quinoa HOM05D004310 ORTHO05D005403 7.2e-06 55.1 77 46.8
Thhalv10028668m.g Eutrema salsugineum HOM05D004310 ORTHO05D005403 7.2e-06 55.1 75 44.0
Carub.0006s3602 Capsella rubella HOM05D004310 ORTHO05D005403 9.4e-06 54.7 75 42.7
Cpa.g.sc50.13 Carica papaya HOM05D002083 ORTHO05D000332 9.4e-06 54.7 83 36.1
Peaxi162Scf00786g00321 Petunia axillaris HOM05D004310 ORTHO05D005403 9.4e-06 54.7 76 44.7
TAR633G1296 Trochodendron aralioides HOM05D002083 ORTHO05D000332 9.4e-06 54.7 87 39.1


User provided reference genes

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