Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.5GG3L5 Arachis hypogaea HOM05D005490 ORTHO05D006606 5.5e-280 967.2 573 100.0
arahy.Tifrunner.gnm1.ann1.JF37M9 Arachis hypogaea HOM05D005490 ORTHO05D006606 8.8e-222 773.9 511 92.0
Phvul.002G018900 Phaseolus vulgaris HOM05D005490 ORTHO05D006606 4.0e-198 695.3 520 82.5
Glyma.01G186000 Glycine max HOM05D005490 ORTHO05D006606 2.0e-197 693.0 523 79.9
Lj2g0003149 Lotus japonicus HOM05D005490 ORTHO05D006606 4.1e-195 685.3 513 78.4
QL06p041379 Quercus lobata HOM05D005490 ORTHO05D006606 1.0e-193 680.6 520 76.9
VMungo1215G3252 Vigna mungo HOM05D005490 ORTHO05D006606 8.6e-193 677.6 511 79.5
Glyma.11G056000 Glycine max HOM05D005490 ORTHO05D006606 1.8e-190 669.8 516 81.0
Lalb_Chr05g0213291 Lupinus albus HOM05D005490 ORTHO05D006606 9.9e-189 664.1 515 76.1
Ca_24770_v3 Cicer arietinum L. HOM05D005490 ORTHO05D006606 1.7e-188 663.3 596 74.8
TPR.G30705 Trifolium pratense HOM05D005490 ORTHO05D006606 1.1e-187 660.6 513 79.1
Lj7A69T47 Lonicera japonica HOM05D005490 ORTHO05D006606 6.6e-185 651.4 528 73.3
Medtr5g017430 Medicago truncatula HOM05D005490 ORTHO05D006606 5.6e-184 648.3 510 78.4
Psat2g166360 Pisum sativum HOM05D005490 ORTHO05D006606 1.4e-182 643.7 520 74.2
Duzib187G0068 Durio zibethinus HOM05D005490 ORTHO05D006606 2.7e-178 629.4 521 73.9
TWI09G1398 Tripterygium wilfordii HOM05D005490 ORTHO05D006606 3.6e-175 619.0 515 72.8
Manes.12G106800 Manihot esculenta HOM05D005490 ORTHO05D006606 4.8e-175 618.6 517 72.5
CiPaw.01G018200 Carya illinoinensis HOM05D005490 ORTHO05D006606 3.1e-174 615.9 518 70.7
Potri.007G044100 Populus trichocarpa HOM05D005490 ORTHO05D006606 2.0e-173 613.2 517 71.2
Prupe.7G133300 Prunus persica HOM05D005490 ORTHO05D006606 1.7e-172 610.1 511 71.2
Thecc.01G056300 Theobroma cacao HOM05D005490 ORTHO05D006606 4.9e-172 608.6 516 72.9
Dinv29986 Davidia involucrata HOM05D005490 ORTHO05D006606 1.2e-170 604.0 523 69.6
Ciclev10025320m.g Citrus clementina HOM05D005490 ORTHO05D006606 2.1e-170 603.2 520 71.0
Cfa004023 Carpinus fangiana HOM05D005490 ORTHO05D006606 1.0e-169 600.9 515 72.8
Nitab4.5_0002016g0110 Nicotiana tabacum HOM05D005490 ORTHO05D006606 2.3e-169 599.7 555 66.7
Nn5g30300 Nelumbo nucifera HOM05D005490 ORTHO05D006606 1.9e-168 596.7 524 70.6
Gohir.D11G199100 Gossypium hirsutum HOM05D005490 ORTHO05D006606 4.3e-168 595.5 515 68.9
Gorai.007G213300 Gossypium raimondii HOM05D005490 ORTHO05D006606 1.3e-167 594.0 513 72.3
GSVIVG01022130001 Vitis vinifera HOM05D005490 ORTHO05D006606 1.6e-167 593.6 513 70.6
CANSAT01G1717 Cannabis sativa HOM05D005490 ORTHO05D006606 4.8e-167 592.0 480 72.3
Sed0007368 Sechium edule HOM05D005490 ORTHO05D006606 1.8e-166 590.1 519 71.5
CsaV3_2G016660 Cucumis sativus L. HOM05D005490 ORTHO05D006606 2.4e-166 589.7 479 74.1
RcHm_v2.0_Chr2g0105671 Rosa chinensis HOM05D005490 ORTHO05D006606 4.0e-166 589.0 509 68.8
COL.COLO4_11415 Corchorus olitorius HOM05D005490 ORTHO05D006606 5.3e-166 588.6 476 73.9
Gohir.A11G192400 Gossypium hirsutum HOM05D005490 ORTHO05D006606 6.9e-166 588.2 513 71.2
Cc07_g05990 Coffea canephora HOM05D005490 ORTHO05D006606 9.0e-166 587.8 514 70.6
PGSC0003DMG400004042 Solanum tuberosum HOM05D005490 ORTHO05D006606 1.1e-163 580.9 477 70.0
FAN28G1226 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.2e-163 579.3 589 63.8
Solyc02g090850.3 Solanum lycopersicum HOM05D005490 ORTHO05D006606 4.2e-163 578.9 477 69.8
Actinidia03792 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.2e-162 577.4 515 67.6
FAN19G0012 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.2e-162 577.4 525 68.0
Sc03g0001580 Simmondsia chinensis HOM05D005490 ORTHO05D006606 3.5e-162 575.9 514 70.0
Sabra07G0038800 Salix brachista HOM05D005490 ORTHO05D006606 1.0e-161 574.3 528 65.9
Hma1.2p1_0461F.1_g157810 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 2.3e-161 573.2 514 71.0
CAN.G660.7 Capsicum annuum HOM05D005490 ORTHO05D006606 8.7e-161 571.2 477 70.4
Aa31LG6G13990 Aethionema arabicum HOM05D005490 ORTHO05D006606 7.4e-160 568.2 514 66.5
DCAR_025733 Daucus carota HOM05D005490 ORTHO05D006606 1.8e-158 563.5 539 63.3
Oeu031525.2 Olea europaea HOM05D005490 ORTHO05D006606 5.3e-158 562.0 521 67.6
PSO210G6251 Papaver somniferum HOM05D005490 ORTHO05D006606 4.5e-157 558.9 476 70.2
Carub.0007s0317 Capsella rubella HOM05D005490 ORTHO05D006606 5.8e-157 558.5 512 67.0
PSO170G3823 Papaver somniferum HOM05D005490 ORTHO05D006606 5.8e-157 558.5 476 69.7
Sp7g34780 Schrenkiella parvula HOM05D005490 ORTHO05D006606 2.2e-156 556.6 522 67.0
AT4G36980 Arabidopsis thaliana HOM05D005490 ORTHO05D006606 3.2e-155 552.7 513 69.0
Gohir.A02G157300 Gossypium hirsutum HOM05D005490 ORTHO05D006606 9.3e-155 551.2 518 69.9
Lsat_1_v5_gn_2_84101 Lactuca sativa HOM05D005490 ORTHO05D006606 9.3e-155 551.2 583 61.4
Thhalv10025018m.g Eutrema salsugineum HOM05D005490 ORTHO05D006606 1.6e-154 550.4 518 67.8
BraA01t00174Z Brassica rapa HOM05D005490 ORTHO05D006606 2.1e-154 550.1 570 62.3
Gorai.003G025100 Gossypium raimondii HOM05D005490 ORTHO05D006606 4.6e-154 548.9 513 72.9
ClCG02G012530 Citrullus lanatus HOM05D005490 ORTHO05D006606 1.0e-153 547.7 521 66.6
Hund16323 Selenicereus undatus HOM05D005490 ORTHO05D006606 2.3e-153 546.6 576 64.6
Potri.005G138200 Populus trichocarpa HOM05D005490 ORTHO05D006606 3.0e-153 546.2 396 77.3
AL7G13750 Arabidopsis lyrata HOM05D005490 ORTHO05D006606 3.9e-153 545.8 512 67.4
ECA238G0711 Erigeron canadensis HOM05D005490 ORTHO05D006606 8.7e-153 544.7 512 71.1
THA.LOC104804216 Tarenaya hassleriana HOM05D005490 ORTHO05D006606 2.5e-152 543.1 517 65.4
A01p01850 Brassica napus HOM05D005490 ORTHO05D006606 3.3e-152 542.7 514 65.2
MD02G1172000 Malus domestica HOM05D005490 ORTHO05D006606 5.7e-152 542.0 383 77.5
Migut.H00433 Erythranthe guttata HOM05D005490 ORTHO05D006606 7.4e-152 541.6 523 66.9
CSS0049924 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 3.7e-151 539.3 577 62.2
EL10Ac6g15745 Beta vulgaris HOM05D005490 ORTHO05D006606 1.4e-150 537.3 536 65.7
HanXRQChr14g0442791 Helianthus annuus HOM05D005490 ORTHO05D006606 1.4e-150 537.3 514 65.0
C01p01990 Brassica napus HOM05D005490 ORTHO05D006606 5.3e-150 535.4 519 63.2
Oeu062437.1 Olea europaea HOM05D005490 ORTHO05D006606 1.3e-148 530.8 516 63.6
Gohir.D03G023600 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.7e-148 530.4 478 70.7
AUR62001928 Chenopodium quinoa HOM05D005490 ORTHO05D006606 2.2e-148 530.0 514 63.4
BcaNung02520 Brassica carinata HOM05D005490 ORTHO05D006606 1.9e-147 526.9 477 66.9
Aqoxy5G01229 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 2.5e-147 526.6 417 72.2
BolC1t00193H Brassica oleracea HOM05D005490 ORTHO05D006606 2.5e-147 526.6 587 58.9
TAR381G1106 Trochodendron aralioides HOM05D005490 ORTHO05D006606 2.5e-147 526.6 397 75.8
SGA_v2.0_scaffold15G07303 Striga asiatica HOM05D005490 ORTHO05D006606 4.2e-147 525.8 478 67.8
CARHR245520 Cardamine hirsuta HOM05D005490 ORTHO05D006606 1.9e-144 516.9 513 63.0
FAN26G0668 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.3e-144 516.2 404 74.3
Os03g0395900 Oryza sativa ssp. japonica HOM05D005490 ORTHO05D006606 1.6e-138 497.3 478 63.6
CDE08G0045 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 8.8e-137 491.5 530 57.4
FAN23G2111 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.1e-134 483.0 407 71.5
HPP92_004114 Vanilla planifolia HOM05D005490 ORTHO05D006606 1.6e-130 470.7 515 57.9
AUR62003882 Chenopodium quinoa HOM05D005490 ORTHO05D006606 3.6e-130 469.5 474 62.0
CDE06G1923 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.0e-129 468.0 478 60.7
ATR1102G026 Amborella trichopoda HOM05D005490 ORTHO05D006606 2.6e-128 463.4 517 59.2
Peaxi162Scf00450g00420 Petunia axillaris HOM05D005490 ORTHO05D006606 5.7e-128 462.2 520 55.4
Sabra05G0112300 Salix brachista HOM05D005490 ORTHO05D006606 5.2e-113 412.5 586 50.2
Ah.03g145080 Amaranthus hybridus HOM05D005490 ORTHO05D006606 4.5e-109 399.4 410 65.1
unitig_899.g14662 Utricularia gibba HOM05D005490 ORTHO05D006606 1.0e-108 398.3 388 67.3
Rhsim08G0100400 Rhododendron simsii HOM05D005490 ORTHO05D006606 9.8e-104 381.7 456 57.9
Nitab4.5_0002440g0010 Nicotiana tabacum HOM05D005490 ORTHO05D006606 4.1e-102 376.3 523 47.0
vmacro17955 Vaccinium macrocarpon HOM05D005490 ORTHO05D006606 5.4e-102 375.9 375 66.7
Mapoly0012s0107 Marchantia polymorpha HOM05D005490 ORTHO05D006606 1.2e-101 374.8 495 50.5
MD15G1284300 Malus domestica HOM05D005490 ORTHO05D006606 1.5e-96 357.8 349 65.0
Hma1.2p1_0461F.1_g157800 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 6.4e-95 352.4 381 63.3
MELO3C020875.2 Cucumis melo HOM05D005490 ORTHO05D006606 2.4e-94 350.5 338 70.1
FvH4_1g16060 Fragaria vesca HOM05D005490 ORTHO05D006606 7.8e-93 345.5 372 63.2
Atru.chr3.327 Acer truncatum HOM05D005490 ORTHO05D006606 3.0e-92 343.6 337 66.8
Eucgr.I00926 Eucalyptus grandis HOM05D005490 ORTHO05D006606 8.6e-92 342.0 374 62.6
Pp3c7_5520 Physcomitrium patens HOM05D005490 ORTHO05D006606 2.0e-88 330.9 553 50.1
Dinv39848 Davidia involucrata HOM05D005490 ORTHO05D006606 1.4e-86 324.7 305 64.3
Sopen02g035470 Solanum pennellii HOM05D005490 ORTHO05D006606 2.4e-86 323.9 264 71.2
Pp3c11_20900 Physcomitrium patens HOM05D005490 ORTHO05D006606 2.7e-77 293.9 493 44.8
HPP92_004074 Vanilla planifolia HOM05D005490 ORTHO05D006606 2.9e-71 273.9 352 55.1
Haze_15401 Corylus avellana HOM05D005490 ORTHO05D006606 2.4e-65 254.2 347 55.6
Haze_15403 Corylus avellana HOM05D005490 ORTHO05D006606 5.8e-64 249.6 347 55.0
SEGI_41077 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 3.2e-62 243.8 371 58.0
SMO356G0652 Selaginella moellendorffii HOM05D005490 ORTHO05D006606 3.9e-60 236.9 247 56.3
Actinidia16483 Actinidia chinensis HOM05D005490 ORTHO05D006606 2.5e-59 234.2 403 50.9
SEGI_00791 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 1.3e-58 231.9 154 76.6
Atru.chr3.328 Acer truncatum HOM05D005490 ORTHO05D006606 5.3e-57 226.5 128 89.1
Zm00001eb019290 Zea mays HOM05D005490 ORTHO05D006606 3.4e-56 223.8 305 53.1
Cpa.g.sc55.148 Carica papaya HOM05D005490 ORTHO05D006606 7.6e-56 222.6 128 88.3
MD15G1284200 Malus domestica HOM05D005490 ORTHO05D006606 1.6e-53 214.9 126 85.7
Actinidia36493 Actinidia chinensis HOM05D005490 ORTHO05D006606 3.0e-52 210.7 351 47.9
CBR_g38045 Chara braunii HOM05D005490 ORTHO05D000004 8.4e-39 166.0 521 39.0
Actinidia16484 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.2e-37 162.2 84 91.7
VMungo1309G0325 Vigna mungo HOM05D005490 ORTHO05D006606 5.1e-36 156.8 160 56.9
VMungo0720G1861 Vigna mungo HOM05D005490 ORTHO05D006606 1.0e-31 142.5 143 56.6
AagrBONN_evm.TU.Sc2ySwM_344.4468 Anthoceros agrestis HOM05D005490 ORTHO05D006606 2.9e-31 141.0 497 31.2
SHI08459 Sapria himalayana HOM05D005490 ORTHO05D006606 2.2e-23 114.8 282 34.4
CSS0031445 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 1.2e-21 109.0 113 59.3
FAN22G1581 Fragaria x ananassa HOM05D005490 ORTHO05D006606 4.7e-21 107.1 72 72.2
FAN17G2271 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.5e-19 102.1 66 75.8
VMungo1309G1585 Vigna mungo HOM05D005490 ORTHO05D006606 6.3e-18 96.7 88 61.4
MD02G1172100 Malus domestica HOM05D005490 ORTHO05D006606 4.1e-17 94.0 108 59.3
VMungo0251G2361 Vigna mungo HOM05D007793 ORTHO05D010104 9.1e-17 92.8 87 57.5
FAN17G1267 Fragaria x ananassa HOM05D005490 ORTHO05D006606 4.5e-16 90.5 64 73.4
Aqoxy5G01228 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 2.5e-14 84.7 116 48.3
Actinidia36494 Actinidia chinensis HOM05D005490 ORTHO05D006606 8.0e-13 79.7 72 68.1
Atru.chr10.1611 Acer truncatum HOM05D005490 ORTHO05D006606 4.4e-11 73.9 50 72.0
CDE08G1038 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 2.8e-10 71.2 411 26.0
Cre12.g498350 Chlamydomonas reinhardtii HOM05D005490 ORTHO05D006606 3.1e-09 67.8 192 31.2
ECA233G0248 Erigeron canadensis HOM05D000047 ORTHO05D006606 1.9e-06 58.5 117 59.8
TAR381G1012 Trochodendron aralioides HOM05D005490 ORTHO05D006606 1.9e-06 58.5 79 53.2


User provided reference genes

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