Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 1.0e-63 246.5 118 100.0
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 9.5e-62 240.0 118 97.5
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 1.3e-55 219.5 105 99.0
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 6.8e-52 207.2 106 89.6
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 1.5e-51 206.1 106 89.6
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 5.8e-51 204.1 106 86.8
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 7.5e-51 203.8 106 88.7
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 1.3e-50 203.0 108 86.1
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 1.7e-50 202.6 106 87.7
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 2.2e-50 202.2 106 88.7
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 2.9e-50 201.8 104 87.5
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 3.7e-50 201.4 105 86.7
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 4.9e-50 201.1 105 86.7
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 6.4e-50 200.7 110 81.8
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 8.3e-50 200.3 106 86.8
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 1.1e-49 199.9 108 82.4
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 1.4e-49 199.5 106 84.9
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 3.2e-49 198.4 109 85.3
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 4.1e-49 198.0 104 87.5
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 5.4e-49 197.6 106 84.9
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.2e-48 196.4 107 86.0
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.2e-48 196.4 107 86.0
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 1.2e-48 196.4 105 85.7
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 2.0e-48 195.7 106 86.8
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 2.7e-48 195.3 106 84.0
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 4.6e-48 194.5 108 81.5
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 4.6e-48 194.5 106 83.0
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 4.6e-48 194.5 106 84.0
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 4.6e-48 194.5 106 83.0
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 6.0e-48 194.1 106 83.0
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 6.0e-48 194.1 109 80.7
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 6.0e-48 194.1 106 83.0
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 1.0e-47 193.4 106 83.0
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 1.7e-47 192.6 103 82.5
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 1.7e-47 192.6 106 84.9
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 1.7e-47 192.6 106 84.0
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 1.7e-47 192.6 106 84.0
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 1.7e-47 192.6 104 84.6
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 2.3e-47 192.2 106 85.8
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 2.3e-47 192.2 106 82.1
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 2.3e-47 192.2 106 83.0
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 2.3e-47 192.2 106 81.1
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 3.0e-47 191.8 106 82.1
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 3.9e-47 191.4 106 82.1
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 5.0e-47 191.0 106 82.1
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 6.6e-47 190.7 106 80.2
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 6.6e-47 190.7 106 81.1
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 6.6e-47 190.7 106 81.1
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 6.6e-47 190.7 106 81.1
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 6.6e-47 190.7 106 81.1
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 6.6e-47 190.7 106 81.1
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 8.6e-47 190.3 106 81.1
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 8.6e-47 190.3 106 81.1
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 8.6e-47 190.3 106 81.1
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 1.5e-46 189.5 106 83.0
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 1.5e-46 189.5 106 81.1
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 1.5e-46 189.5 106 80.2
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 1.9e-46 189.1 112 78.6
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 2.5e-46 188.7 106 82.1
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 4.3e-46 188.0 106 80.2
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 5.6e-46 187.6 106 81.1
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 7.3e-46 187.2 104 81.7
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 7.3e-46 187.2 104 81.7
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 1.2e-45 186.4 106 80.2
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 1.2e-45 186.4 106 80.2
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 2.1e-45 185.7 106 79.2
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 2.1e-45 185.7 106 81.1
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 2.8e-45 185.3 106 76.4
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 3.6e-45 184.9 106 81.1
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 4.7e-45 184.5 104 78.8
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 4.7e-45 184.5 106 79.2
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 6.2e-45 184.1 106 79.2
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 8.1e-45 183.7 105 77.1
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 8.1e-45 183.7 105 77.1
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 8.1e-45 183.7 104 78.8
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 8.1e-45 183.7 106 78.3
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 1.1e-44 183.3 106 77.4
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 1.4e-44 183.0 107 77.6
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.8e-44 182.6 106 77.4
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 2.3e-44 182.2 109 73.4
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 4.0e-44 181.4 106 78.3
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 4.0e-44 181.4 106 78.3
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 5.2e-44 181.0 104 78.8
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 6.8e-44 180.6 104 76.9
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 8.9e-44 180.3 106 73.6
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 1.5e-43 179.5 107 73.8
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 1.5e-43 179.5 106 74.5
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 2.0e-43 179.1 104 76.9
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 2.6e-43 178.7 104 78.8
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 2.6e-43 178.7 114 73.7
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 3.4e-43 178.3 106 73.6
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 4.4e-43 177.9 106 73.6
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 4.4e-43 177.9 106 77.4
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 5.8e-43 177.6 106 76.4
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 9.8e-43 176.8 106 71.7
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 1.3e-42 176.4 106 73.6
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 1.7e-42 176.0 107 75.7
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 1.7e-42 176.0 104 76.9
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 2.2e-42 175.6 106 73.6
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 2.2e-42 175.6 104 75.0
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 2.9e-42 175.3 104 77.9
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 3.7e-42 174.9 105 75.2
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 3.7e-42 174.9 104 76.0
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 6.4e-42 174.1 104 73.1
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 1.1e-41 173.3 105 72.4
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 1.9e-41 172.6 109 71.6
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 1.9e-41 172.6 104 77.9
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 1.9e-41 172.6 104 77.9
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 4.1e-41 171.4 104 76.9
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 7.1e-41 170.6 106 74.5
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 2.7e-40 168.7 106 71.7
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 4.6e-40 167.9 106 70.8
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 1.0e-39 166.8 109 69.7
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 1.0e-39 166.8 109 69.7
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 1.0e-39 166.8 109 69.7
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 1.7e-39 166.0 78 98.7
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 1.7e-39 166.0 88 83.0
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 3.0e-39 165.2 106 70.8
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 1.9e-38 162.5 105 72.4
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 4.7e-37 157.9 114 64.9
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 8.9e-36 153.7 100 72.0
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 6.4e-34 147.5 107 66.4
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 1.4e-33 146.4 103 69.9
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 8.6e-31 137.1 69 85.5
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 7.3e-30 134.0 95 65.3
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 3.5e-24 115.2 103 53.4
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 3.5e-24 115.2 97 52.6
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 3.5e-24 115.2 66 75.8
MBI16_g23757_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 3.0e-23 112.1 68 76.5
MBI16_g23756_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D016475 3.3e-22 108.6 69 72.5
Nn4g24251 Nelumbo nucifera HOM05D005599 ORTHO05D006921 1.2e-19 100.1 57 80.7
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 2.0e-19 99.4 106 46.2
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 6.0e-16 87.8 65 61.5
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 1.5e-14 83.2 53 64.2
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 1.8e-12 76.3 49 61.2
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 1.7e-10 69.7 43 72.1
FAN02G4440 Fragaria x ananassa HOM05D012050 ORTHO05D011158 2.5e-06 55.8 31 74.2


User provided reference genes

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