Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.5FY99X Arachis hypogaea HOM05D005189 ORTHO05D006093 1.0e-212 743.0 356 100.0
arahy.Tifrunner.gnm1.ann1.ALS4S9 Arachis hypogaea HOM05D005189 ORTHO05D006093 4.1e-193 677.9 365 91.0
arahy.Tifrunner.gnm1.ann1.4RF6J7 Arachis hypogaea HOM05D005189 ORTHO05D006093 3.1e-180 635.2 403 79.4
arahy.Tifrunner.gnm1.ann1.ZR0QLK Arachis hypogaea HOM05D005189 ORTHO05D006093 1.2e-171 606.7 389 78.7
arahy.Tifrunner.gnm1.ann1.3WZ8U6 Arachis hypogaea HOM05D005189 ORTHO05D006093 2.7e-168 595.5 420 73.1
arahy.Tifrunner.gnm1.ann1.U1QXXC Arachis hypogaea HOM05D005189 ORTHO05D006093 6.0e-168 594.3 419 72.8
Glyma.09G081700 Glycine max HOM05D005189 ORTHO05D006093 4.2e-145 518.5 403 66.0
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 7.3e-142 507.7 404 63.6
Lalb_Chr01g0008881 Lupinus albus HOM05D005189 ORTHO05D006093 1.5e-139 500.0 409 61.9
Lj6g0027180 Lotus japonicus HOM05D005189 ORTHO05D006093 4.6e-136 488.4 412 61.7
Phvul.011G074000 Phaseolus vulgaris HOM05D005189 ORTHO05D006093 4.6e-136 488.4 363 63.9
TPR.G23365 Trifolium pratense HOM05D005189 ORTHO05D006093 6.7e-135 484.6 407 59.2
Medtr7g105630 Medicago truncatula HOM05D005189 ORTHO05D006093 2.4e-132 476.1 412 60.9
Psat3g030640 Pisum sativum HOM05D005189 ORTHO05D006093 5.3e-132 474.9 404 59.2
Ca_09036_v3 Cicer arietinum L. HOM05D006431 ORTHO05D007918 1.2e-131 473.8 399 58.9
Lj1g0024820 Lotus japonicus HOM05D005189 ORTHO05D006093 1.2e-131 473.8 404 61.4
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 3.5e-128 462.2 411 59.6
Cfa010639 Carpinus fangiana HOM05D005189 ORTHO05D006093 1.8e-127 459.9 356 62.1
Glyma.12G070400 Glycine max HOM05D005189 ORTHO05D006093 2.6e-123 446.0 368 62.0
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 5.8e-123 444.9 417 57.8
Potri.002G201200 Populus trichocarpa HOM05D005189 ORTHO05D006093 2.1e-120 436.4 411 57.2
TWI23G0603 Tripterygium wilfordii HOM05D005189 ORTHO05D006093 1.5e-118 430.3 366 58.2
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 4.3e-118 428.7 410 54.6
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 9.7e-118 427.6 381 57.7
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 9.7e-118 427.6 367 58.9
Ciclev10020359m.g Citrus clementina HOM05D005189 ORTHO05D006093 2.2e-117 426.4 412 55.1
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 3.7e-117 425.6 364 57.7
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 1.1e-116 424.1 358 59.2
GSVIVG01028059001 Vitis vinifera HOM05D005189 ORTHO05D006093 3.1e-116 422.5 412 52.9
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 4.1e-116 422.2 364 57.4
Sabra02G0157700 Salix brachista HOM05D005189 ORTHO05D006093 9.0e-116 421.0 418 52.2
PGR044G0984 Punica granatum HOM05D005189 ORTHO05D006093 1.5e-115 420.2 373 55.0
PGR047G0002 Punica granatum HOM05D005189 ORTHO05D006093 1.5e-115 420.2 373 55.0
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 3.4e-115 419.1 366 56.3
Duzib128G0399 Durio zibethinus HOM05D005189 ORTHO05D006093 4.5e-115 418.7 412 54.4
CiPaw.01G112900 Carya illinoinensis HOM05D005189 ORTHO05D006093 6.5e-114 414.8 346 60.4
Solyc08g076440.4 Solanum lycopersicum HOM05D005189 ORTHO05D006093 1.9e-113 413.3 346 58.1
Eucgr.D00103 Eucalyptus grandis HOM05D005189 ORTHO05D006093 2.5e-113 412.9 435 50.1
Cpa.g.sc151.36 Carica papaya HOM05D005189 ORTHO05D006093 3.2e-113 412.5 417 55.4
Gohir.A11G162200 Gossypium hirsutum HOM05D005189 ORTHO05D006093 7.2e-113 411.4 415 53.5
Gohir.D11G168500 Gossypium hirsutum HOM05D005189 ORTHO05D006093 9.4e-113 411.0 413 53.5
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 2.1e-112 409.8 367 56.1
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 3.6e-112 409.1 408 52.0
Gorai.007G180000 Gossypium raimondii HOM05D005189 ORTHO05D006093 3.6e-112 409.1 413 53.0
Oeu008336.1 Olea europaea HOM05D005189 ORTHO05D006093 3.6e-112 409.1 413 52.8
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 1.0e-111 407.5 410 54.1
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 6.7e-111 404.8 364 55.5
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 6.7e-111 404.8 419 50.4
EL10Ac2g03409 Beta vulgaris HOM05D005189 ORTHO05D006093 2.5e-110 402.9 395 51.6
Thecc.05G192400 Theobroma cacao HOM05D005189 ORTHO05D006093 3.3e-110 402.5 414 52.9
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 1.3e-109 400.6 362 53.6
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 1.3e-109 400.6 352 57.1
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 2.8e-109 399.4 363 53.4
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 2.8e-109 399.4 364 54.4
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 3.7e-109 399.1 387 53.2
PGSC0003DMG400014794 Solanum tuberosum HOM05D005189 ORTHO05D006093 6.3e-109 398.3 364 52.5
THA.LOC104801289 Tarenaya hassleriana HOM05D005189 ORTHO05D006093 6.3e-109 398.3 364 53.6
Nitab4.5_0000809g0080 Nicotiana tabacum HOM05D005189 ORTHO05D006093 1.1e-108 397.5 364 53.0
CDE02G1252 Ceratophyllum demersum HOM05D005189 ORTHO05D006093 1.4e-108 397.1 353 53.8
CAN.G1987.2 Capsicum annuum HOM05D005189 ORTHO05D006093 1.8e-108 396.7 377 53.1
Sopen08g025020 Solanum pennellii HOM05D005189 ORTHO05D006093 1.8e-108 396.7 393 51.9
ECA236G2822 Erigeron canadensis HOM05D000141 ORTHO05D000780 4.1e-108 395.6 345 55.4
Cc01_g21150 Coffea canephora HOM05D005189 ORTHO05D006093 5.3e-108 395.2 364 52.5
MSTRG.13027 Avicennia marina HOM05D005189 ORTHO05D006093 9.1e-108 394.4 401 52.6
MD10G1211200 Malus domestica HOM05D005189 ORTHO05D006093 2.6e-107 392.9 360 54.7
Prupe.4G131100 Prunus persica HOM05D005189 ORTHO05D006093 3.8e-106 389.0 360 54.2
AUR62024701 Chenopodium quinoa HOM05D005189 ORTHO05D006093 5.0e-106 388.7 357 54.9
MD05G1235200 Malus domestica HOM05D005189 ORTHO05D006093 5.0e-106 388.7 360 55.0
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 6.5e-106 388.3 386 51.0
FAN16G0469 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.1e-105 387.5 361 53.7
FvH4_3g14570 Fragaria vesca HOM05D005189 ORTHO05D006093 1.9e-105 386.7 362 53.3
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 2.5e-105 386.3 365 53.4
RcHm_v2.0_Chr5g0024021 Rosa chinensis HOM05D005189 ORTHO05D006093 3.2e-105 386.0 415 50.8
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 5.5e-105 385.2 383 50.9
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 7.2e-105 384.8 364 51.1
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 9.4e-105 384.4 363 53.4
AUR62011856 Chenopodium quinoa HOM05D005189 ORTHO05D006093 1.6e-104 383.6 363 53.4
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 3.6e-104 382.5 391 50.9
Nn8g40249 Nelumbo nucifera HOM05D005189 ORTHO05D006093 3.6e-104 382.5 335 56.1
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 3.6e-104 382.5 398 49.5
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 4.7e-104 382.1 357 51.3
BcaC04g24048 Brassica carinata HOM05D005189 ORTHO05D006093 4.7e-104 382.1 396 49.0
HPP92_013737 Vanilla planifolia HOM05D005189 ORTHO05D006093 6.1e-104 381.7 363 53.2
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 1.8e-103 380.2 397 48.9
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 2.3e-103 379.8 361 52.6
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 5.1e-103 378.6 364 54.9
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 6.7e-103 378.3 364 54.7
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 1.1e-102 377.5 363 53.4
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 3.7e-101 372.5 352 52.8
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 8.2e-101 371.3 362 49.7
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 1.4e-100 370.5 356 52.0
Zm00001eb013970 Zea mays HOM05D005189 ORTHO05D006093 5.3e-100 368.6 357 49.0
Zm00001eb396540 Zea mays HOM05D005189 ORTHO05D006093 7.0e-100 368.2 361 49.3
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 1.2e-99 367.5 325 54.5
Peaxi162Scf00170g00624 Petunia axillaris HOM05D005189 ORTHO05D006093 2.0e-99 366.7 336 52.7
Nitab4.5_0000529g0190 Nicotiana tabacum HOM05D005189 ORTHO05D006093 1.7e-98 363.6 397 47.9
Lsat_1_v5_gn_8_164980 Lactuca sativa HOM05D005189 ORTHO05D006093 7.2e-97 358.2 339 51.9
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 2.7e-96 356.3 354 50.8
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 1.8e-92 343.6 345 49.9
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 1.3e-90 337.4 406 48.3
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 2.5e-89 333.2 367 48.0
EL10Ac9g21129 Beta vulgaris HOM05D005189 ORTHO05D006093 5.7e-86 322.0 360 45.6
A09p01690 Brassica napus HOM05D005189 ORTHO05D006093 2.4e-84 316.6 315 49.8
C09p01760 Brassica napus HOM05D005189 ORTHO05D006093 9.1e-84 314.7 315 48.9
FAN11G2688 Fragaria x ananassa HOM05D005189 ORTHO05D006093 6.1e-80 302.0 446 42.4
Oeu021746.1 Olea europaea HOM05D005189 ORTHO05D006093 3.0e-79 299.7 321 49.5
Mapoly0037s0138 Marchantia polymorpha HOM05D005189 ORTHO05D006093 5.2e-79 298.9 379 42.2
BolC9t53111H Brassica oleracea HOM05D005189 ORTHO05D006093 9.2e-76 288.1 179 71.5
BraA09t35824Z Brassica rapa HOM05D005189 ORTHO05D006093 2.7e-75 286.6 179 70.9
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 7.7e-75 285.0 382 45.3
DCAR_022674 Daucus carota HOM05D005189 ORTHO05D006093 1.6e-72 277.3 356 45.5
SMO118G0558 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 2.1e-72 276.9 337 43.6
SEGI_10631 Sequoiadendron giganteum HOM05D005189 ORTHO05D006093 1.8e-71 273.9 376 41.5
Pp3c25_650 Physcomitrium patens HOM05D005189 ORTHO05D006093 6.8e-71 271.9 378 39.9
CAN.G726.22 Capsicum annuum HOM05D005189 ORTHO05D006093 1.2e-70 271.2 248 52.4
Actinidia21022 Actinidia chinensis HOM05D005189 ORTHO05D006093 4.4e-70 269.2 267 50.6
TPR.G32201 Trifolium pratense HOM05D005189 ORTHO05D006093 5.7e-70 268.9 244 55.7
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 4.9e-69 265.8 407 36.6
FAN25G2462 Fragaria x ananassa HOM05D005189 ORTHO05D006093 6.4e-69 265.4 199 63.3
DCAR_008439 Daucus carota HOM05D005189 ORTHO05D006093 2.0e-67 260.4 450 37.8
Haze_03588 Corylus avellana HOM05D005189 ORTHO05D006093 1.3e-61 241.1 132 81.8
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 6.4e-61 238.8 331 41.7
AagrBONN_evm.TU.Sc2ySwM_117.3848 Anthoceros agrestis HOM05D005189 ORTHO05D006093 1.2e-56 224.6 191 52.9
Lj1A21G66 Lonicera japonica HOM05D005189 ORTHO05D006093 3.7e-53 213.0 129 76.7
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 3.4e-46 189.9 416 31.0
TPR.G32202 Trifolium pratense HOM05D005189 ORTHO05D006093 4.9e-37 159.5 90 78.9
Zm00001eb265340 Zea mays HOM05D005189 ORTHO05D006093 9.3e-36 155.2 103 64.1
HanXRQChr04g0111201 Helianthus annuus HOM05D005189 ORTHO05D006093 4.8e-32 142.9 89 69.7
Haze_03587 Corylus avellana HOM05D005189 ORTHO05D006093 6.2e-32 142.5 85 70.6
COL.COLO4_33288 Corchorus olitorius HOM05D005189 ORTHO05D006093 1.5e-30 137.9 91 63.7
Haze_03584 Corylus avellana HOM05D002736 ORTHO05D003882 2.2e-29 134.0 79 72.2
Zm00001eb312720 Zea mays HOM05D005189 ORTHO05D006093 2.9e-29 133.7 83 66.3
Aqoxy22s002 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 6.4e-29 132.5 78 70.5
MCO15G205 Micromonas commoda HOM05D005189 ORTHO05D006093 3.5e-27 126.7 335 31.0
Lj1A21T72 Lonicera japonica HOM05D005189 ORTHO05D006093 1.0e-26 125.2 77 72.7
Zm00001eb306860 Zea mays HOM05D001670 ORTHO05D006093 2.1e-24 117.5 177 35.6
Os01g0578200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 2.8e-24 117.1 86 55.8
Thecc.05G196300 Theobroma cacao HOM05D005189 ORTHO05D006093 4.8e-24 116.3 81 63.0
Cre03.g149500 Chlamydomonas reinhardtii HOM05D005189 ORTHO05D006093 2.4e-23 114.0 423 25.1
PRCOL_00005294 Prasinoderma coloniale HOM05D005189 ORTHO05D006093 1.3e-21 108.2 338 27.8
SMO143G0306 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 1.5e-17 94.7 79 51.9
SMO143G0318 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 1.8e-15 87.8 90 50.0
Prupe.1G192100 Prunus persica HOM05D005189 ORTHO05D006093 6.9e-15 85.9 54 74.1
TAR633G0010 Trochodendron aralioides HOM05D000322 ORTHO05D000186 6.9e-15 85.9 53 71.7
Zm00001eb129840 Zea mays HOM05D001670 ORTHO05D006093 5.8e-14 82.8 54 61.1
Zm00001eb068830 Zea mays HOM05D005189 ORTHO05D006093 9.3e-12 75.5 42 66.7
Aqoxy22s003 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 1.9e-09 67.8 39 71.8
arahy.Tifrunner.gnm1.ann1.V7ULXX Arachis hypogaea HOM05D005189 ORTHO05D006093 7.4e-09 65.9 32 81.2
HanXRQChr14g0445741 Helianthus annuus HOM05D006130 ORTHO05D007491 1.3e-08 65.1 321 23.7
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 2.1e-08 64.3 340 21.5
ECA238G3253 Erigeron canadensis HOM05D006130 ORTHO05D007491 2.1e-08 64.3 313 23.0
Zm00001eb092500 Zea mays HOM05D005189 ORTHO05D006093 2.1e-08 64.3 40 62.5
Prupe.6G171600 Prunus persica HOM05D006130 ORTHO05D007491 4.8e-08 63.2 335 22.1
Potri.006G270600 Populus trichocarpa HOM05D000344 ORTHO05D000934 1.1e-07 62.0 156 28.2
Cpa.g.sc191.11 Carica papaya HOM05D006130 ORTHO05D007491 3.1e-07 60.5 332 20.8
EL10Ac9g21113 Beta vulgaris HOM05D005189 ORTHO05D006093 5.3e-07 59.7 51 47.1
QL06p031976 Quercus lobata HOM05D006130 ORTHO05D007491 2.0e-06 57.8 349 23.2
Eucgr.C04018 Eucalyptus grandis HOM05D000344 ORTHO05D000934 3.4e-06 57.0 115 27.0
Glyma.11G155468 Glycine max HOM05D005189 ORTHO05D006093 3.4e-06 57.0 29 82.8
Potri.018G009500 Populus trichocarpa HOM05D000344 ORTHO05D000934 3.4e-06 57.0 195 26.7
Lalb_Chr14g0375421 Lupinus albus HOM05D000344 ORTHO05D000934 7.6e-06 55.8 120 28.3


User provided reference genes

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