Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 4.8e-260 900.6 435 100.0
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 8.7e-137 491.1 426 59.4
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 3.7e-135 485.7 390 63.3
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 4.8e-135 485.3 392 62.8
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 2.0e-133 479.9 426 58.2
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 4.9e-132 475.3 394 60.4
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 1.9e-131 473.4 414 58.9
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 4.2e-131 472.2 392 61.2
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 4.2e-131 472.2 392 61.2
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 1.1e-128 464.2 410 59.0
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 2.8e-127 459.5 395 59.5
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 1.5e-88 330.9 414 43.7
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 7.0e-86 322.0 400 46.0
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 1.8e-81 307.4 429 40.8
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 4.4e-80 302.8 417 40.8
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 9.8e-80 301.6 389 40.9
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 1.3e-79 301.2 431 40.4
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.7e-79 300.8 390 40.5
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 3.7e-79 299.7 390 43.1
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 3.7e-79 299.7 390 41.3
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 8.3e-79 298.5 389 40.9
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 1.8e-78 297.4 406 41.6
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 2.4e-78 297.0 389 39.8
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.4e-78 297.0 389 39.8
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 5.4e-78 295.8 389 39.6
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 2.0e-77 293.9 420 40.7
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 5.0e-76 289.3 395 42.8
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 3.3e-75 286.6 424 40.8
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 4.2e-75 286.2 392 40.6
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.2e-75 286.2 389 38.6
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 2.1e-74 283.9 401 40.9
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 2.8e-74 283.5 411 41.8
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 1.8e-73 280.8 401 40.6
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 1.5e-72 277.7 395 39.2
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 1.7e-71 274.2 387 40.6
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 1.8e-70 270.8 400 37.0
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 9.2e-70 268.5 398 41.7
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 3.5e-69 266.5 392 36.7
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 2.9e-68 263.5 399 38.3
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 1.5e-67 261.2 367 39.2
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 1.2e-66 258.1 431 37.4
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 4.7e-66 256.1 403 40.9
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 2.3e-65 253.8 394 36.3
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 1.5e-64 251.1 432 34.5
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 6.4e-63 245.7 397 39.5
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 8.3e-63 245.4 403 40.2
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 1.4e-62 244.6 403 40.2
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 3.0e-60 236.9 388 36.3
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 3.0e-60 236.9 393 36.9
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 5.0e-60 236.1 416 36.5
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 8.6e-60 235.3 397 36.3
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 1.1e-59 235.0 393 37.2
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 1.5e-59 234.6 391 36.1
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 1.9e-59 234.2 400 36.8
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 4.3e-59 233.0 401 34.4
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 9.5e-59 231.9 396 35.4
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 9.5e-59 231.9 388 34.3
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 1.6e-58 231.1 395 38.0
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 8.1e-58 228.8 390 35.4
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 6.8e-57 225.7 406 34.2
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 6.8e-57 225.7 402 34.8
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 4.4e-56 223.0 389 33.9
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 9.8e-56 221.9 396 35.1
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 1.3e-55 221.5 382 34.6
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 1.3e-55 221.5 382 34.6
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 1.7e-55 221.1 382 34.6
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 6.4e-55 219.2 391 34.0
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 2.4e-54 217.2 386 34.2
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 2.4e-54 217.2 386 34.2
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 3.2e-54 216.9 389 33.7
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 4.1e-54 216.5 390 32.8
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 5.4e-54 216.1 395 35.4
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 5.4e-54 216.1 389 33.2
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 7.1e-54 215.7 397 33.5
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 1.6e-53 214.5 395 35.2
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 2.1e-53 214.2 434 33.9
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 1.0e-52 211.8 389 35.2
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 2.1e-50 204.1 396 32.8
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 3.1e-49 200.3 421 33.3
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 4.0e-49 199.9 393 33.3
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 4.4e-48 196.4 307 39.4
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 3.7e-47 193.4 305 36.1
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 7.1e-46 189.1 389 33.4
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 8.6e-44 182.2 324 34.3
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 1.9e-43 181.0 234 43.2
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 4.3e-43 179.9 426 30.3
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 2.1e-42 177.6 400 30.2
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 1.5e-40 171.4 439 30.8
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 3.4e-40 170.2 404 31.7
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 5.8e-40 169.5 374 32.4
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 1.2e-37 161.8 231 39.4
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.7e-37 160.6 403 31.3
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 2.7e-37 160.6 234 40.6
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 1.1e-33 148.7 298 33.6
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 6.0e-29 132.9 421 27.1
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 2.3e-28 131.0 407 27.0
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 1.6e-26 124.8 234 33.8
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 1.8e-25 121.3 180 39.4
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 2.4e-25 120.9 162 40.7
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 2.4e-25 120.9 376 29.8
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 4.9e-15 86.7 182 31.9
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 6.0e-13 79.7 295 25.1
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 2.6e-08 64.3 169 30.8
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 1.0e-07 62.4 87 39.1
SEGI_32623 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 2.2e-07 61.2 261 23.0
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 1.9e-06 58.2 156 27.6


User provided reference genes

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