Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.5E44W3 Arachis hypogaea HOM05D008132 ORTHO05D005763 1.6e-50 202.6 115 100.0
Medtr5g084330 Medicago truncatula HOM05D009657 ORTHO05D005763 9.7e-19 97.1 129 55.0
Oeu022674.1 Olea europaea HOM05D008132 ORTHO05D005763 5.5e-14 81.3 129 56.6
LjContig00357g0014262 Lotus japonicus HOM05D009657 ORTHO05D005763 1.6e-13 79.7 133 54.1
Cpa.g.sc132.70 Carica papaya HOM05D008132 ORTHO05D005763 2.1e-13 79.3 119 52.9
Cpa.g.sc132.73 Carica papaya HOM05D008132 ORTHO05D005763 2.1e-13 79.3 119 52.9
Glyma.14G051900 Glycine max HOM05D016758 ORTHO05D005763 1.0e-12 77.0 151 42.4
arahy.Tifrunner.gnm1.ann1.V70XEM Arachis hypogaea HOM05D064469 ORTHO05D005763 5.1e-12 74.7 116 51.7
arahy.Tifrunner.gnm1.ann1.4VA7BX Arachis hypogaea HOM05D064469 ORTHO05D005763 6.7e-12 74.3 116 49.1
Phvul.008G216600 Phaseolus vulgaris HOM05D016758 ORTHO05D005763 8.8e-12 73.9 143 46.9
QL08p029862 Quercus lobata HOM05D008132 ORTHO05D005763 8.8e-12 73.9 138 48.6
GSVIVG01030407001 Vitis vinifera HOM05D008132 ORTHO05D005763 1.1e-11 73.6 170 45.3
Glyma.14G052000 Glycine max HOM05D016758 ORTHO05D005763 2.0e-11 72.8 130 51.5
PGR042G2058 Punica granatum HOM05D008132 ORTHO05D005763 3.3e-11 72.0 129 50.4
Nn1g09274 Nelumbo nucifera HOM05D008132 ORTHO05D005763 4.3e-11 71.6 128 53.1
LjContig00357g0002258 Lotus japonicus HOM05D016758 ORTHO05D005763 1.7e-10 69.7 108 57.4
PGR042G0640 Punica granatum HOM05D008132 ORTHO05D005763 2.8e-10 68.9 118 49.2
Sopen09g035750 Solanum pennellii HOM05D012878 ORTHO05D005763 3.7e-10 68.6 138 49.3
Migut.G01096 Erythranthe guttata HOM05D008132 ORTHO05D005763 4.8e-10 68.2 145 51.7
EL10Ac9g22777 Beta vulgaris HOM05D008132 ORTHO05D005763 6.3e-10 67.8 159 44.7
Migut.G00657 Erythranthe guttata HOM05D008132 ORTHO05D005763 1.8e-09 66.2 122 42.6
Migut.G01101 Erythranthe guttata HOM05D008132 ORTHO05D005763 1.8e-09 66.2 122 42.6
Migut.O00629 Erythranthe guttata HOM05D008132 ORTHO05D005763 1.8e-09 66.2 122 42.6
Lalb_Chr04g0258791 Lupinus albus HOM05D021502 ORTHO05D005763 1.8e-09 66.2 124 41.1
Thecc.01G186700 Theobroma cacao HOM05D008132 ORTHO05D005763 1.8e-09 66.2 124 50.0
EL10Ac9g22778 Beta vulgaris HOM05D008132 ORTHO05D005763 4.1e-09 65.1 136 48.5
Cc03_g08950 Coffea canephora HOM05D008132 ORTHO05D005763 4.1e-09 65.1 132 50.8
Migut.G01155 Erythranthe guttata HOM05D008132 ORTHO05D005763 5.3e-09 64.7 141 48.9
PGR142G4197 Punica granatum HOM05D008132 ORTHO05D005763 6.9e-09 64.3 137 47.4
Nn1g09275 Nelumbo nucifera HOM05D008132 ORTHO05D005763 9.1e-09 63.9 138 47.8
Actinidia09763 Actinidia chinensis HOM05D008132 ORTHO05D005763 1.2e-08 63.5 152 41.4
Nn3g19166 Nelumbo nucifera HOM05D008132 ORTHO05D005763 1.2e-08 63.5 119 49.6
VMungo0647G2202 Vigna mungo HOM05D016758 ORTHO05D005763 1.2e-08 63.5 140 46.4
Nitab4.5_0000037g0280 Nicotiana tabacum HOM05D008132 ORTHO05D005763 2.0e-08 62.8 123 49.6
MD09G1118100 Malus domestica HOM05D008132 ORTHO05D005763 2.6e-08 62.4 121 53.7
C03p55470 Brassica napus HOM05D008158 ORTHO05D010323 3.4e-08 62.0 115 50.4
Gorai.006G083000 Gossypium raimondii HOM05D008132 ORTHO05D005763 3.4e-08 62.0 130 47.7
MSTRG.9649 Avicennia marina HOM05D008132 ORTHO05D005763 4.5e-08 61.6 114 52.6
COL.COLO4_04943 Corchorus olitorius HOM05D008132 ORTHO05D005763 4.5e-08 61.6 124 50.8
Thecc.01G236900 Theobroma cacao HOM05D008132 ORTHO05D005763 4.5e-08 61.6 136 49.3
Migut.G00827 Erythranthe guttata HOM05D008132 ORTHO05D005763 7.7e-08 60.8 148 45.9
Gohir.D07G195400 Gossypium hirsutum HOM05D008132 ORTHO05D005763 7.7e-08 60.8 133 46.6
MD09G1118600 Malus domestica HOM05D008132 ORTHO05D005763 7.7e-08 60.8 121 52.9
MSTRG.9648 Avicennia marina HOM05D008132 ORTHO05D005763 1.0e-07 60.5 122 45.1
Cc00_g35190 Coffea canephora HOM05D008132 ORTHO05D005763 1.0e-07 60.5 74 58.1
BcaB08g34503 Brassica carinata HOM05D008158 ORTHO05D010323 1.7e-07 59.7 123 47.2
AL3G42960 Arabidopsis lyrata HOM05D008158 ORTHO05D010323 2.9e-07 58.9 118 49.2
AT2G05540 Arabidopsis thaliana HOM05D008158 ORTHO05D010323 2.9e-07 58.9 130 45.4
A03p44640 Brassica napus HOM05D008158 ORTHO05D010323 2.9e-07 58.9 123 47.2
CARHR103240 Cardamine hirsuta HOM05D008158 ORTHO05D010323 3.8e-07 58.5 105 51.4
CiPaw.03G275800 Carya illinoinensis HOM05D052008 ORTHO05D005763 3.8e-07 58.5 111 44.1
Thhalv10017460m.g Eutrema salsugineum HOM05D008158 ORTHO05D010323 5.0e-07 58.2 102 49.0
MSTRG.4386 Avicennia marina HOM05D008132 ORTHO05D005763 6.5e-07 57.8 118 39.8
COL.COLO4_04941 Corchorus olitorius HOM05D008132 ORTHO05D005763 6.5e-07 57.8 150 43.3
Oeu022673.1 Olea europaea HOM05D008132 ORTHO05D005763 6.5e-07 57.8 161 42.2
PGSC0003DMG400017918 Solanum tuberosum HOM05D008132 ORTHO05D005763 6.5e-07 57.8 40 70.0
CAN.G2020.3 Capsicum annuum HOM05D012878 ORTHO05D005763 1.1e-06 57.0 122 46.7
RcHm_v2.0_Chr2g0157371 Rosa chinensis HOM05D019965 ORTHO05D005763 1.1e-06 57.0 117 49.6
BcaC01g03159 Brassica carinata HOM05D008158 ORTHO05D010323 1.9e-06 56.2 123 46.3
CANSAT56G4537 Cannabis sativa HOM05D008132 ORTHO05D005763 1.9e-06 56.2 133 49.6
CDE04G2682 Ceratophyllum demersum HOM05D008132 ORTHO05D005763 1.9e-06 56.2 129 36.4
Glyma.20G011500 Glycine max HOM05D021502 ORTHO05D005763 3.2e-06 55.5 121 37.2
Medtr5g084540 Medicago truncatula HOM05D009657 ORTHO05D005763 5.5e-06 54.7 62 59.7
Peaxi162Scf00286g00820 Petunia axillaris HOM05D008132 ORTHO05D005763 5.5e-06 54.7 119 40.3
Psat2g028520 Pisum sativum HOM05D009657 ORTHO05D005763 5.5e-06 54.7 48 64.6
THA.LOC104826607 Tarenaya hassleriana HOM05D008158 ORTHO05D010323 5.5e-06 54.7 124 45.2
COL.COLO4_04214 Corchorus olitorius HOM05D008132 ORTHO05D005763 7.2e-06 54.3 141 45.4
Nitab4.5_0000037g0290 Nicotiana tabacum HOM05D008132 ORTHO05D005763 7.2e-06 54.3 130 41.5
Psat0s2407g0280 Pisum sativum HOM05D009657 ORTHO05D005763 7.2e-06 54.3 71 47.9
Psat2g028040 Pisum sativum HOM05D009657 ORTHO05D005763 7.2e-06 54.3 60 55.0
Prupe.3G205800 Prunus persica HOM05D008132 ORTHO05D005763 7.2e-06 54.3 111 50.5
PGSC0003DMG400031534 Solanum tuberosum HOM05D015945 ORTHO05D017909 7.2e-06 54.3 106 45.3
COL.COLO4_36679 Corchorus olitorius HOM05D008132 ORTHO05D005763 9.4e-06 53.9 127 48.0
Psat0s1557g0040 Pisum sativum HOM05D009657 ORTHO05D005763 9.4e-06 53.9 54 59.3


User provided reference genes

Program Settings