Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.5E42VB Arachis hypogaea HOM05D004045 ORTHO05D083177 2.8e-55 218.4 111 100.0
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 2.2e-07 59.3 38 84.2
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 2.2e-07 59.3 38 84.2
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 2.2e-07 59.3 38 84.2
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 2.2e-07 59.3 38 84.2
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 2.8e-07 58.9 37 86.5
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 2.8e-07 58.9 36 86.1
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 2.8e-07 58.9 36 86.1
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 2.8e-07 58.9 36 86.1
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 2.8e-07 58.9 38 81.6
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 2.8e-07 58.9 36 86.1
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.8e-07 58.9 36 86.1
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 3.7e-07 58.5 38 81.6
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 3.7e-07 58.5 38 81.6
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 3.7e-07 58.5 38 81.6
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 3.7e-07 58.5 36 86.1
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 4.8e-07 58.2 38 81.6
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 4.8e-07 58.2 38 81.6
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 4.8e-07 58.2 36 86.1
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 4.8e-07 58.2 36 86.1
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 4.8e-07 58.2 38 81.6
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 4.8e-07 58.2 38 81.6
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 4.8e-07 58.2 36 86.1
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 4.8e-07 58.2 38 81.6
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 6.3e-07 57.8 36 83.3
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 6.3e-07 57.8 36 83.3
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 6.3e-07 57.8 36 83.3
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 6.3e-07 57.8 36 83.3
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 6.3e-07 57.8 36 83.3
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 8.2e-07 57.4 35 85.7
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 8.2e-07 57.4 36 83.3
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 8.2e-07 57.4 38 78.9
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.1e-06 57.0 38 81.6
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 1.1e-06 57.0 36 83.3
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 1.1e-06 57.0 36 83.3
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.1e-06 57.0 36 83.3
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.1e-06 57.0 36 86.1
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 1.4e-06 56.6 36 83.3
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 1.4e-06 56.6 36 83.3
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 1.4e-06 56.6 36 80.6
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 1.4e-06 56.6 36 83.3
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 1.4e-06 56.6 36 83.3
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.4e-06 56.6 36 83.3
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.4e-06 56.6 36 83.3
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.4e-06 56.6 36 83.3
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.4e-06 56.6 36 83.3
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.4e-06 56.6 36 83.3
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.4e-06 56.6 36 83.3
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.4e-06 56.6 36 83.3
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.4e-06 56.6 36 83.3
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 1.4e-06 56.6 36 83.3
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 1.4e-06 56.6 36 83.3
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.4e-06 56.6 36 83.3
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 1.4e-06 56.6 36 83.3
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.8e-06 56.2 36 80.6
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 1.8e-06 56.2 38 81.6
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 1.8e-06 56.2 38 81.6
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 1.8e-06 56.2 36 80.6
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 2.4e-06 55.8 38 76.3
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 2.4e-06 55.8 38 76.3
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.4e-06 55.8 36 80.6
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 3.1e-06 55.5 36 83.3
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 3.1e-06 55.5 36 80.6
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 3.1e-06 55.5 36 80.6
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.1e-06 55.5 36 80.6
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 3.1e-06 55.5 36 80.6
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 3.1e-06 55.5 36 80.6
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 3.1e-06 55.5 36 80.6
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 3.1e-06 55.5 36 80.6
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 3.1e-06 55.5 36 80.6
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 3.1e-06 55.5 38 76.3
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 4.1e-06 55.1 34 88.2
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 4.1e-06 55.1 34 88.2
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 4.1e-06 55.1 36 80.6
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 4.1e-06 55.1 45 71.1
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 4.1e-06 55.1 38 73.7
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 4.1e-06 55.1 47 66.0
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 4.1e-06 55.1 34 88.2
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 4.1e-06 55.1 36 80.6
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 4.1e-06 55.1 36 80.6
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 5.3e-06 54.7 35 82.9
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 5.3e-06 54.7 34 85.3
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 5.3e-06 54.7 38 73.7
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 6.9e-06 54.3 36 77.8
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 6.9e-06 54.3 36 77.8
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 6.9e-06 54.3 36 77.8
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 6.9e-06 54.3 36 77.8
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 9.1e-06 53.9 36 80.6
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 9.1e-06 53.9 36 77.8
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 9.1e-06 53.9 34 85.3


User provided reference genes

Program Settings