Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 2337.4 1221 100.0
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 2314.3 1221 99.1
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1749.9 1174 77.2
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 0.0e+00 1746.5 1224 77.1
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 0.0e+00 1742.2 1225 77.1
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 0.0e+00 1722.2 1223 75.9
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 0.0e+00 1698.7 1221 75.7
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1687.9 1173 75.4
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 0.0e+00 1679.1 1205 75.5
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 0.0e+00 1667.5 1173 74.8
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 0.0e+00 1633.2 1245 72.4
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1366.3 1193 62.8
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 1357.4 1231 62.0
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 1348.2 1228 61.9
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1336.2 1220 59.2
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1330.1 1177 62.6
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1327.0 1168 61.6
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1318.5 1212 61.3
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1312.0 1212 61.1
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1307.0 1217 58.8
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1301.6 1234 59.6
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1298.1 1235 59.2
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1297.7 1171 60.7
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1285.0 1231 60.1
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1281.5 1224 58.1
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1277.3 1225 59.3
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1271.9 1235 58.3
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1270.0 1218 59.8
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1269.2 1228 57.7
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 1268.8 1174 59.9
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1251.9 1168 60.2
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1247.3 1271 57.2
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1243.4 1281 56.6
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1221.1 1225 58.7
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1218.4 1217 56.9
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 0.0e+00 1214.5 1223 56.5
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1211.4 1183 57.5
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 0.0e+00 1204.5 1249 55.8
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1198.0 1241 54.9
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 0.0e+00 1189.1 1248 54.5
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 0.0e+00 1188.7 1145 57.8
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 0.0e+00 1177.2 1092 61.4
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1162.5 1218 56.3
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 0.0e+00 1156.0 1246 53.8
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 0.0e+00 1142.5 1170 54.4
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 0.0e+00 1141.7 1185 53.9
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 0.0e+00 1141.7 1219 54.4
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 0.0e+00 1141.7 1260 53.4
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1139.4 1306 52.1
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1138.6 1252 52.9
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 0.0e+00 1138.3 1250 53.4
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 0.0e+00 1137.5 1250 53.2
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 0.0e+00 1131.7 1181 54.8
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 0.0e+00 1127.9 1233 54.6
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 0.0e+00 1114.0 1186 53.1
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 0.0e+00 1099.3 1229 51.6
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 0.0e+00 1093.6 1199 52.5
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1092.8 747 77.0
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1088.6 1173 53.1
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 0.0e+00 1087.8 1185 52.7
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1075.8 1179 52.8
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 7.7e-308 1060.8 1183 51.1
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 2.9e-307 1058.9 1022 58.6
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 2.0e-303 1046.2 1245 50.3
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 4.7e-297 1025.0 1293 47.3
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 8.9e-296 1020.8 1221 50.0
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 2.6e-295 1019.2 1228 50.7
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 4.9e-294 1015.0 1172 50.1
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 4.5e-292 1008.4 1221 50.0
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 7.8e-292 1007.7 1184 50.7
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 8.9e-288 994.2 1193 49.3
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 1.4e-285 986.9 1241 48.5
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 1.0e-283 980.7 1223 47.6
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 9.8e-279 964.1 1259 47.8
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 8.3e-278 961.1 1237 49.4
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 6.8e-272 941.4 1086 52.0
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 2.0e-271 939.9 1178 48.1
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 1.1e-266 924.1 1124 49.5
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 1.2e-265 920.6 1176 46.1
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 2.0e-263 913.3 1050 51.4
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 1.1e-261 907.5 774 65.2
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 1.3e-259 900.6 1301 45.0
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 1.8e-243 847.0 1177 43.8
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 1.9e-237 827.0 1164 43.6
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 2.0e-223 780.4 1068 44.8
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 5.5e-213 745.7 708 58.3
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 2.9e-206 723.4 1168 41.7
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 1.1e-202 711.4 981 44.0
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 2.2e-169 600.9 1254 35.2
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 1.6e-167 594.7 401 74.8
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 4.9e-161 573.2 1170 34.9
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 1.6e-159 568.2 626 50.3
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 9.6e-149 532.3 1247 34.1
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 3.5e-143 513.8 1147 36.1
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 1.4e-123 448.7 619 45.2
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 2.7e-119 434.5 270 82.6
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 1.8e-107 395.2 386 54.1
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 3.5e-90 337.8 263 69.2
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 7.7e-90 336.7 449 48.6
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 2.6e-85 321.6 522 38.9
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 1.7e-68 265.8 1300 27.1
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 4.3e-64 251.1 392 38.5
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 3.5e-42 178.3 211 47.9
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 4.3e-32 144.8 92 73.9
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.7e-28 132.9 86 69.8
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 4.2e-27 128.3 74 75.7
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 5.4e-27 127.9 107 53.3
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 1.6e-26 126.3 110 54.5
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 3.9e-25 121.7 149 47.0
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 1.5e-24 119.8 111 51.4
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 9.6e-24 117.1 174 44.8
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 8.1e-23 114.0 116 60.3
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 3.0e-17 95.5 81 54.3
Cre07.g347700 Chlamydomonas reinhardtii HOM05D006963 ORTHO05D141144 7.4e-08 64.3 148 29.1
Pp3c7_26050 Physcomitrium patens HOM05D006963 ORTHO05D008783 3.7e-07 62.0 74 40.5


User provided reference genes

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