Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.5AJQ1U Arachis hypogaea HOM05D001579 ORTHO05D003470 4.4e-52 207.6 99 100.0
arahy.Tifrunner.gnm1.ann1.D5Q7RU Arachis hypogaea HOM05D001579 ORTHO05D003470 7.0e-34 147.1 82 85.4
arahy.Tifrunner.gnm1.ann1.IB6GCN Arachis hypogaea HOM05D001579 ORTHO05D003470 3.5e-33 144.8 82 84.1
Lalb_Chr03g0025691 Lupinus albus HOM05D001579 ORTHO05D003470 4.4e-28 127.9 82 74.4
Prupe.8G096800 Prunus persica HOM05D001579 ORTHO05D003470 9.8e-28 126.7 82 72.0
VMungo1127G1806 Vigna mungo HOM05D001579 ORTHO05D003470 9.8e-28 126.7 82 72.0
Phvul.011G045200 Phaseolus vulgaris HOM05D001579 ORTHO05D003470 1.7e-27 125.9 82 70.7
Lj1g0020223 Lotus japonicus HOM05D001579 ORTHO05D003470 2.2e-27 125.6 82 72.0
Medtr4g070040 Medicago truncatula HOM05D001579 ORTHO05D003470 2.9e-27 125.2 82 72.0
Glyma.12G043200 Glycine max HOM05D001579 ORTHO05D003470 3.7e-27 124.8 82 72.0
Psat7g141360 Pisum sativum HOM05D001579 ORTHO05D003470 3.7e-27 124.8 82 68.3
Lj3g0013700 Lotus japonicus HOM05D001579 ORTHO05D003470 4.9e-27 124.4 82 69.5
Lalb_Chr01g0002541 Lupinus albus HOM05D001579 ORTHO05D003470 1.1e-26 123.2 82 72.0
Atru.chr5.3017 Acer truncatum HOM05D001579 ORTHO05D003470 1.4e-26 122.9 103 57.3
Cpa.g.sc62.152 Carica papaya HOM05D001579 ORTHO05D003470 2.4e-26 122.1 91 63.7
AL7G11270 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 3.2e-26 121.7 103 57.3
AT4G39280 Arabidopsis thaliana HOM05D001579 ORTHO05D003470 3.2e-26 121.7 103 57.3
Glyma.11G117800 Glycine max HOM05D001579 ORTHO05D003470 3.2e-26 121.7 82 69.5
Aa31LG7G14810 Aethionema arabicum HOM05D001579 ORTHO05D003470 4.1e-26 121.3 94 60.6
TPR.G23438 Trifolium pratense HOM05D001579 ORTHO05D003470 4.1e-26 121.3 82 69.5
CiPaw.05G064600 Carya illinoinensis HOM05D001579 ORTHO05D003470 5.4e-26 120.9 82 67.1
Ca_01102_v3 Cicer arietinum L. HOM05D001579 ORTHO05D003470 5.4e-26 120.9 82 68.3
TWI79G0010 Tripterygium wilfordii HOM05D001579 ORTHO05D003470 5.4e-26 120.9 94 59.6
Ciclev10028310m.g Citrus clementina HOM05D001579 ORTHO05D003470 7.0e-26 120.6 94 60.6
TPR.G19411 Trifolium pratense HOM05D001579 ORTHO05D003470 7.0e-26 120.6 82 68.3
MD05G1066200 Malus domestica HOM05D001579 ORTHO05D003470 9.2e-26 120.2 82 67.1
THA.LOC104824827 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 1.2e-25 119.8 94 61.7
CARHR247410 Cardamine hirsuta HOM05D001579 ORTHO05D003470 1.6e-25 119.4 103 56.3
ClCG10G001880 Citrullus lanatus HOM05D001579 ORTHO05D003470 2.7e-25 118.6 82 69.5
MELO3C013873.2 Cucumis melo HOM05D001579 ORTHO05D003470 2.7e-25 118.6 82 69.5
Carub.0007s0120 Capsella rubella HOM05D001579 ORTHO05D003470 3.5e-25 118.2 103 56.3
Cfa005003 Carpinus fangiana HOM05D001579 ORTHO05D003470 4.6e-25 117.9 94 61.7
CsaV3_3G002020 Cucumis sativus L. HOM05D001579 ORTHO05D003470 4.6e-25 117.9 82 69.5
TAR628G1064 Trochodendron aralioides HOM05D001579 ORTHO05D003470 4.6e-25 117.9 82 67.1
Manes.17G101200 Manihot esculenta HOM05D001579 ORTHO05D003470 5.9e-25 117.5 94 59.6
QL11p043704 Quercus lobata HOM05D001579 ORTHO05D003470 5.9e-25 117.5 94 60.6
Thecc.02G085100 Theobroma cacao HOM05D001579 ORTHO05D003470 5.9e-25 117.5 94 58.5
vmacro11112 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 1.0e-24 116.7 82 63.4
MD10G1076200 Malus domestica HOM05D001579 ORTHO05D003470 1.7e-24 115.9 82 64.6
COL.COLO4_25932 Corchorus olitorius HOM05D001579 ORTHO05D003470 2.3e-24 115.5 94 57.4
GSVIVG01031967001 Vitis vinifera HOM05D001579 ORTHO05D003470 2.3e-24 115.5 82 65.9
Actinidia27894 Actinidia chinensis HOM05D001579 ORTHO05D003470 3.0e-24 115.2 82 64.6
CANSAT80G0427 Cannabis sativa HOM05D001579 ORTHO05D003470 3.0e-24 115.2 94 59.6
Haze_02385 Corylus avellana HOM05D001579 ORTHO05D003470 3.9e-24 114.8 94 58.5
Eucgr.D00245 Eucalyptus grandis HOM05D001579 ORTHO05D003470 3.9e-24 114.8 82 64.6
Gorai.012G155500 Gossypium raimondii HOM05D001579 ORTHO05D003470 3.9e-24 114.8 94 57.4
Gohir.A04G130900 Gossypium hirsutum HOM05D001579 ORTHO05D003470 5.0e-24 114.4 94 57.4
Gohir.D04G167200 Gossypium hirsutum HOM05D001579 ORTHO05D003470 5.0e-24 114.4 94 57.4
CSS0013099 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 6.6e-24 114.0 82 61.0
CSS0049673 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 6.6e-24 114.0 82 61.0
Nn1g01939 Nelumbo nucifera HOM05D001579 ORTHO05D003470 6.6e-24 114.0 82 64.6
Duzib132G0542 Durio zibethinus HOM05D001579 ORTHO05D003470 8.6e-24 113.6 94 57.4
Sc13g0008990 Simmondsia chinensis HOM05D001579 ORTHO05D003470 1.1e-23 113.2 82 61.0
TAR376G1017 Trochodendron aralioides HOM05D001579 ORTHO05D003470 1.9e-23 112.5 82 64.6
Actinidia00524 Actinidia chinensis HOM05D001579 ORTHO05D003470 2.5e-23 112.1 82 59.8
Rhsim11G0177200 Rhododendron simsii HOM05D001579 ORTHO05D003470 2.5e-23 112.1 81 58.0
Peaxi162Scf00016g00732 Petunia axillaris HOM05D001579 ORTHO05D003470 4.3e-23 111.3 82 61.0
THA.LOC104804143 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 4.3e-23 111.3 94 56.4
Sed0021732 Sechium edule HOM05D001579 ORTHO05D003470 5.6e-23 110.9 82 64.6
CSS0031219 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 7.3e-23 110.5 82 59.8
Hma1.2p1_1375F.1_g279070 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 9.5e-23 110.2 94 57.4
Nitab4.5_0000974g0080 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.6e-22 109.4 82 59.8
MBI01_g34891_MAGBIO Magnolia biondii HOM05D001579 ORTHO05D003470 2.1e-22 109.0 81 60.5
ECA240G1027 Erigeron canadensis HOM05D001579 ORTHO05D003470 3.6e-22 108.2 94 55.3
C08p41200 Brassica napus HOM05D001579 ORTHO05D003470 4.7e-22 107.8 94 56.4
CDE04G1236 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 4.7e-22 107.8 82 63.4
ATR0051G048 Amborella trichopoda HOM05D001579 ORTHO05D003470 6.2e-22 107.5 82 62.2
BcaC07g41119 Brassica carinata HOM05D001579 ORTHO05D003470 6.2e-22 107.5 94 55.3
BolC8t51687H Brassica oleracea HOM05D001579 ORTHO05D003470 6.2e-22 107.5 94 55.3
Potri.004G155000 Populus trichocarpa HOM05D001579 ORTHO05D003470 6.2e-22 107.5 94 55.3
Sabra04G0102800 Salix brachista HOM05D001579 ORTHO05D003470 6.2e-22 107.5 94 54.3
A09p57990 Brassica napus HOM05D001579 ORTHO05D003470 8.0e-22 107.1 94 54.3
HanXRQChr14g0437911 Helianthus annuus HOM05D001579 ORTHO05D003470 8.0e-22 107.1 94 56.4
Lj2C359T3 Lonicera japonica HOM05D001579 ORTHO05D003470 8.0e-22 107.1 82 61.0
BcaB08g35003 Brassica carinata HOM05D001579 ORTHO05D003470 1.4e-21 106.3 94 55.3
BraA09t41189Z Brassica rapa HOM05D001579 ORTHO05D003470 1.4e-21 106.3 94 53.2
Lj7A248G13 Lonicera japonica HOM05D001579 ORTHO05D003470 1.4e-21 106.3 82 59.8
Nitab4.5_0004172g0030 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.4e-21 106.3 82 59.8
CDE06G0853 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 1.8e-21 105.9 82 62.2
Nitab4.5_0011688g0020 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.8e-21 105.9 82 57.3
EL10Ac3g05071 Beta vulgaris HOM05D001579 ORTHO05D003470 2.3e-21 105.5 82 61.0
Oeu041647.1 Olea europaea HOM05D001579 ORTHO05D003470 2.3e-21 105.5 82 61.0
MSTRG.16808 Avicennia marina HOM05D001579 ORTHO05D003470 3.1e-21 105.1 82 59.8
Lj7A253G28 Lonicera japonica HOM05D001579 ORTHO05D003470 3.1e-21 105.1 82 58.5
Carub.0004s0076 Capsella rubella HOM05D001579 ORTHO05D003470 4.0e-21 104.8 94 54.3
Migut.B00751 Erythranthe guttata HOM05D001579 ORTHO05D003470 4.0e-21 104.8 82 61.0
Ah.12g056180 Amaranthus hybridus HOM05D001579 ORTHO05D003470 5.2e-21 104.4 82 62.2
Nitab4.5_0000308g0090 Nicotiana tabacum HOM05D001579 ORTHO05D003470 6.8e-21 104.0 82 58.5
PGR042G0613 Punica granatum HOM05D001579 ORTHO05D003470 6.8e-21 104.0 94 55.3
Solyc02g090860.3 Solanum lycopersicum HOM05D001579 ORTHO05D003470 6.8e-21 104.0 81 55.6
PGSC0003DMG400004021 Solanum tuberosum HOM05D001579 ORTHO05D003470 8.9e-21 103.6 81 55.6
ATR1101G051 Amborella trichopoda HOM05D001579 ORTHO05D003470 1.2e-20 103.2 81 59.3
AL7G31990 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 1.2e-20 103.2 94 51.1
Hund14641 Selenicereus undatus HOM05D001579 ORTHO05D003470 1.2e-20 103.2 82 59.8
Sopen02g035480 Solanum pennellii HOM05D001579 ORTHO05D003470 1.2e-20 103.2 81 55.6
PGSC0003DMG400025010 Solanum tuberosum HOM05D001579 ORTHO05D003470 1.2e-20 103.2 81 55.6
CAN.G1298.23 Capsicum annuum HOM05D001579 ORTHO05D003470 2.6e-20 102.1 94 48.9
Potri.009G116100 Populus trichocarpa HOM05D001579 ORTHO05D003470 2.6e-20 102.1 91 53.8
DCAR_006199 Daucus carota HOM05D001579 ORTHO05D003470 7.5e-20 100.5 82 56.1
SHI02915 Sapria himalayana HOM05D001579 ORTHO05D003470 7.5e-20 100.5 94 50.0
BcaB03g12963 Brassica carinata HOM05D001579 ORTHO05D003470 9.8e-20 100.1 86 53.5
Oeu015994.1 Olea europaea HOM05D001579 ORTHO05D003470 9.8e-20 100.1 82 59.8
BraA04t17272Z Brassica rapa HOM05D001579 ORTHO05D003470 1.3e-19 99.8 94 54.3
Cc02_g25820 Coffea canephora HOM05D001579 ORTHO05D003470 1.3e-19 99.8 82 54.9
BcaC02g08772 Brassica carinata HOM05D001579 ORTHO05D003470 1.7e-19 99.4 94 54.3
C04p50830 Brassica napus HOM05D001579 ORTHO05D003470 1.7e-19 99.4 94 54.3
BolC4t26677H Brassica oleracea HOM05D001579 ORTHO05D003470 1.7e-19 99.4 94 54.3
Solyc10g007060.4 Solanum lycopersicum HOM05D001579 ORTHO05D003470 1.7e-19 99.4 81 54.3
Sopen10g002960 Solanum pennellii HOM05D001579 ORTHO05D003470 1.7e-19 99.4 81 54.3
A04p16340 Brassica napus HOM05D001579 ORTHO05D003470 2.9e-19 98.6 91 54.9
A10p12820 Brassica napus HOM05D001579 ORTHO05D003470 2.9e-19 98.6 94 50.0
BraA10t43375Z Brassica rapa HOM05D001579 ORTHO05D003470 2.9e-19 98.6 94 50.0
Thhalv10007412m.g Eutrema salsugineum HOM05D001579 ORTHO05D003470 3.7e-19 98.2 89 50.6
Ah.02g117280 Amaranthus hybridus HOM05D001579 ORTHO05D003470 4.9e-19 97.8 82 57.3
Carub.0005s1088 Capsella rubella HOM05D001579 ORTHO05D003470 4.9e-19 97.8 92 45.7
unitig_0.g66 Utricularia gibba HOM05D001579 ORTHO05D003470 8.3e-19 97.1 114 46.5
CAN.G1412.7 Capsicum annuum HOM05D001579 ORTHO05D003470 1.1e-18 96.7 81 53.1
AL4G10950 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 1.4e-18 96.3 94 48.9
BcaB01g00883 Brassica carinata HOM05D001579 ORTHO05D003470 2.4e-18 95.5 94 48.9
AUR62034498 Chenopodium quinoa HOM05D001579 ORTHO05D003470 2.4e-18 95.5 82 53.7
BcaB06g27782 Brassica carinata HOM05D001579 ORTHO05D003470 3.2e-18 95.1 86 52.3
AUR62003165 Chenopodium quinoa HOM05D001579 ORTHO05D003470 7.0e-18 94.0 82 53.7
HPP92_002580 Vanilla planifolia HOM05D001579 ORTHO05D003470 7.0e-18 94.0 82 52.4
C09p46380 Brassica napus HOM05D001579 ORTHO05D003470 1.2e-17 93.2 86 51.2
PSO478G3633 Papaver somniferum HOM05D001579 ORTHO05D003470 2.0e-17 92.4 95 47.4
SalBow6G0592 Salvia bowleyana HOM05D001579 ORTHO05D003470 2.0e-17 92.4 82 54.9
SalBow6G1678 Salvia bowleyana HOM05D001579 ORTHO05D003470 2.0e-17 92.4 82 54.9
BcaC01g00633 Brassica carinata HOM05D001579 ORTHO05D003470 2.7e-17 92.0 94 50.0
PSO447G0328 Papaver somniferum HOM05D001579 ORTHO05D003470 6.0e-17 90.9 95 44.2
FAN20G1104 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.3e-16 89.0 81 49.4
AUR62034190 Chenopodium quinoa HOM05D001579 ORTHO05D003470 3.0e-16 88.6 82 52.4
FvH4_2g08790 Fragaria vesca HOM05D001579 ORTHO05D003470 6.6e-16 87.4 81 48.1
FAN24G0111 Fragaria x ananassa HOM05D001579 ORTHO05D003470 6.6e-16 87.4 81 48.1
RcHm_v2.0_Chr6g0259031 Rosa chinensis HOM05D001579 ORTHO05D003470 8.6e-16 87.0 82 50.0
RcHm_v2.0_Chr7g0204471 Rosa chinensis HOM05D001579 ORTHO05D003470 8.6e-16 87.0 98 44.9
Aqoxy7G01384 Aquilegia oxysepala HOM05D001579 ORTHO05D003470 2.5e-15 85.5 93 40.9
FAN15G0032 Fragaria x ananassa HOM05D001579 ORTHO05D003470 3.3e-15 85.1 81 46.9
FvH4_3g28200 Fragaria vesca HOM05D001579 ORTHO05D003470 4.3e-15 84.7 82 46.3
FAN11G3917 Fragaria x ananassa HOM05D001579 ORTHO05D003470 4.3e-15 84.7 82 46.3
FAN16G2055 Fragaria x ananassa HOM05D001579 ORTHO05D003470 4.3e-15 84.7 82 46.3
FAN21G0623 Fragaria x ananassa HOM05D001579 ORTHO05D003470 5.6e-15 84.3 82 46.3
FAN27G2756 Fragaria x ananassa HOM05D001579 ORTHO05D003470 7.3e-15 84.0 81 46.9
RcHm_v2.0_Chr6g0264251 Rosa chinensis HOM05D001579 ORTHO05D003470 7.3e-15 84.0 81 44.4
FAN16G0460 Fragaria x ananassa HOM05D001579 ORTHO05D003470 9.5e-15 83.6 82 45.1
AagrBONN_evm.TU.Sc2ySwM_344.2010 Anthoceros agrestis HOM05D001579 ORTHO05D003470 6.2e-14 80.9 82 41.5
SMO119G0093 Selaginella moellendorffii HOM05D001579 ORTHO05D003470 5.2e-13 77.8 79 40.5
Pp3c2_16770 Physcomitrium patens HOM05D001579 ORTHO05D003470 1.2e-12 76.6 80 45.0
Os10g0400800 Oryza sativa ssp. japonica HOM05D001579 ORTHO05D003470 2.0e-12 75.9 80 46.2
Rhsim05G0074300 Rhododendron simsii HOM05D001579 ORTHO05D003470 3.4e-12 75.1 85 45.9
Zm00001eb255720 Zea mays HOM05D001579 ORTHO05D003470 1.7e-11 72.8 100 40.0
Mapoly0012s0145 Marchantia polymorpha HOM05D001579 ORTHO05D003470 3.7e-11 71.6 82 40.2
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 9.2e-10 67.0 58 53.4
BcaB03g15109 Brassica carinata HOM05D001579 ORTHO05D003470 6.0e-09 64.3 57 56.1
BcaC08g46253 Brassica carinata HOM05D001579 ORTHO05D003470 6.0e-09 64.3 57 56.1
BcaC08g46255 Brassica carinata HOM05D001579 ORTHO05D003470 6.0e-09 64.3 57 56.1
Medtr7g038870 Medicago truncatula HOM05D009713 ORTHO05D001923 1.3e-08 63.2 86 41.9
HanXRQChr14g0446281 Helianthus annuus HOM05D001579 ORTHO05D003470 1.6e-06 56.2 47 55.3
Aa31LG3G6010 Aethionema arabicum HOM05D001579 ORTHO05D003470 2.8e-06 55.5 45 57.8


User provided reference genes

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