Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.596IVE Arachis hypogaea HOM05D000383 ORTHO05D021517 1.4e-40 169.1 79 100.0
arahy.Tifrunner.gnm1.ann1.DUH36G Arachis hypogaea HOM05D001300 ORTHO05D021517 1.7e-30 135.6 106 67.0
arahy.Tifrunner.gnm1.ann1.V14AVL Arachis hypogaea HOM05D000383 ORTHO05D021517 2.4e-16 88.6 39 100.0
arahy.Tifrunner.gnm1.ann1.R607WF Arachis hypogaea HOM05D000383 ORTHO05D021517 4.5e-15 84.3 39 97.4
arahy.Tifrunner.gnm1.ann1.ZUR202 Arachis hypogaea HOM05D000383 ORTHO05D021517 2.2e-14 82.0 36 100.0
arahy.Tifrunner.gnm1.ann1.PH2T15 Arachis hypogaea HOM05D000383 ORTHO05D001666 2.3e-11 72.0 61 57.4
arahy.Tifrunner.gnm1.ann1.QUB6RF Arachis hypogaea HOM05D000383 ORTHO05D001666 2.3e-11 72.0 61 57.4
Lalb_Chr09g0323961 Lupinus albus HOM05D000383 ORTHO05D001666 2.5e-10 68.6 50 62.0
Lalb_Chr16g0379251 Lupinus albus HOM05D000383 ORTHO05D001666 2.5e-10 68.6 50 62.0
Phvul.003G228000 Phaseolus vulgaris HOM05D000383 ORTHO05D001666 1.3e-09 66.2 46 67.4
arahy.Tifrunner.gnm1.ann1.N58NZT Arachis hypogaea HOM05D001300 ORTHO05D007762 1.6e-09 65.9 33 81.8
Ciclev10032508m.g Citrus clementina HOM05D000383 ORTHO05D001666 2.8e-09 65.1 41 70.7
Lj4g0001993 Lotus japonicus HOM05D000383 ORTHO05D001666 3.7e-09 64.7 32 87.5
TWI60G1430 Tripterygium wilfordii HOM05D000383 ORTHO05D001666 3.7e-09 64.7 40 70.0
Glyma.17G151700 Glycine max HOM05D000383 ORTHO05D001666 4.8e-09 64.3 37 75.7
Lalb_Chr09g0329611 Lupinus albus HOM05D000383 ORTHO05D001666 4.8e-09 64.3 37 75.7
arahy.Tifrunner.gnm1.ann1.1RS262 Arachis hypogaea HOM05D000383 ORTHO05D001666 6.2e-09 63.9 32 81.2
Manes.17G018100 Manihot esculenta HOM05D000383 ORTHO05D001666 6.2e-09 63.9 41 70.7
Glyma.01G148002 Glycine max HOM05D000383 ORTHO05D021517 8.1e-09 63.5 32 84.4
Glyma.11G040700 Glycine max HOM05D000383 ORTHO05D001666 8.1e-09 63.5 32 84.4
Phvul.002G004100 Phaseolus vulgaris HOM05D000383 ORTHO05D001666 8.1e-09 63.5 32 84.4
TWI15G0377 Tripterygium wilfordii HOM05D000383 ORTHO05D001666 8.1e-09 63.5 40 70.0
arahy.Tifrunner.gnm1.ann1.24DBAE Arachis hypogaea HOM05D001300 ORTHO05D007762 1.1e-08 63.2 33 78.8
CiPaw.12G060000 Carya illinoinensis HOM05D000383 ORTHO05D001666 1.1e-08 63.2 41 70.7
Ca_22041_v3 Cicer arietinum L. HOM05D000383 ORTHO05D001666 1.1e-08 63.2 40 72.5
Glyma.05G069100 Glycine max HOM05D000383 ORTHO05D001666 1.1e-08 63.2 37 73.0
Medtr4g098930 Medicago truncatula HOM05D000383 ORTHO05D001666 1.1e-08 63.2 32 84.4
Cc08_g01830 Coffea canephora HOM05D000383 ORTHO05D001666 1.4e-08 62.8 48 56.2
Cc08_g01860 Coffea canephora HOM05D000383 ORTHO05D001666 1.4e-08 62.8 48 56.2
arahy.Tifrunner.gnm1.ann1.NU762S Arachis hypogaea HOM05D000383 ORTHO05D001666 1.8e-08 62.4 32 78.1
Glyma.01G202100 Glycine max HOM05D000383 ORTHO05D001666 2.4e-08 62.0 32 81.2
Glyma.03G089300 Glycine max HOM05D001300 ORTHO05D007762 2.4e-08 62.0 33 78.8
TPR.G19182 Trifolium pratense HOM05D000383 ORTHO05D001666 2.4e-08 62.0 32 81.2
Eucgr.E00317 Eucalyptus grandis HOM05D000383 ORTHO05D001666 3.1e-08 61.6 41 65.9
Sabra03G0056700 Salix brachista HOM05D000383 ORTHO05D001666 3.1e-08 61.6 32 81.2
Actinidia31474 Actinidia chinensis HOM05D000383 ORTHO05D001666 4.0e-08 61.2 40 67.5
COL.COLO4_17115 Corchorus olitorius HOM05D000383 ORTHO05D001666 4.0e-08 61.2 40 70.0
Dinv25181 Davidia involucrata HOM05D000383 ORTHO05D001666 4.0e-08 61.2 39 69.2
Duzib084G0514 Durio zibethinus HOM05D000383 ORTHO05D001666 4.0e-08 61.2 40 70.0
Gohir.A08G159900 Gossypium hirsutum HOM05D000383 ORTHO05D001666 4.0e-08 61.2 39 71.8
Gohir.D08G180300 Gossypium hirsutum HOM05D000383 ORTHO05D001666 4.0e-08 61.2 39 71.8
Gorai.004G188800 Gossypium raimondii HOM05D000383 ORTHO05D001666 4.0e-08 61.2 39 71.8
Gorai.008G229300 Gossypium raimondii HOM05D000383 ORTHO05D001666 4.0e-08 61.2 40 70.0
Hma1.2p1_0311F.1_g121250 Hydrangea macrophylla HOM05D000383 ORTHO05D001666 4.0e-08 61.2 32 81.2
Nn1g00633 Nelumbo nucifera HOM05D000383 ORTHO05D001666 4.0e-08 61.2 39 71.8
AUR62018781 Chenopodium quinoa HOM05D000383 ORTHO05D001666 5.3e-08 60.8 36 72.2
Gohir.D12G213700 Gossypium hirsutum HOM05D000383 ORTHO05D001666 5.3e-08 60.8 40 70.0
Lj8C289G1 Lonicera japonica HOM05D000383 ORTHO05D001666 5.3e-08 60.8 32 78.1
Nn6g33681 Nelumbo nucifera HOM05D000383 ORTHO05D001666 5.3e-08 60.8 31 80.6
Potri.001G147200 Populus trichocarpa HOM05D000383 ORTHO05D001666 5.3e-08 60.8 41 65.9
Thecc.03G234700 Theobroma cacao HOM05D000383 ORTHO05D001666 5.3e-08 60.8 40 70.0
CSS0013120 Camellia sinensis var. sinensis HOM05D000383 ORTHO05D001666 6.9e-08 60.5 32 78.1
CSS0019143 Camellia sinensis var. sinensis HOM05D000383 ORTHO05D001666 6.9e-08 60.5 32 78.1
Ca_23190_v3 Cicer arietinum L. HOM05D001300 ORTHO05D007762 6.9e-08 60.5 35 71.4
Lj3g0000727 Lotus japonicus HOM05D001300 ORTHO05D007762 6.9e-08 60.5 35 71.4
Potri.003G087000 Populus trichocarpa HOM05D000383 ORTHO05D001666 6.9e-08 60.5 41 65.9
Prupe.5G047300 Prunus persica HOM05D000383 ORTHO05D001666 6.9e-08 60.5 36 72.2
Haze_08306 Corylus avellana HOM05D000383 ORTHO05D001666 9.0e-08 60.1 32 78.1
Dinv28912 Davidia involucrata HOM05D000383 ORTHO05D001666 9.0e-08 60.1 32 78.1
FAN08G3619 Fragaria x ananassa HOM05D000383 ORTHO05D001666 9.0e-08 60.1 32 78.1
FAN13G1006 Fragaria x ananassa HOM05D000383 ORTHO05D001666 9.0e-08 60.1 32 78.1
Glyma.16G083800 Glycine max HOM05D001300 ORTHO05D007762 9.0e-08 60.1 33 75.8
QL12p007247 Quercus lobata HOM05D000383 ORTHO05D001666 9.0e-08 60.1 32 78.1
Rhsim07G0121500 Rhododendron simsii HOM05D000383 ORTHO05D001666 9.0e-08 60.1 32 78.1
TAR629G3350 Trochodendron aralioides HOM05D000383 ORTHO05D001666 9.0e-08 60.1 31 77.4
vmacro00353 Vaccinium macrocarpon HOM05D000383 ORTHO05D001666 9.0e-08 60.1 32 78.1
Actinidia10878 Actinidia chinensis HOM05D000383 ORTHO05D001666 1.5e-07 59.3 40 65.0
MELO3C003371.2 Cucumis melo HOM05D000383 ORTHO05D001666 1.5e-07 59.3 40 65.0
Duzib205G0382 Durio zibethinus HOM05D000383 ORTHO05D001666 1.5e-07 59.3 40 67.5
Nitab4.5_0009567g0010 Nicotiana tabacum HOM05D000383 ORTHO05D001666 1.5e-07 59.3 32 78.1
Peaxi162Scf00084g00716 Petunia axillaris HOM05D000383 ORTHO05D001666 1.5e-07 59.3 32 78.1
TPR.G2045 Trifolium pratense HOM05D001300 ORTHO05D007762 1.5e-07 59.3 35 71.4
vmacro14144 Vaccinium macrocarpon HOM05D000383 ORTHO05D001666 1.5e-07 59.3 32 75.0
Actinidia25941 Actinidia chinensis HOM05D000383 ORTHO05D001666 2.0e-07 58.9 32 75.0
Ah.12g053700 Amaranthus hybridus HOM05D000383 ORTHO05D001666 2.0e-07 58.9 36 69.4
EL10As14g24076 Beta vulgaris HOM05D000383 ORTHO05D001666 2.0e-07 58.9 36 69.4
Migut.A00275 Erythranthe guttata HOM05D000383 ORTHO05D001666 2.0e-07 58.9 40 60.0
Manes.17G018000 Manihot esculenta HOM05D000383 ORTHO05D001666 2.0e-07 58.9 32 78.1
Medtr8g011530 Medicago truncatula HOM05D001300 ORTHO05D007762 2.0e-07 58.9 35 71.4
PSO782G5317 Papaver somniferum HOM05D000383 ORTHO05D001666 2.0e-07 58.9 30 80.0
Phvul.010G030800 Phaseolus vulgaris HOM05D001300 ORTHO05D007762 2.0e-07 58.9 33 75.8
RcHm_v2.0_Chr7g0208241 Rosa chinensis HOM05D000383 ORTHO05D001666 2.0e-07 58.9 39 69.2
SalBow4G1351 Salvia bowleyana HOM05D000383 ORTHO05D001666 2.0e-07 58.9 32 71.9
TAR636G0573 Trochodendron aralioides HOM05D000383 ORTHO05D001666 2.0e-07 58.9 39 66.7
AUR62007220 Chenopodium quinoa HOM05D000383 ORTHO05D001666 2.6e-07 58.5 36 69.4
Hund14432 Selenicereus undatus HOM05D000383 ORTHO05D001666 2.6e-07 58.5 41 61.0
Sc22g0001360 Simmondsia chinensis HOM05D000383 ORTHO05D001666 2.6e-07 58.5 36 66.7
GSVIVG01013208001 Vitis vinifera HOM05D000383 ORTHO05D001666 2.6e-07 58.5 31 74.2
Nitab4.5_0002055g0020 Nicotiana tabacum HOM05D000383 ORTHO05D001666 3.4e-07 58.2 32 75.0
Solyc08g077330.3 Solanum lycopersicum HOM05D000383 ORTHO05D001666 3.4e-07 58.2 32 75.0
Sopen08g025910 Solanum pennellii HOM05D000383 ORTHO05D001666 3.4e-07 58.2 32 75.0
PGSC0003DMG400001848 Solanum tuberosum HOM05D000383 ORTHO05D001666 3.4e-07 58.2 32 75.0
Haze_08309 Corylus avellana HOM05D000383 ORTHO05D001666 4.5e-07 57.8 32 75.0
FAN18G3320 Fragaria x ananassa HOM05D000383 ORTHO05D001666 4.5e-07 57.8 32 75.0
CiPaw.11G087300 Carya illinoinensis HOM05D000383 ORTHO05D001666 5.8e-07 57.4 37 67.6
Hma1.2p1_0781F.1_g216870 Hydrangea macrophylla HOM05D001300 ORTHO05D007762 5.8e-07 57.4 47 53.2
Sabra01G0115700 Salix brachista HOM05D000383 ORTHO05D001666 5.8e-07 57.4 40 65.0
Hund11273 Selenicereus undatus HOM05D000383 ORTHO05D001666 5.8e-07 57.4 36 66.7
ClCG09G012380 Citrullus lanatus HOM05D000383 ORTHO05D001666 7.6e-07 57.0 39 64.1
CsaV3_3G049550 Cucumis sativus L. HOM05D000383 ORTHO05D001666 7.6e-07 57.0 39 64.1
DCAR_024980 Daucus carota HOM05D000383 ORTHO05D001666 7.6e-07 57.0 45 60.0
RhsimUnG0093600 Rhododendron simsii HOM05D000383 ORTHO05D001666 7.6e-07 57.0 32 75.0
Sed0009214 Sechium edule HOM05D000383 ORTHO05D001666 7.6e-07 57.0 39 64.1
CSS0012644 Camellia sinensis var. sinensis HOM05D000383 ORTHO05D001666 1.3e-06 56.2 32 75.0
PSO478G3108 Papaver somniferum HOM05D000383 ORTHO05D001666 1.3e-06 56.2 30 76.7
Psat0s4060g0160 Pisum sativum HOM05D001300 ORTHO05D007762 1.3e-06 56.2 35 65.7
Sopen08g003030 Solanum pennellii HOM05D000383 ORTHO05D001666 1.3e-06 56.2 32 75.0
MSTRG.25874 Avicennia marina HOM05D000383 ORTHO05D001666 1.7e-06 55.8 36 61.1
CANSAT21G0476 Cannabis sativa HOM05D000383 ORTHO05D001666 1.7e-06 55.8 35 65.7
CAN.G572.39 Capsicum annuum HOM05D000383 ORTHO05D001666 1.7e-06 55.8 32 71.9
Cfa012378 Carpinus fangiana HOM05D000383 ORTHO05D001666 1.7e-06 55.8 32 71.9
VMungo0331G0097 Vigna mungo HOM05D001300 ORTHO05D007762 1.7e-06 55.8 33 72.7
CAN.G845.30 Capsicum annuum HOM05D000383 ORTHO05D001666 2.9e-06 55.1 32 71.9
Cpa.g.sc8.86 Carica papaya HOM05D001300 ORTHO05D007762 2.9e-06 55.1 35 60.0
HanXRQChr17g0535741 Helianthus annuus HOM05D000383 ORTHO05D001666 2.9e-06 55.1 32 71.9
Lalb_Chr13g0291011 Lupinus albus HOM05D001300 ORTHO05D007762 2.9e-06 55.1 33 66.7
PGSC0003DMG400020497 Solanum tuberosum HOM05D000383 ORTHO05D001666 2.9e-06 55.1 32 71.9
HPP92_014866 Vanilla planifolia HOM05D000383 ORTHO05D001666 2.9e-06 55.1 38 63.2
DCAR_024979 Daucus carota HOM05D000383 ORTHO05D001666 3.8e-06 54.7 36 61.1
ECA246G1502 Erigeron canadensis HOM05D000383 ORTHO05D001666 3.8e-06 54.7 32 71.9
MD06G1041000 Malus domestica HOM05D000383 ORTHO05D001666 4.9e-06 54.3 40 60.0
PGR042G0977 Punica granatum HOM05D000383 ORTHO05D001666 4.9e-06 54.3 41 63.4


User provided reference genes

Program Settings