Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.57P81C Arachis hypogaea HOM05D006322 ORTHO05D007716 1.9e-130 469.2 230 100.0
arahy.Tifrunner.gnm1.ann1.WPA2XH Arachis hypogaea HOM05D006322 ORTHO05D007716 2.7e-129 465.3 230 99.1
Glyma.17G032700 Glycine max HOM05D006322 ORTHO05D007716 5.1e-104 381.3 230 80.0
Phvul.003G113400 Phaseolus vulgaris HOM05D006322 ORTHO05D007716 4.1e-101 371.7 230 77.0
VMungo1215G3118 Vigna mungo HOM05D006322 ORTHO05D007716 3.4e-100 368.6 230 76.1
Medtr4g121940 Medicago truncatula HOM05D006322 ORTHO05D007716 1.1e-98 363.6 227 77.1
Lj4g0019910 Lotus japonicus HOM05D006322 ORTHO05D007716 2.5e-98 362.5 230 77.0
Lalb_Chr13g0298441 Lupinus albus HOM05D006322 ORTHO05D007716 2.0e-95 352.8 221 76.0
Ca_21447_v3 Cicer arietinum L. HOM05D006322 ORTHO05D007716 6.3e-94 347.8 231 73.6
COL.COLO4_34636 Corchorus olitorius HOM05D006322 ORTHO05D007716 1.2e-89 333.6 226 69.9
Migut.N00046 Erythranthe guttata HOM05D006322 ORTHO05D007716 2.7e-89 332.4 215 69.8
Atru.chr4.3025 Acer truncatum HOM05D006322 ORTHO05D007716 4.7e-89 331.6 224 68.8
QL06p011774 Quercus lobata HOM05D006322 ORTHO05D007716 4.7e-89 331.6 223 69.5
Haze_01283 Corylus avellana HOM05D006322 ORTHO05D007716 8.0e-89 330.9 225 69.3
Peaxi162Scf00244g00413 Petunia axillaris HOM05D006322 ORTHO05D007716 8.0e-89 330.9 221 67.9
Oeu019970.1 Olea europaea HOM05D006322 ORTHO05D007716 1.8e-88 329.7 222 67.6
MSTRG.24817 Avicennia marina HOM05D006322 ORTHO05D007716 6.7e-88 327.8 223 67.3
CANSAT78G1173 Cannabis sativa HOM05D006322 ORTHO05D007716 6.7e-88 327.8 226 68.6
CiPaw.01G139400 Carya illinoinensis HOM05D006322 ORTHO05D007716 6.7e-88 327.8 215 71.2
Gohir.D09G235800 Gossypium hirsutum HOM05D006322 ORTHO05D007716 1.5e-87 326.6 218 71.1
Solyc11g007570.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 1.5e-87 326.6 216 67.1
TWI09G0431 Tripterygium wilfordii HOM05D006322 ORTHO05D007716 1.5e-87 326.6 218 71.6
Cfa015332 Carpinus fangiana HOM05D006322 ORTHO05D007716 3.3e-87 325.5 225 68.0
Manes.03G203000 Manihot esculenta HOM05D006322 ORTHO05D007716 4.4e-87 325.1 230 66.5
Thecc.04G298700 Theobroma cacao HOM05D006322 ORTHO05D007716 4.4e-87 325.1 226 68.1
Gohir.A09G235000 Gossypium hirsutum HOM05D006322 ORTHO05D007716 7.4e-87 324.3 218 70.6
Cc03_g00960 Coffea canephora HOM05D006322 ORTHO05D007716 9.7e-87 323.9 227 66.5
Gorai.006G258900 Gossypium raimondii HOM05D006322 ORTHO05D007716 1.3e-86 323.6 218 70.2
Sopen11g003410 Solanum pennellii HOM05D006322 ORTHO05D007716 1.3e-86 323.6 221 65.6
PGSC0003DMG400027315 Solanum tuberosum HOM05D006322 ORTHO05D007716 4.8e-86 321.6 212 67.5
FAN07G2163 Fragaria x ananassa HOM05D006322 ORTHO05D007716 1.4e-85 320.1 217 67.7
Actinidia40367 Actinidia chinensis HOM05D006322 ORTHO05D007716 3.1e-85 318.9 214 67.8
Duzib052G0456 Durio zibethinus HOM05D006322 ORTHO05D007716 3.1e-85 318.9 217 68.7
Nitab4.5_0001807g0060 Nicotiana tabacum HOM05D006322 ORTHO05D007716 3.1e-85 318.9 221 65.2
Duzib151G0960 Durio zibethinus HOM05D006322 ORTHO05D007716 5.3e-85 318.2 218 69.3
TAR636G2967 Trochodendron aralioides HOM05D006322 ORTHO05D007716 9.1e-85 317.4 213 68.1
HanXRQChr13g0395571 Helianthus annuus HOM05D006322 ORTHO05D007716 1.6e-84 316.6 224 66.1
RcHm_v2.0_Chr4g0424801 Rosa chinensis HOM05D006322 ORTHO05D007716 1.6e-84 316.6 214 66.8
Lsat_1_v5_gn_6_16821 Lactuca sativa HOM05D006322 ORTHO05D007716 2.0e-84 316.2 215 68.8
Eucgr.A00353 Eucalyptus grandis HOM05D006322 ORTHO05D007716 3.5e-84 315.5 225 65.8
Nitab4.5_0002259g0050 Nicotiana tabacum HOM05D006322 ORTHO05D007716 4.5e-84 315.1 221 64.7
SGA_v2.0_scaffold119G32659 Striga asiatica HOM05D006322 ORTHO05D007716 4.5e-84 315.1 216 66.2
Psat4g024200 Pisum sativum HOM05D006322 ORTHO05D007716 5.9e-84 314.7 217 69.1
Cpa.g.sc9.74 Carica papaya HOM05D006322 ORTHO05D007716 7.7e-84 314.3 225 66.2
Prupe.1G119400 Prunus persica HOM05D006322 ORTHO05D007716 7.7e-84 314.3 239 62.3
Ciclev10005751m.g Citrus clementina HOM05D006322 ORTHO05D007716 1.3e-83 313.5 235 66.0
Hma1.2p1_0078F.1_g040000 Hydrangea macrophylla HOM05D006322 ORTHO05D007716 2.9e-83 312.4 212 67.5
Psat4g024280 Pisum sativum HOM05D006322 ORTHO05D007716 2.9e-83 312.4 216 69.0
Lju470A16T21 Lonicera japonica HOM05D006322 ORTHO05D007716 5.0e-83 311.6 214 66.8
Aqoxy2G02768 Aquilegia oxysepala HOM05D006322 ORTHO05D007716 6.5e-83 311.2 210 69.5
ECA233G0552 Erigeron canadensis HOM05D006322 ORTHO05D007716 1.1e-82 310.5 217 65.4
MD16G1155500 Malus domestica HOM05D006322 ORTHO05D007716 3.2e-82 308.9 228 63.6
PGR031G3552 Punica granatum HOM05D006322 ORTHO05D007716 9.4e-82 307.4 211 65.9
GSVIVG01035010001 Vitis vinifera HOM05D006322 ORTHO05D007716 1.2e-81 307.0 202 70.8
Potri.008G106600 Populus trichocarpa HOM05D006322 ORTHO05D007716 2.7e-81 305.8 216 65.7
SalBow5G5236 Salvia bowleyana HOM05D006322 ORTHO05D007716 3.6e-81 305.4 221 62.0
Sabra08G0080400 Salix brachista HOM05D006322 ORTHO05D007716 6.1e-81 304.7 216 64.8
CSS0012053 Camellia sinensis var. sinensis HOM05D006322 ORTHO05D007716 1.0e-80 303.9 217 64.5
Sc25g0003310 Simmondsia chinensis HOM05D006322 ORTHO05D007716 1.0e-80 303.9 223 63.7
Dinv44297 Davidia involucrata HOM05D006322 ORTHO05D007716 8.8e-80 300.8 190 71.1
Nn3g21692 Nelumbo nucifera HOM05D006322 ORTHO05D007716 8.8e-80 300.8 213 66.2
EL10Ac3g05469 Beta vulgaris HOM05D006322 ORTHO05D007716 1.7e-78 296.6 218 64.7
vmacro08057 Vaccinium macrocarpon HOM05D006322 ORTHO05D007716 3.7e-78 295.4 225 62.2
PSO170G6693 Papaver somniferum HOM05D006322 ORTHO05D007716 1.8e-77 293.1 214 64.0
Rhsim04G0234900 Rhododendron simsii HOM05D006322 ORTHO05D007716 2.4e-77 292.7 229 60.3
BraA03t13148Z Brassica rapa HOM05D006322 ORTHO05D007716 4.1e-77 292.0 216 63.0
CsaV3_6G022370 Cucumis sativus L. HOM05D006322 ORTHO05D007716 5.3e-77 291.6 212 64.6
PSO357G0527 Papaver somniferum HOM05D006322 ORTHO05D007716 9.1e-77 290.8 215 62.3
MBI19_g07237_MAGBIO Magnolia biondii HOM05D006322 ORTHO05D007716 4.5e-76 288.5 225 62.2
A03p40000 Brassica napus HOM05D006322 ORTHO05D007716 7.7e-76 287.7 216 62.0
MELO3C021273.2 Cucumis melo HOM05D006322 ORTHO05D007716 6.5e-75 284.6 210 64.3
BcaB04g18916 Brassica carinata HOM05D006322 ORTHO05D007716 2.5e-74 282.7 221 60.2
BcaC01g03797 Brassica carinata HOM05D006322 ORTHO05D007716 2.5e-74 282.7 221 60.2
C03p48530 Brassica napus HOM05D006322 ORTHO05D007716 2.5e-74 282.7 221 60.2
BolC3t17131H Brassica oleracea HOM05D006322 ORTHO05D007716 2.5e-74 282.7 221 60.2
FAN12G2263 Fragaria x ananassa HOM05D006322 ORTHO05D007716 3.2e-74 282.3 201 65.7
Aa31LG8G4030 Aethionema arabicum HOM05D006322 ORTHO05D007716 5.5e-74 281.6 216 59.7
Carub.0003s1674 Capsella rubella HOM05D006322 ORTHO05D007716 1.6e-73 280.0 210 61.4
Hund11963 Selenicereus undatus HOM05D006322 ORTHO05D007716 1.6e-73 280.0 210 61.4
ClCG06G004620 Citrullus lanatus HOM05D006322 ORTHO05D007716 6.1e-73 278.1 210 61.4
AL3G29970 Arabidopsis lyrata HOM05D006322 ORTHO05D007716 1.4e-72 276.9 216 59.3
CARHR092240 Cardamine hirsuta HOM05D006322 ORTHO05D007716 1.4e-72 276.9 218 58.7
DCAR_027007 Daucus carota HOM05D006322 ORTHO05D007716 4.0e-72 275.4 284 48.2
Thhalv10021446m.g Eutrema salsugineum HOM05D006322 ORTHO05D007716 4.0e-72 275.4 227 57.7
Sed0017771 Sechium edule HOM05D006322 ORTHO05D007716 8.8e-72 274.2 210 60.5
AT3G16990 Arabidopsis thaliana HOM05D006322 ORTHO05D007716 4.4e-71 271.9 216 57.9
Sp3g15210 Schrenkiella parvula HOM05D006322 ORTHO05D007716 5.7e-71 271.6 212 58.5
CAN.G135.71 Capsicum annuum HOM05D006322 ORTHO05D007716 1.1e-69 267.3 172 68.6
ATR0796G257 Amborella trichopoda HOM05D006322 ORTHO05D007716 4.5e-68 261.9 219 55.7
HPP92_001241 Vanilla planifolia HOM05D006322 ORTHO05D007716 3.8e-67 258.8 213 56.3
Zm00001eb396140 Zea mays HOM05D006322 ORTHO05D007716 3.8e-67 258.8 211 57.3
Os03g0306900 Oryza sativa ssp. japonica HOM05D006322 ORTHO05D007716 1.5e-66 256.9 211 56.9
BcaB04g18918 Brassica carinata HOM05D006322 ORTHO05D007716 1.9e-66 256.5 221 56.6
DCAR_030477 Daucus carota HOM05D006322 ORTHO05D007716 4.2e-66 255.4 221 54.3
Peaxi162Scf00244g00510 Petunia axillaris HOM05D006322 ORTHO05D007716 1.5e-63 246.9 223 52.5
SHI00180 Sapria himalayana HOM05D006322 ORTHO05D007716 2.0e-63 246.5 257 48.6
AUR62016124 Chenopodium quinoa HOM05D006322 ORTHO05D007716 5.7e-63 245.0 173 66.5
FvH4_4g19550 Fragaria vesca HOM05D006322 ORTHO05D007716 2.2e-62 243.0 174 64.9
AUR62041396 Chenopodium quinoa HOM05D006322 ORTHO05D007716 2.8e-62 242.7 172 66.3
TPR.G20694 Trifolium pratense HOM05D006322 ORTHO05D007716 3.5e-60 235.7 157 71.3
SEGI_24166 Sequoiadendron giganteum HOM05D006322 ORTHO05D007716 1.0e-59 234.2 212 53.8
Solyc11g007560.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 1.3e-59 233.8 218 50.9
THA.LOC104802603 Tarenaya hassleriana HOM05D006322 ORTHO05D007716 5.0e-59 231.9 172 61.0
CAN.G135.72 Capsicum annuum HOM05D006322 ORTHO05D007716 6.6e-59 231.5 231 49.8
Actinidia27045 Actinidia chinensis HOM05D006322 ORTHO05D007716 9.5e-58 227.6 152 69.1
Ah.13g071980 Amaranthus hybridus HOM05D006322 ORTHO05D007716 5.8e-55 218.4 209 53.1
Lalb_Chr20g0120881 Lupinus albus HOM05D006322 ORTHO05D007716 6.0e-52 208.4 141 70.2
Nitab4.5_0001807g0070 Nicotiana tabacum HOM05D006322 ORTHO05D007716 1.3e-51 207.2 214 46.7
Mapoly0003s0261 Marchantia polymorpha HOM05D006322 ORTHO05D007716 6.6e-51 204.9 218 44.5
SMO116G0484 Selaginella moellendorffii HOM05D006322 ORTHO05D007716 3.3e-50 202.6 210 46.2
AagrBONN_evm.TU.Sc2ySwM_117.1930 Anthoceros agrestis HOM05D006322 ORTHO05D007716 4.3e-50 202.2 212 46.2
TAR362G0340 Trochodendron aralioides HOM05D006322 ORTHO05D007716 7.3e-50 201.4 213 46.5
Pp3c10_15580 Physcomitrium patens HOM05D006322 ORTHO05D007716 2.6e-47 193.0 211 46.0
EL10Ac7g16563 Beta vulgaris HOM05D006322 ORTHO05D007716 1.3e-46 190.7 155 60.0
BcaB04g18915 Brassica carinata HOM05D001503 ORTHO05D003820 4.1e-45 185.7 164 56.1
PGSC0003DMG400040588 Solanum tuberosum HOM05D006322 ORTHO05D007716 1.2e-41 174.1 161 54.0
Actinidia15599 Actinidia chinensis HOM05D006322 ORTHO05D007716 1.4e-37 160.6 112 64.3
Glyma.07G240701 Glycine max HOM05D006322 ORTHO05D007716 2.5e-34 149.8 115 67.0
CBR_g45493 Chara braunii HOM05D006322 ORTHO05D007716 1.4e-29 134.0 220 32.3
Atru.chr4.3023 Acer truncatum HOM05D006322 ORTHO05D007716 8.7e-27 124.8 82 67.1
Cre09.g407600 Chlamydomonas reinhardtii HOM05D006322 ORTHO05D007716 3.8e-22 109.4 217 32.3
EL10Ac9g22265 Beta vulgaris HOM05D006322 ORTHO05D007716 8.4e-22 108.2 95 56.8
CANSAT54G0480 Cannabis sativa HOM05D006322 ORTHO05D007716 1.4e-13 80.9 73 49.3
Lalb_Chr20g0120891 Lupinus albus HOM05D006322 ORTHO05D007716 1.4e-13 80.9 54 68.5
EL10Ac1g02106 Beta vulgaris HOM05D006322 ORTHO05D007716 7.9e-12 75.1 53 64.2
CBR_g56708 Chara braunii HOM05D009436 ORTHO05D000048 1.8e-11 73.9 119 32.8
Atru.chr4.2979 Acer truncatum HOM05D006322 ORTHO05D007716 6.7e-11 72.0 43 67.4
BcaB04g18920 Brassica carinata HOM05D006322 ORTHO05D007716 1.1e-10 71.2 54 55.6
PSO782G2289 Papaver somniferum HOM05D000256 ORTHO05D000119 9.0e-08 61.6 56 48.2


User provided reference genes

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