Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 4.8e-76 287.7 143 100.0
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 4.8e-76 287.7 143 100.0
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 2.8e-36 155.6 142 62.7
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 1.4e-35 153.3 150 60.0
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 2.0e-34 149.4 148 58.8
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 4.5e-34 148.3 139 59.0
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 6.6e-33 144.4 143 60.1
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 9.5e-32 140.6 144 57.6
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 2.1e-31 139.4 148 58.8
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 2.8e-31 139.0 130 62.3
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 1.4e-30 136.7 148 58.1
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 3.0e-30 135.6 132 58.3
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 4.0e-30 135.2 132 54.5
Psat3g097280 Pisum sativum HOM05D004062 ORTHO05D004417 2.0e-29 132.9 145 56.6
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 4.4e-29 131.7 154 56.5
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 5.8e-29 131.3 132 60.6
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 9.8e-29 130.6 132 59.8
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 5.4e-27 124.8 131 55.7
Medtr7g082750 Medicago truncatula HOM05D004062 ORTHO05D004417 5.4e-27 124.8 143 55.2
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 9.2e-27 124.0 132 53.0
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 1.6e-26 123.2 127 56.7
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 2.0e-26 122.9 129 59.7
Lalb_Chr04g0257671 Lupinus albus HOM05D004062 ORTHO05D004417 6.0e-26 121.3 145 54.5
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 6.0e-26 121.3 126 51.6
arahy.Tifrunner.gnm1.ann1.95RUG0 Arachis hypogaea HOM05D004062 ORTHO05D004417 5.6e-24 114.8 142 54.9
arahy.Tifrunner.gnm1.ann1.EB5M6E Arachis hypogaea HOM05D004062 ORTHO05D004417 5.6e-24 114.8 142 54.9
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 1.6e-23 113.2 122 51.6
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 2.1e-23 112.8 127 52.8
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 3.6e-23 112.1 128 48.4
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 3.6e-23 112.1 125 48.8
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 3.6e-23 112.1 128 47.7
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 6.2e-23 111.3 125 56.0
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 8.0e-23 110.9 132 54.5
Ca_08097_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 1.4e-22 110.2 143 51.7
TPR.G16541 Trifolium pratense HOM05D004062 ORTHO05D004417 1.4e-22 110.2 147 51.7
Psat3g097240 Pisum sativum HOM05D004062 ORTHO05D004417 2.3e-22 109.4 143 51.7
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.3e-22 109.4 124 51.6
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 8.9e-22 107.5 125 52.8
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 8.9e-22 107.5 124 47.6
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 8.9e-22 107.5 133 53.4
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 1.2e-21 107.1 127 46.5
TPR.G11392 Trifolium pratense HOM05D004062 ORTHO05D004417 1.2e-21 107.1 131 51.9
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 2.0e-21 106.3 124 48.4
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 9.8e-21 104.0 125 49.6
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.7e-20 103.2 131 45.8
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 6.4e-20 101.3 124 48.4
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.4e-19 100.1 124 48.4
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.9e-19 99.8 135 46.7
Medtr7g082760 Medicago truncatula HOM05D004062 ORTHO05D004417 2.4e-19 99.4 146 47.9
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 3.2e-19 99.0 124 47.6
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 3.2e-19 99.0 126 50.8
Lj1g0018189 Lotus japonicus HOM05D004062 ORTHO05D004417 7.0e-19 97.8 147 47.6
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.2e-18 97.1 127 49.6
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 1.6e-18 96.7 122 42.6
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 4.6e-18 95.1 127 47.2
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 7.8e-18 94.4 136 43.4
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 7.8e-18 94.4 136 43.4
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 1.7e-17 93.2 135 44.4
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 3.0e-17 92.4 132 41.7
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 1.1e-16 90.5 124 47.6
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.5e-16 90.1 136 44.1
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.9e-16 89.7 128 42.2
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 3.3e-16 89.0 119 47.9
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 3.3e-16 89.0 123 41.5
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 3.3e-16 89.0 123 41.5
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 4.3e-16 88.6 124 41.9
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 5.6e-16 88.2 123 44.7
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 5.6e-16 88.2 135 39.3
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 7.3e-16 87.8 125 43.2
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 7.3e-16 87.8 127 44.1
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 9.5e-16 87.4 133 42.9
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 1.6e-15 86.7 119 45.4
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 1.6e-15 86.7 126 44.4
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.8e-15 85.9 142 39.4
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 6.2e-15 84.7 130 44.6
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 8.1e-15 84.3 124 42.7
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 2.3e-14 82.8 124 41.9
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 3.1e-14 82.4 92 51.1
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 4.0e-14 82.0 134 44.0
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 5.2e-14 81.6 124 42.7
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 8.9e-14 80.9 128 46.1
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 8.9e-14 80.9 94 48.9
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 5.8e-13 78.2 128 39.8
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 9.9e-13 77.4 124 39.5
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 1.3e-12 77.0 118 39.8
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 1.7e-12 76.6 129 39.5
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 2.2e-12 76.3 128 37.5
CiPaw.05G243400 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.9e-12 75.9 132 37.1
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 3.7e-12 75.5 93 47.3
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 3.7e-12 75.5 93 47.3
Ciclev10017837m.g Citrus clementina HOM05D004062 ORTHO05D004417 4.9e-12 75.1 134 40.3
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 4.9e-12 75.1 123 43.9
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 4.9e-12 75.1 123 42.3
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 8.3e-12 74.3 126 40.5
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 1.1e-11 73.9 122 45.9
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.4e-11 73.6 122 41.0
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 1.4e-11 73.6 126 40.5
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 2.4e-11 72.8 119 42.9
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.2e-11 72.4 134 38.1
PGR102G0077 Punica granatum HOM05D004062 ORTHO05D004417 7.1e-11 71.2 142 35.9
Ciclev10017934m.g Citrus clementina HOM05D004062 ORTHO05D004417 9.2e-11 70.9 131 38.9
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 9.2e-11 70.9 125 39.2
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.6e-10 70.1 132 35.6
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.6e-10 70.1 137 38.0
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.6e-10 70.1 134 37.3
Atru.chr11.263 Acer truncatum HOM05D004062 ORTHO05D004417 2.1e-10 69.7 125 39.2
Atru.chr11.283 Acer truncatum HOM05D004062 ORTHO05D004417 2.1e-10 69.7 125 39.2
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 2.1e-10 69.7 137 38.7
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 2.7e-10 69.3 137 37.2
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 2.7e-10 69.3 126 38.9
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 2.7e-10 69.3 137 37.2
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.7e-10 69.3 137 37.2
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.7e-10 69.3 138 37.7
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.5e-10 68.9 138 37.7
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 4.6e-10 68.6 125 36.8
Dinv31584 Davidia involucrata HOM05D004062 ORTHO05D004417 6.0e-10 68.2 103 42.7
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 1.0e-09 67.4 134 38.8
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 1.0e-09 67.4 127 40.2
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.0e-09 67.4 138 37.0
Ciclev10017483m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.3e-09 67.0 128 33.6
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 1.3e-09 67.0 121 39.7
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 1.3e-09 67.0 131 38.2
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 2.3e-09 66.2 127 37.0
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 2.3e-09 66.2 134 37.3
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 3.0e-09 65.9 129 37.2
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 3.0e-09 65.9 135 36.3
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 3.9e-09 65.5 114 38.6
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 5.1e-09 65.1 135 34.1
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.1e-08 63.9 127 35.4
Os05g0576600 Oryza sativa ssp. japonica HOM05D025274 ORTHO05D026015 1.5e-08 63.5 139 35.3
ClCG01G005940 Citrullus lanatus HOM05D004062 ORTHO05D004417 1.9e-08 63.2 120 40.8
DCAR_010709 Daucus carota HOM05D004062 ORTHO05D004417 4.3e-08 62.0 142 34.5
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.3e-08 62.0 145 33.8
Hma1.2p1_0767F.1_g215470 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 4.3e-08 62.0 124 37.9
Manes.14G107900 Manihot esculenta HOM05D004062 ORTHO05D004417 5.6e-08 61.6 127 33.9
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 9.5e-08 60.8 130 40.8
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 9.5e-08 60.8 129 34.1
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 9.5e-08 60.8 145 33.1
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 1.2e-07 60.5 145 33.1
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.2e-07 60.5 145 33.1
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 1.2e-07 60.5 136 34.6
HPP92_009718 Vanilla planifolia HOM05D004062 ORTHO05D004417 1.2e-07 60.5 137 35.8
Eucgr.G02232 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.6e-07 60.1 129 31.0
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.6e-07 60.1 145 33.1
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.6e-07 60.1 139 33.8
Medtr3g100640 Medicago truncatula HOM05D004062 ORTHO05D004417 1.6e-07 60.1 76 48.7
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 2.1e-07 59.7 129 32.6
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.8e-07 59.3 144 32.6
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.8e-07 59.3 139 33.8
CDE10G0393 Ceratophyllum demersum HOM05D004062 ORTHO05D004417 3.6e-07 58.9 124 33.1
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 3.6e-07 58.9 138 30.4
MELO3C005337.2 Cucumis melo HOM05D004062 ORTHO05D004417 8.1e-07 57.8 120 36.7
FAN22G1944 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.4e-06 56.2 136 30.1
SGA_v2.0_scaffold334G49044 Striga asiatica HOM05D003529 ORTHO05D004106 2.4e-06 56.2 130 34.6
AUR62023219 Chenopodium quinoa HOM05D004062 ORTHO05D004417 5.2e-06 55.1 100 33.0
AUR62044612 Chenopodium quinoa HOM05D004062 ORTHO05D004417 5.2e-06 55.1 100 33.0
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 6.8e-06 54.7 120 37.5
Nn3g21602 Nelumbo nucifera HOM05D003529 ORTHO05D004106 8.9e-06 54.3 131 33.6
Zm00001eb296670 Zea mays HOM05D025274 ORTHO05D026015 8.9e-06 54.3 137 29.9


User provided reference genes

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