Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.55UCKQ Arachis hypogaea HOM05D050568 ORTHO05D007223 2.0e-239 832.4 558 100.0
arahy.Tifrunner.gnm1.ann1.EQ7BWL Arachis hypogaea HOM05D050568 ORTHO05D087656 7.5e-24 116.3 75 74.7
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 1.5e-16 92.0 75 65.3
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 7.5e-16 89.7 73 64.4
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 7.5e-16 89.7 73 64.4
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 6.3e-15 86.7 73 64.4
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 7.7e-13 79.7 83 49.4
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 1.1e-11 75.9 73 52.1
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 1.1e-11 75.9 73 52.1
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 1.1e-11 75.9 73 50.7
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 1.1e-11 75.9 73 75.3
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 2.5e-11 74.7 73 50.7
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 3.3e-11 74.3 97 44.3
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 7.3e-11 73.2 73 50.7
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 7.3e-11 73.2 73 50.7
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 2.1e-10 71.6 69 60.9
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 4.7e-10 70.5 75 46.7
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 6.1e-10 70.1 75 46.7
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 8.9e-09 66.2 72 45.8
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 1.2e-08 65.9 73 43.8
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 2.0e-08 65.1 69 47.8
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 2.0e-08 65.1 69 47.8
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 2.6e-08 64.7 81 38.3
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 3.4e-08 64.3 73 46.6
FAN13G0094 Fragaria x ananassa HOM05D002264 ORTHO05D002413 3.4e-08 64.3 62 59.7
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 4.4e-08 63.9 73 42.5
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 7.5e-08 63.2 73 41.1
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 7.5e-08 63.2 73 42.5
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 7.5e-08 63.2 73 42.5
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 9.8e-08 62.8 73 39.7
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 1.7e-07 62.0 72 47.2
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 1.7e-07 62.0 72 41.7
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 2.2e-07 61.6 81 38.3
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 2.2e-07 61.6 73 41.1
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 2.2e-07 61.6 73 41.1
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 2.2e-07 61.6 72 47.2
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 2.2e-07 61.6 66 48.5
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 2.9e-07 61.2 73 42.5
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 3.7e-07 60.8 73 39.7
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 3.7e-07 60.8 73 39.7
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 4.9e-07 60.5 79 40.5
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 4.9e-07 60.5 72 43.1
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 4.9e-07 60.5 72 43.1
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 4.9e-07 60.5 71 47.9
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 4.9e-07 60.5 71 47.9
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 6.4e-07 60.1 38 73.7
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 6.4e-07 60.1 117 32.5
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 6.4e-07 60.1 72 45.8
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 8.3e-07 59.7 77 37.7
Ah.05g177070 Amaranthus hybridus HOM05D002264 ORTHO05D002413 1.1e-06 59.3 75 48.0
FvH4_5g18511 Fragaria vesca HOM05D002264 ORTHO05D002413 1.1e-06 59.3 75 49.3
FAN04G0905 Fragaria x ananassa HOM05D002264 ORTHO05D002413 1.1e-06 59.3 75 49.3
FAN18G1447 Fragaria x ananassa HOM05D002264 ORTHO05D000427 1.1e-06 59.3 75 49.3
Glyma.11G113901 Glycine max HOM05D002264 ORTHO05D002413 1.4e-06 58.9 78 48.7
Glyma.11G114001 Glycine max HOM05D002264 ORTHO05D002413 1.4e-06 58.9 78 48.7
Glyma.12G039900 Glycine max HOM05D002264 ORTHO05D002413 1.4e-06 58.9 78 48.7
Phvul.011G041900 Phaseolus vulgaris HOM05D002264 ORTHO05D002413 1.4e-06 58.9 78 48.7
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 1.4e-06 58.9 73 42.5
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 1.4e-06 58.9 73 42.5
VMungo1127G1041 Vigna mungo HOM05D002264 ORTHO05D002413 1.4e-06 58.9 78 48.7
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.8e-06 58.5 73 39.7
EL10Ac1g00650 Beta vulgaris HOM05D002264 ORTHO05D002413 1.8e-06 58.5 75 46.7
A02p18630 Brassica napus HOM05D002264 ORTHO05D002413 1.8e-06 58.5 97 42.3
BraA02t06906Z Brassica rapa HOM05D002264 ORTHO05D002413 1.8e-06 58.5 97 42.3
CANSAT01G0219 Cannabis sativa HOM05D002264 ORTHO05D002413 1.8e-06 58.5 77 48.1
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.8e-06 58.5 73 39.7
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.8e-06 58.5 72 41.7
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 1.8e-06 58.5 73 41.1
Medtr4g071000 Medicago truncatula HOM05D002264 ORTHO05D002413 1.8e-06 58.5 85 42.4
Nitab4.5_0000018g0100 Nicotiana tabacum HOM05D002264 ORTHO05D002413 1.8e-06 58.5 57 57.9
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 1.8e-06 58.5 90 37.8
Sp5g28200 Schrenkiella parvula HOM05D002264 ORTHO05D002413 1.8e-06 58.5 85 44.7
Sc02g0003410 Simmondsia chinensis HOM05D002264 ORTHO05D002413 1.8e-06 58.5 75 48.0
HPP92_025314 Vanilla planifolia HOM05D002264 ORTHO05D002413 1.8e-06 58.5 78 47.4
arahy.Tifrunner.gnm1.ann1.88ZCTY Arachis hypogaea HOM05D002264 ORTHO05D002413 2.4e-06 58.2 74 50.0
arahy.Tifrunner.gnm1.ann1.913R4E Arachis hypogaea HOM05D002264 ORTHO05D002413 2.4e-06 58.2 74 50.0
CAN.G491.10 Capsicum annuum HOM05D002264 ORTHO05D002413 2.4e-06 58.2 58 56.9
CAN.G491.11 Capsicum annuum HOM05D002264 ORTHO05D002413 2.4e-06 58.2 58 56.9
AUR62014503 Chenopodium quinoa HOM05D002264 ORTHO05D002413 2.4e-06 58.2 76 46.1
Ciclev10022594m.g Citrus clementina HOM05D002264 ORTHO05D002413 2.4e-06 58.2 75 48.0
Cc00_g05120 Coffea canephora HOM05D002264 ORTHO05D002413 2.4e-06 58.2 57 57.9
DCAR_015290 Daucus carota HOM05D002264 ORTHO05D002413 2.4e-06 58.2 78 46.2
Lj3g0008136 Lotus japonicus HOM05D002264 ORTHO05D002413 2.4e-06 58.2 74 50.0
Lj3g0018402 Lotus japonicus HOM05D002264 ORTHO05D002413 2.4e-06 58.2 74 50.0
Lalb_Chr01g0002281 Lupinus albus HOM05D002264 ORTHO05D002413 2.4e-06 58.2 74 50.0
Lalb_Chr01g0002301 Lupinus albus HOM05D002264 ORTHO05D002413 2.4e-06 58.2 74 50.0
Lalb_Chr03g0025481 Lupinus albus HOM05D002264 ORTHO05D002413 2.4e-06 58.2 74 50.0
Lalb_Chr19g0138831 Lupinus albus HOM05D002264 ORTHO05D002413 2.4e-06 58.2 74 50.0
Manes.08G059700 Manihot esculenta HOM05D002264 ORTHO05D002413 2.4e-06 58.2 93 40.9
Medtr3g020660 Medicago truncatula HOM05D002264 ORTHO05D002413 2.4e-06 58.2 74 50.0
Peaxi162Scf01038g00142 Petunia axillaris HOM05D002264 ORTHO05D002413 2.4e-06 58.2 58 56.9
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 2.4e-06 58.2 72 44.4
Phvul.005G031400 Phaseolus vulgaris HOM05D002264 ORTHO05D002413 2.4e-06 58.2 74 50.0
Solyc07g008720.4 Solanum lycopersicum HOM05D002264 ORTHO05D002413 2.4e-06 58.2 57 57.9
Solyc09g010330.4 Solanum lycopersicum HOM05D002264 ORTHO05D002413 2.4e-06 58.2 57 57.9
Sopen07g004640 Solanum pennellii HOM05D002264 ORTHO05D002413 2.4e-06 58.2 57 57.9
Sopen09g005060 Solanum pennellii HOM05D002264 ORTHO05D002413 2.4e-06 58.2 57 57.9
PGSC0003DMG400028726 Solanum tuberosum HOM05D002264 ORTHO05D002413 2.4e-06 58.2 57 57.9
THA.LOC104810634 Tarenaya hassleriana HOM05D002264 ORTHO05D002413 2.4e-06 58.2 78 46.2
VMungo1080G0758 Vigna mungo HOM05D002264 ORTHO05D002413 2.4e-06 58.2 74 50.0
AL2G33000 Arabidopsis lyrata HOM05D002264 ORTHO05D002413 3.2e-06 57.8 93 41.9
AT1G73230 Arabidopsis thaliana HOM05D002264 ORTHO05D002413 3.2e-06 57.8 93 41.9
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 3.2e-06 57.8 73 41.1
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 3.2e-06 57.8 73 38.4
Sc26g0002040 Simmondsia chinensis HOM05D002264 ORTHO05D002413 3.2e-06 57.8 75 46.7
MD14G1246300 Malus domestica HOM05D002264 ORTHO05D002413 4.1e-06 57.4 75 48.0
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 4.1e-06 57.4 73 41.1
Hund26912 Selenicereus undatus HOM05D002264 ORTHO05D002413 4.1e-06 57.4 75 46.7
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 4.1e-06 57.4 74 48.6
THA.LOC104812193 Tarenaya hassleriana HOM05D002264 ORTHO05D002413 4.1e-06 57.4 74 48.6
TPR.G8957 Trifolium pratense HOM05D002264 ORTHO05D002413 4.1e-06 57.4 74 48.6
vmacro10389 Vaccinium macrocarpon HOM05D002264 ORTHO05D002413 4.1e-06 57.4 85 42.4
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 5.4e-06 57.0 91 35.2
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 5.4e-06 57.0 91 35.2
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 5.4e-06 57.0 84 39.3
MSTRG.23456 Avicennia marina HOM05D002264 ORTHO05D002413 5.4e-06 57.0 58 56.9
C06p47370 Brassica napus HOM05D002264 ORTHO05D002413 5.4e-06 57.0 89 44.9
BolC6t39776H Brassica oleracea HOM05D002264 ORTHO05D002413 5.4e-06 57.0 89 44.9
Carub.0001s1761 Capsella rubella HOM05D002264 ORTHO05D002413 5.4e-06 57.0 85 42.4
Carub.0002s2003 Capsella rubella HOM05D002264 ORTHO05D002413 5.4e-06 57.0 74 48.6
CARHR066240 Cardamine hirsuta HOM05D002264 ORTHO05D002413 5.4e-06 57.0 74 48.6
Cpa.g.c34143 Carica papaya HOM05D002264 ORTHO05D002413 5.4e-06 57.0 74 48.6
Cpa.g.sc103.104 Carica papaya HOM05D002264 ORTHO05D002413 5.4e-06 57.0 74 48.6
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 5.4e-06 57.0 70 38.6
MD06G1239900 Malus domestica HOM05D002264 ORTHO05D002413 5.4e-06 57.0 74 48.6
Nitab4.5_0005025g0020 Nicotiana tabacum HOM05D002264 ORTHO05D002413 5.4e-06 57.0 55 58.2
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 5.4e-06 57.0 71 39.4
Prupe.5G244600 Prunus persica HOM05D002264 ORTHO05D002413 5.4e-06 57.0 74 48.6
SalBow3G3373 Salvia bowleyana HOM05D002264 ORTHO05D002413 5.4e-06 57.0 58 56.9
Sp1g15970 Schrenkiella parvula HOM05D002264 ORTHO05D002413 5.4e-06 57.0 85 42.4
THA.LOC104813936 Tarenaya hassleriana HOM05D002264 ORTHO05D002413 5.4e-06 57.0 74 48.6
TPR.G30503 Trifolium pratense HOM05D002264 ORTHO05D002413 5.4e-06 57.0 74 48.6
Actinidia34768 Actinidia chinensis HOM05D002264 ORTHO05D002413 7.0e-06 56.6 74 47.3
Actinidia38921 Actinidia chinensis HOM05D002264 ORTHO05D002413 7.0e-06 56.6 74 47.3
MSTRG.23458 Avicennia marina HOM05D002264 ORTHO05D002413 7.0e-06 56.6 54 59.3
BcaB03g15035 Brassica carinata HOM05D002264 ORTHO05D002413 7.0e-06 56.6 89 43.8
CSS0013342 Camellia sinensis var. sinensis HOM05D002264 ORTHO05D002413 7.0e-06 56.6 74 47.3
CARHR018490 Cardamine hirsuta HOM05D002264 ORTHO05D002413 7.0e-06 56.6 75 46.7
MELO3C002159.2 Cucumis melo HOM05D002264 ORTHO05D002413 7.0e-06 56.6 74 47.3
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 7.0e-06 56.6 73 38.4
DCAR_015291 Daucus carota HOM05D002264 ORTHO05D002413 7.0e-06 56.6 74 47.3
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 7.0e-06 56.6 72 40.3
Migut.H00723 Erythranthe guttata HOM05D002264 ORTHO05D002413 7.0e-06 56.6 54 59.3
Eucgr.H00618 Eucalyptus grandis HOM05D002264 ORTHO05D002413 7.0e-06 56.6 78 44.9
Lsat_1_v5_gn_5_158540 Lactuca sativa HOM05D002264 ORTHO05D002413 7.0e-06 56.6 77 46.8
MBI03_g22262_MAGBIO Magnolia biondii HOM05D002264 ORTHO05D002413 7.0e-06 56.6 74 47.3
SalBow1G2134 Salvia bowleyana HOM05D002264 ORTHO05D002413 7.0e-06 56.6 54 59.3
Sed0018207 Sechium edule HOM05D002264 ORTHO05D002413 7.0e-06 56.6 78 47.4
PGSC0003DMG400008855 Solanum tuberosum HOM05D002264 ORTHO05D002413 7.0e-06 56.6 57 56.1
HPP92_007014 Vanilla planifolia HOM05D002264 ORTHO05D002413 7.0e-06 56.6 78 46.2
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 7.0e-06 56.6 73 37.0
Aa31LG7G2450 Aethionema arabicum HOM05D002264 ORTHO05D002413 9.2e-06 56.2 74 47.3
Aa31LG7G2690 Aethionema arabicum HOM05D002264 ORTHO05D002413 9.2e-06 56.2 74 47.3
BcaC08g46741 Brassica carinata HOM05D002264 ORTHO05D002413 9.2e-06 56.2 79 48.1
C02p30860 Brassica napus HOM05D002264 ORTHO05D002413 9.2e-06 56.2 89 43.8
CiPaw.03G008700 Carya illinoinensis HOM05D002264 ORTHO05D002413 9.2e-06 56.2 77 46.8
Ca_20908_v3 Cicer arietinum L. HOM05D002264 ORTHO05D002413 9.2e-06 56.2 74 48.6
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 9.2e-06 56.2 72 40.3
Gohir.A11G256600 Gossypium hirsutum HOM05D002264 ORTHO05D002413 9.2e-06 56.2 74 47.3
Gohir.D08G248300 Gossypium hirsutum HOM05D002264 ORTHO05D002413 9.2e-06 56.2 78 46.2
Gohir.D11G266400 Gossypium hirsutum HOM05D002264 ORTHO05D002413 9.2e-06 56.2 74 47.3
Gorai.004G264900 Gossypium raimondii HOM05D002264 ORTHO05D002413 9.2e-06 56.2 78 46.2
Gorai.007G286300 Gossypium raimondii HOM05D002264 ORTHO05D002413 9.2e-06 56.2 74 47.3
MBI06_g19435_MAGBIO Magnolia biondii HOM05D002264 ORTHO05D002413 9.2e-06 56.2 74 45.9
Pp3c9_3350 Physcomitrium patens HOM05D002264 ORTHO05D002413 9.2e-06 56.2 82 45.1
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 9.2e-06 56.2 72 41.7
Zm00001eb045530 Zea mays HOM05D002264 ORTHO05D002413 9.2e-06 56.2 78 46.2


User provided reference genes

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