Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 1.3e-233 812.8 422 100.0
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 1.3e-233 812.8 422 100.0
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 5.0e-198 694.5 462 79.9
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 5.6e-197 691.0 460 79.8
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 1.8e-195 686.0 460 78.7
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 2.0e-194 682.6 460 79.6
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 7.5e-194 680.6 459 78.6
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 1.7e-193 679.5 460 78.5
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 2.9e-193 678.7 454 79.5
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 3.2e-192 675.2 460 78.5
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 7.0e-192 674.1 455 77.4
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 2.3e-190 669.1 422 81.5
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 2.1e-188 662.5 459 75.4
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 6.2e-188 661.0 458 76.4
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 4.6e-183 644.8 458 74.5
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 3.9e-182 641.7 458 75.1
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 5.0e-182 641.3 459 73.2
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 1.9e-181 639.4 458 73.8
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 2.5e-181 639.0 459 73.2
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 4.7e-180 634.8 460 73.3
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 6.2e-180 634.4 460 73.0
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 1.4e-179 633.3 458 73.1
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 1.4e-179 633.3 459 73.0
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.3e-179 632.5 459 72.1
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 6.8e-179 630.9 459 73.0
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 8.9e-179 630.6 459 72.1
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 3.4e-178 628.6 459 73.4
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 3.4e-178 628.6 460 72.0
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 3.2e-176 622.1 394 81.2
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 4.1e-176 621.7 460 72.4
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 2.7e-175 619.0 459 71.5
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 3.0e-174 615.5 461 71.8
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 5.1e-174 614.8 461 71.4
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 5.1e-174 614.8 460 71.1
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 8.6e-174 614.0 462 69.9
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.5e-173 613.2 459 70.6
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 3.3e-173 612.1 461 70.9
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 4.3e-173 611.7 460 70.4
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 1.4e-171 606.7 459 69.1
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 1.4e-171 606.7 461 70.5
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 2.4e-171 605.9 459 69.5
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 4.0e-171 605.1 462 69.7
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 4.0e-171 605.1 459 69.9
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 1.5e-170 603.2 461 70.3
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 3.4e-170 602.1 459 69.1
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.4e-170 601.7 459 68.8
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 5.8e-170 601.3 460 70.4
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 1.7e-169 599.7 459 69.5
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 2.2e-169 599.4 460 69.8
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 1.4e-168 596.7 458 68.1
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 4.1e-168 595.1 461 68.1
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.1e-168 595.1 458 68.3
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 9.2e-168 594.0 461 69.6
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 1.2e-167 593.6 437 72.1
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 2.1e-167 592.8 460 68.9
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 1.7e-166 589.7 459 68.2
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 2.3e-166 589.3 460 68.5
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 5.1e-166 588.2 460 68.3
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 1.1e-165 587.0 460 68.5
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 1.9e-165 586.3 460 68.0
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 2.5e-165 585.9 460 67.6
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 2.5e-165 585.9 464 68.5
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 3.3e-165 585.5 460 67.0
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 7.3e-165 584.3 459 68.0
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 1.6e-164 583.2 459 68.0
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 8.1e-164 580.9 459 67.5
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 9.9e-162 573.9 465 67.1
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 9.9e-162 573.9 465 67.1
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 9.9e-162 573.9 460 66.3
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 2.2e-161 572.8 459 67.1
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 8.4e-161 570.9 460 67.2
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 1.9e-160 569.7 459 66.9
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 2.7e-159 565.8 461 66.8
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 6.0e-159 564.7 461 66.8
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 1.7e-158 563.1 386 74.4
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 8.7e-158 560.8 388 75.0
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 1.3e-156 557.0 426 70.0
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 1.6e-156 556.6 490 63.5
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 3.6e-156 555.4 386 73.8
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 1.1e-155 553.9 474 62.9
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 2.4e-155 552.7 482 62.7
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.0e-155 552.0 548 57.8
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 5.3e-155 551.6 460 65.7
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 6.9e-155 551.2 456 65.6
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 3.4e-154 548.9 461 64.6
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 1.3e-153 547.0 388 73.5
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 1.7e-153 546.6 456 65.1
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 2.2e-153 546.2 456 65.1
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 2.2e-153 546.2 459 65.6
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 2.9e-153 545.8 456 64.9
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 1.9e-152 543.1 426 68.1
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 2.4e-152 542.7 466 63.9
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.2e-152 542.3 459 65.1
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 2.1e-151 539.7 459 63.4
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.6e-151 538.5 459 64.5
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 1.0e-150 537.3 429 67.4
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 8.7e-150 534.3 387 71.6
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 8.7e-150 534.3 459 63.0
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 2.5e-149 532.7 461 62.3
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 9.6e-149 530.8 387 71.1
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 2.8e-148 529.3 458 62.2
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.4e-147 526.9 459 61.7
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 1.2e-143 513.8 459 61.4
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 4.3e-141 505.4 460 59.6
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 1.8e-139 500.0 460 60.0
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 3.2e-136 489.2 398 66.1
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 3.3e-133 479.2 458 59.4
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.1e-131 474.2 466 55.8
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 4.5e-130 468.8 458 59.2
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 5.9e-130 468.4 458 56.1
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 7.6e-130 468.0 382 65.4
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 9.3e-128 461.1 497 54.9
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 1.5e-114 417.2 363 61.7
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.5e-114 415.6 405 56.3
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 3.8e-113 412.5 459 49.2
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 3.0e-102 376.3 329 61.1
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 1.6e-95 354.0 326 62.3
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 2.8e-92 343.2 459 41.2
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 1.5e-77 294.3 239 64.9
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.6e-69 266.9 361 44.0
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 1.1e-64 251.5 389 39.1
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.9e-60 236.1 242 56.2
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 6.0e-58 229.2 189 68.8
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 3.2e-51 206.8 134 81.3
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.1e-47 194.1 122 82.8
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 3.6e-47 193.4 408 31.9
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 8.1e-47 192.2 123 76.4
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 6.9e-46 189.1 163 64.4
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 2.6e-45 187.2 509 31.0
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 1.2e-37 161.8 121 71.9
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 7.6e-37 159.1 220 49.5
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 2.7e-34 150.6 512 29.3
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.1e-30 138.7 95 58.9
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 9.0e-30 135.6 91 76.9
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 3.4e-21 107.1 105 60.0
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 3.8e-20 103.6 68 79.4
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 8.7e-17 92.4 115 52.2
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.1e-16 92.0 55 85.5
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 4.3e-16 90.1 59 78.0
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 2.2e-15 87.8 57 78.9
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 1.2e-13 82.0 108 49.1
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 3.4e-13 80.5 60 66.7
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 3.8e-12 77.0 61 65.6
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 8.5e-12 75.9 67 58.2
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 2.1e-10 71.2 62 61.3
Psat1g145560 Pisum sativum HOM05D005230 ORTHO05D006506 2.7e-10 70.9 104 45.2
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 6.1e-10 69.7 50 80.0
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.1e-08 65.5 97 44.3
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 3.1e-06 57.4 413 20.6
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 6.9e-06 56.2 55 56.4
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 9.1e-06 55.8 259 23.9
THA.LOC104805832 Tarenaya hassleriana HOM05D004145 ORTHO05D004879 9.1e-06 55.8 423 21.0


User provided reference genes

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