Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 4.8e-97 357.8 181 100.0
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 1.9e-90 335.9 189 92.1
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 4.2e-77 291.6 191 79.1
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 9.4e-77 290.4 190 80.5
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 1.2e-76 290.0 195 77.9
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 1.6e-76 289.7 180 80.6
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 2.7e-76 288.9 193 76.7
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 3.6e-76 288.5 194 77.3
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 1.0e-75 287.0 197 77.2
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 1.4e-75 286.6 177 81.9
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 1.4e-75 286.6 192 76.6
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 1.8e-75 286.2 191 79.1
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 3.0e-75 285.4 192 76.6
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 3.9e-75 285.0 192 76.6
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 3.9e-75 285.0 192 76.6
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 3.9e-75 285.0 192 76.6
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 3.9e-75 285.0 177 83.6
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 5.1e-75 284.6 197 77.2
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 6.7e-75 284.3 191 77.0
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 8.8e-75 283.9 196 76.5
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.1e-74 283.5 192 76.6
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.5e-74 283.1 188 77.7
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.5e-74 283.1 188 77.7
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 1.5e-74 283.1 188 77.7
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 2.0e-74 282.7 177 81.9
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 3.3e-74 282.0 178 80.9
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 3.3e-74 282.0 192 76.0
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 4.4e-74 281.6 183 80.3
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 5.7e-74 281.2 177 81.4
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 5.7e-74 281.2 193 75.6
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 7.4e-74 280.8 177 80.2
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 1.3e-73 280.0 194 74.2
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 1.3e-73 280.0 193 76.7
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 1.7e-73 279.6 199 74.4
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 2.8e-73 278.9 190 75.3
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 3.7e-73 278.5 184 76.6
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 4.8e-73 278.1 176 80.7
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 6.3e-73 277.7 184 80.4
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 6.3e-73 277.7 191 76.4
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 1.1e-72 276.9 194 73.7
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 1.4e-72 276.6 190 74.7
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 1.8e-72 276.2 192 75.5
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 3.1e-72 275.4 181 77.9
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 5.3e-72 274.6 177 80.2
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 1.5e-71 273.1 175 78.9
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 1.5e-71 273.1 183 77.6
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 1.5e-71 273.1 192 74.5
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 2.0e-71 272.7 197 73.6
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 2.0e-71 272.7 175 80.0
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 2.0e-71 272.7 175 80.0
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 2.6e-71 272.3 174 78.7
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 3.5e-71 271.9 174 78.7
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 3.5e-71 271.9 190 74.7
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 4.5e-71 271.6 183 76.5
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 7.7e-71 270.8 196 73.5
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 1.0e-70 270.4 196 73.5
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 1.3e-70 270.0 174 79.3
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 1.3e-70 270.0 174 79.3
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 1.3e-70 270.0 174 79.3
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 1.7e-70 269.6 179 77.1
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 6.5e-70 267.7 177 76.3
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 6.5e-70 267.7 187 74.9
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 1.4e-69 266.5 197 70.6
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 3.2e-69 265.4 187 74.3
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 1.2e-68 263.5 194 74.2
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 1.2e-68 263.5 168 79.2
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 1.6e-68 263.1 201 68.7
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 4.7e-68 261.5 201 68.2
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 6.1e-68 261.2 201 69.2
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 8.0e-68 260.8 201 69.2
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 8.0e-68 260.8 201 69.2
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 8.0e-68 260.8 201 69.2
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 1.4e-67 260.0 174 75.3
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 1.8e-67 259.6 202 68.3
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 2.3e-67 259.2 204 68.1
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 2.3e-67 259.2 204 68.1
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 3.9e-67 258.5 205 67.8
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 5.2e-67 258.1 206 68.0
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 6.7e-67 257.7 198 68.7
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 6.7e-67 257.7 198 68.7
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 8.8e-67 257.3 198 69.2
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 2.0e-66 256.1 174 75.9
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 2.0e-66 256.1 173 74.6
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 9.7e-66 253.8 171 76.0
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 2.8e-65 252.3 181 71.3
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 4.8e-65 251.5 198 67.7
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 6.3e-65 251.1 188 71.3
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 2.4e-64 249.2 175 71.4
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 8.5e-62 240.7 173 69.9
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.1e-61 240.4 181 70.2
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 1.9e-61 239.6 204 63.7
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 1.9e-61 239.6 186 65.6
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 1.9e-61 239.6 186 65.6
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.8e-59 233.0 179 67.6
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 7.0e-56 221.1 145 75.2
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 1.2e-55 220.3 153 73.9
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 1.3e-54 216.9 151 72.8
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 4.7e-52 208.4 147 72.1
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 9.8e-50 200.7 173 64.2
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 4.5e-47 191.8 173 57.8
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 5.5e-45 184.9 143 66.4
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 8.9e-43 177.6 173 49.7
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 2.8e-41 172.6 171 53.2
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 7.0e-40 167.9 179 53.1
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 5.9e-39 164.9 172 47.7
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 1.9e-37 159.8 96 79.2
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 9.5e-37 157.5 106 74.5
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 1.4e-35 153.7 106 72.6
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 4.1e-32 142.1 177 47.5
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 1.7e-30 136.7 112 59.8
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 1.7e-22 110.2 131 47.3
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 1.5e-18 97.1 91 58.2
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 4.3e-13 79.0 61 63.9
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 5.2e-11 72.0 46 76.1
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 9.9e-10 67.8 39 87.2


User provided reference genes

Program Settings