Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.53Z2AK Arachis hypogaea HOM05D000120 ORTHO05D021289 1.4e-17 91.7 41 100.0
arahy.Tifrunner.gnm1.ann1.GKF5EZ Arachis hypogaea HOM05D000120 ORTHO05D021289 4.2e-17 90.1 41 97.6
arahy.Tifrunner.gnm1.ann1.LKG7K9 Arachis hypogaea HOM05D000120 ORTHO05D021289 1.1e-09 65.5 70 51.4
arahy.Tifrunner.gnm1.ann1.D6190P Arachis hypogaea HOM05D000120 ORTHO05D000068 9.4e-09 62.4 29 93.1
Psat2g183720 Pisum sativum HOM05D000120 ORTHO05D000068 9.4e-09 62.4 29 89.7
arahy.Tifrunner.gnm1.ann1.AVNA5K Arachis hypogaea HOM05D000120 ORTHO05D000068 1.2e-08 62.0 29 93.1
Aqoxy1G00143 Aquilegia oxysepala HOM05D000120 ORTHO05D000068 2.1e-08 61.2 29 93.1
Glyma.11G021100 Glycine max HOM05D000120 ORTHO05D000068 2.1e-08 61.2 29 93.1
LjContig00312_ERROPOS870357g0021319 Lotus japonicus HOM05D000120 ORTHO05D000068 2.1e-08 61.2 29 93.1
Lalb_Chr09g0320821 Lupinus albus HOM05D000120 ORTHO05D000068 2.1e-08 61.2 29 89.7
Medtr5g010000 Medicago truncatula HOM05D000120 ORTHO05D000068 2.1e-08 61.2 29 93.1
MELO3C005716.2 Cucumis melo HOM05D000120 ORTHO05D000068 3.6e-08 60.5 31 83.9
AUR62010756 Chenopodium quinoa HOM05D000120 ORTHO05D000068 4.7e-08 60.1 29 86.2
Hund14269 Selenicereus undatus HOM05D000120 ORTHO05D021289 4.7e-08 60.1 30 83.3
COL.COLO4_08359 Corchorus olitorius HOM05D000120 ORTHO05D000068 6.1e-08 59.7 29 86.2
CsaV3_5G002380 Cucumis sativus L. HOM05D000120 ORTHO05D000068 6.1e-08 59.7 31 83.9
TWI81G0667 Tripterygium wilfordii HOM05D000120 ORTHO05D000068 6.1e-08 59.7 29 89.7
Actinidia33730 Actinidia chinensis HOM05D000120 ORTHO05D000068 8.0e-08 59.3 29 86.2
Ca_04360_v3 Cicer arietinum L. HOM05D000120 ORTHO05D000068 8.0e-08 59.3 26 96.2
Ca_24535_v3 Cicer arietinum L. HOM05D000120 ORTHO05D000068 8.0e-08 59.3 26 96.2
Haze_08754 Corylus avellana HOM05D000120 ORTHO05D000068 8.0e-08 59.3 29 86.2
FvH4_5g03220 Fragaria vesca HOM05D000120 ORTHO05D000068 8.0e-08 59.3 29 86.2
FAN08G0415 Fragaria x ananassa HOM05D000120 ORTHO05D000068 8.0e-08 59.3 29 86.2
FAN13G1827 Fragaria x ananassa HOM05D000120 ORTHO05D000068 8.0e-08 59.3 29 86.2
FAN18G4538 Fragaria x ananassa HOM05D000120 ORTHO05D000068 8.0e-08 59.3 29 86.2
Rhsim07G0087500 Rhododendron simsii HOM05D000120 ORTHO05D000068 8.0e-08 59.3 29 86.2
RcHm_v2.0_Chr7g0196541 Rosa chinensis HOM05D000120 ORTHO05D000068 8.0e-08 59.3 29 86.2
TPR.G6677 Trifolium pratense HOM05D000120 ORTHO05D000068 8.0e-08 59.3 28 92.9
Medtr5g009970 Medicago truncatula HOM05D000120 ORTHO05D000068 1.0e-07 58.9 29 86.2
Zm00001eb042070 Zea mays HOM05D000120 ORTHO05D000068 1.4e-07 58.5 29 86.2
Aa31LG6G6760 Aethionema arabicum HOM05D000120 ORTHO05D000068 1.8e-07 58.2 29 82.8
AL7G29850 Arabidopsis lyrata HOM05D000120 ORTHO05D000068 1.8e-07 58.2 29 82.8
Thhalv10025071m.g Eutrema salsugineum HOM05D000120 ORTHO05D000068 1.8e-07 58.2 29 82.8
CAN.G532.45 Capsicum annuum HOM05D000120 ORTHO05D000068 2.3e-07 57.8 29 86.2
Nitab4.5_0013322g0010 Nicotiana tabacum HOM05D000120 ORTHO05D000068 2.3e-07 57.8 29 86.2
Phvul.002G160200 Phaseolus vulgaris HOM05D000120 ORTHO05D000068 2.3e-07 57.8 29 89.7
TAR374G0178 Trochodendron aralioides HOM05D000120 ORTHO05D000068 2.3e-07 57.8 29 82.8
TAR374G1131 Trochodendron aralioides HOM05D000120 ORTHO05D000068 2.3e-07 57.8 29 82.8
VMungo1215G1778 Vigna mungo HOM05D000120 ORTHO05D000068 2.3e-07 57.8 29 89.7
Actinidia27363 Actinidia chinensis HOM05D000120 ORTHO05D000068 3.0e-07 57.4 28 85.7
ATR0721G001 Amborella trichopoda HOM05D000120 ORTHO05D000068 3.0e-07 57.4 30 80.0
Ciclev10023813m.g Citrus clementina HOM05D000120 ORTHO05D000068 3.0e-07 57.4 29 82.8
PGR031G0919 Punica granatum HOM05D000120 ORTHO05D000068 3.0e-07 57.4 30 80.0
SalBow1G0625 Salvia bowleyana HOM05D000120 ORTHO05D000068 3.0e-07 57.4 31 77.4
AT4G23560 Arabidopsis thaliana HOM05D000120 ORTHO05D000068 4.0e-07 57.0 29 79.3
Carub.0007s1760 Capsella rubella HOM05D000120 ORTHO05D000068 4.0e-07 57.0 29 79.3
Carub.0007s1777 Capsella rubella HOM05D000120 ORTHO05D000068 4.0e-07 57.0 29 79.3
Duzib068G0747 Durio zibethinus HOM05D000120 ORTHO05D000068 4.0e-07 57.0 29 82.8
GSVIVG01019420001 Vitis vinifera HOM05D000120 ORTHO05D000068 4.0e-07 57.0 29 82.8
Atru.chr9.2111 Acer truncatum HOM05D000120 ORTHO05D000068 5.2e-07 56.6 29 82.8
BcaC06g35154 Brassica carinata HOM05D000120 ORTHO05D000068 5.2e-07 56.6 29 79.3
BcaNung01066 Brassica carinata HOM05D000120 ORTHO05D000068 5.2e-07 56.6 29 79.3
A01p14850 Brassica napus HOM05D000120 ORTHO05D000068 5.2e-07 56.6 29 79.3
C01p18540 Brassica napus HOM05D000120 ORTHO05D000068 5.2e-07 56.6 29 79.3
BolC1t01779H Brassica oleracea HOM05D000120 ORTHO05D000068 5.2e-07 56.6 29 79.3
BolC7t42441H Brassica oleracea HOM05D000120 ORTHO05D000068 5.2e-07 56.6 29 79.3
BolC7t42448H Brassica oleracea HOM05D000120 ORTHO05D000068 5.2e-07 56.6 29 79.3
BraA01t01427Z Brassica rapa HOM05D000120 ORTHO05D000068 5.2e-07 56.6 29 79.3
Cpa.g.sc180.8 Carica papaya HOM05D000120 ORTHO05D000068 5.2e-07 56.6 29 82.8
QL12p031770 Quercus lobata HOM05D000120 ORTHO05D000068 5.2e-07 56.6 29 86.2
SGA_v2.0_scaffold173G39135 Striga asiatica HOM05D000120 ORTHO05D000068 5.2e-07 56.6 29 82.8
AL6G43360 Arabidopsis lyrata HOM05D000120 ORTHO05D000068 6.7e-07 56.2 29 79.3
AT4G09740 Arabidopsis thaliana HOM05D000120 ORTHO05D000068 6.7e-07 56.2 29 79.3
Cfa012247 Carpinus fangiana HOM05D000120 ORTHO05D000068 6.7e-07 56.2 29 79.3
Haze_08755 Corylus avellana HOM05D000120 ORTHO05D000068 6.7e-07 56.2 29 82.8
Dinv37593 Davidia involucrata HOM05D000120 ORTHO05D000068 6.7e-07 56.2 28 85.7
Lsat_1_v5_gn_3_8480 Lactuca sativa HOM05D000120 ORTHO05D000068 6.7e-07 56.2 28 85.7
Sopen08g029920 Solanum pennellii HOM05D000120 ORTHO05D000068 6.7e-07 56.2 29 82.8
PGSC0003DMG400012183 Solanum tuberosum HOM05D000120 ORTHO05D000068 6.7e-07 56.2 29 82.8
CiPaw.11G129600 Carya illinoinensis HOM05D000120 ORTHO05D000068 8.8e-07 55.8 29 79.3
Dinv33350 Davidia involucrata HOM05D000120 ORTHO05D000068 8.8e-07 55.8 29 82.8
Migut.A00717 Erythranthe guttata HOM05D000120 ORTHO05D000068 8.8e-07 55.8 29 82.8
Eucgr.D01810 Eucalyptus grandis HOM05D000120 ORTHO05D000068 8.8e-07 55.8 29 82.8
Gohir.A02G098500 Gossypium hirsutum HOM05D000120 ORTHO05D000068 1.1e-06 55.5 36 69.4
Gohir.A12G233200 Gossypium hirsutum HOM05D000120 ORTHO05D000068 1.1e-06 55.5 29 82.8
Gohir.D03G085233 Gossypium hirsutum HOM05D000120 ORTHO05D000068 1.1e-06 55.5 36 72.2
Gohir.D12G234100 Gossypium hirsutum HOM05D000120 ORTHO05D000068 1.1e-06 55.5 29 82.8
Gorai.003G077300 Gossypium raimondii HOM05D000120 ORTHO05D000068 1.1e-06 55.5 36 72.2
Manes.02G017000 Manihot esculenta HOM05D000120 ORTHO05D000068 1.1e-06 55.5 29 79.3
Sed0011553 Sechium edule HOM05D003118 ORTHO05D003618 1.1e-06 55.5 31 77.4
Sc01g0009870 Simmondsia chinensis HOM05D000120 ORTHO05D000068 1.1e-06 55.5 29 79.3
CARHR230940 Cardamine hirsuta HOM05D000120 ORTHO05D000068 1.5e-06 55.1 28 78.6
Eucgr.D01675 Eucalyptus grandis HOM05D000120 ORTHO05D000068 1.5e-06 55.1 36 72.2
SEGI_21702 Sequoiadendron giganteum HOM05D000120 ORTHO05D000068 1.5e-06 55.1 28 82.1
SEGI_29635 Sequoiadendron giganteum HOM05D000120 ORTHO05D000068 1.5e-06 55.1 28 82.1
Zm00001eb230580 Zea mays HOM05D000120 ORTHO05D000068 1.5e-06 55.1 36 66.7
Thecc.03G286800 Theobroma cacao HOM05D000120 ORTHO05D000068 2.0e-06 54.7 29 79.3
Sp7g21480 Schrenkiella parvula HOM05D000120 ORTHO05D000068 2.6e-06 54.3 29 75.9
Duzib205G0355 Durio zibethinus HOM05D000120 ORTHO05D000068 3.3e-06 53.9 36 69.4
FAN04G2205 Fragaria x ananassa HOM05D000120 ORTHO05D000068 3.3e-06 53.9 29 79.3
PGR031G3728 Punica granatum HOM05D000120 ORTHO05D000068 3.3e-06 53.9 36 66.7
Atru.chr9.2112 Acer truncatum HOM05D000120 ORTHO05D000068 4.4e-06 53.5 29 79.3
AagrBONN_evm.TU.Sc2ySwM_362.2613 Anthoceros agrestis HOM05D000120 ORTHO05D000068 4.4e-06 53.5 30 70.0
COL.COLO4_10809 Corchorus olitorius HOM05D000120 ORTHO05D000068 4.4e-06 53.5 36 69.4
Os08g0387400 Oryza sativa ssp. japonica HOM05D000120 ORTHO05D000068 4.4e-06 53.5 29 75.9
Gorai.008G250400 Gossypium raimondii HOM05D000120 ORTHO05D000068 5.7e-06 53.1 29 79.3
Lj2A156G51 Lonicera japonica HOM05D000120 ORTHO05D000068 7.5e-06 52.8 36 69.4
Aqoxy5G04320 Aquilegia oxysepala HOM05D000120 ORTHO05D000068 9.7e-06 52.4 35 71.4
CSS0021047 Camellia sinensis var. sinensis HOM05D000120 ORTHO05D000068 9.7e-06 52.4 35 71.4
CSS0043852 Camellia sinensis var. sinensis HOM05D000120 ORTHO05D000068 9.7e-06 52.4 35 71.4
Dinv18745 Davidia involucrata HOM05D000120 ORTHO05D000068 9.7e-06 52.4 35 68.6
FvH4_5g10810 Fragaria vesca HOM05D000120 ORTHO05D000068 9.7e-06 52.4 35 71.4
FAN04G2829 Fragaria x ananassa HOM05D000120 ORTHO05D000068 9.7e-06 52.4 35 71.4
FAN08G0199 Fragaria x ananassa HOM05D000120 ORTHO05D000068 9.7e-06 52.4 35 71.4
FAN13G2204 Fragaria x ananassa HOM05D001294 ORTHO05D001178 9.7e-06 52.4 35 71.4
FAN18G3831 Fragaria x ananassa HOM05D000120 ORTHO05D000068 9.7e-06 52.4 35 71.4
HanXRQChr06g0166761 Helianthus annuus HOM05D000120 ORTHO05D000068 9.7e-06 52.4 35 71.4
Lalb_Chr16g0377041 Lupinus albus HOM05D000120 ORTHO05D000068 9.7e-06 52.4 29 75.9
Manes.01G002800 Manihot esculenta HOM05D000120 ORTHO05D000068 9.7e-06 52.4 35 71.4
RcHm_v2.0_Chr7g0187351 Rosa chinensis HOM05D000120 ORTHO05D000068 9.7e-06 52.4 35 71.4
SEGI_10999 Sequoiadendron giganteum HOM05D000120 ORTHO05D000068 9.7e-06 52.4 30 70.0
SEGI_12239 Sequoiadendron giganteum HOM05D000120 ORTHO05D000068 9.7e-06 52.4 30 70.0
SEGI_13875 Sequoiadendron giganteum HOM05D000120 ORTHO05D000068 9.7e-06 52.4 30 70.0
SEGI_13897 Sequoiadendron giganteum HOM05D000120 ORTHO05D000068 9.7e-06 52.4 30 70.0
SEGI_19007 Sequoiadendron giganteum HOM05D000120 ORTHO05D000068 9.7e-06 52.4 30 70.0
SEGI_25873 Sequoiadendron giganteum HOM05D000120 ORTHO05D000068 9.7e-06 52.4 30 70.0
SEGI_27697 Sequoiadendron giganteum HOM05D000120 ORTHO05D000068 9.7e-06 52.4 30 70.0
SEGI_33668 Sequoiadendron giganteum HOM05D000120 ORTHO05D000068 9.7e-06 52.4 30 70.0
SEGI_38387 Sequoiadendron giganteum HOM05D000120 ORTHO05D000068 9.7e-06 52.4 30 70.0
Sc01g0010760 Simmondsia chinensis HOM05D000120 ORTHO05D000068 9.7e-06 52.4 35 71.4
vmacro13973 Vaccinium macrocarpon HOM05D000120 ORTHO05D000068 9.7e-06 52.4 29 75.9


User provided reference genes

Program Settings