Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.53RDS0 Arachis hypogaea HOM05D001206 ORTHO05D005935 3.6e-72 275.0 158 100.0
arahy.Tifrunner.gnm1.ann1.BZT8G9 Arachis hypogaea HOM05D001206 ORTHO05D005935 2.4e-12 76.3 45 77.8
arahy.Tifrunner.gnm1.ann1.DXFN4R Arachis hypogaea HOM05D001206 ORTHO05D005935 2.4e-12 76.3 45 77.8
Phvul.006G036200 Phaseolus vulgaris HOM05D001206 ORTHO05D005935 2.3e-10 69.7 48 60.4
FAN14G2675 Fragaria x ananassa HOM05D001206 ORTHO05D005935 3.0e-10 69.3 50 58.0
EL10Ac9g21024 Beta vulgaris HOM05D001206 ORTHO05D005935 5.1e-10 68.6 48 60.4
QL08p043357 Quercus lobata HOM05D001206 ORTHO05D005935 5.1e-10 68.6 45 64.4
SalBow7G4591 Salvia bowleyana HOM05D001206 ORTHO05D005935 5.1e-10 68.6 46 60.9
Psat5g186880 Pisum sativum HOM05D001206 ORTHO05D005935 6.6e-10 68.2 45 66.7
VMungo0540G0597 Vigna mungo HOM05D001206 ORTHO05D005935 8.6e-10 67.8 48 60.4
HanXRQChr13g0387351 Helianthus annuus HOM05D001206 ORTHO05D005935 1.1e-09 67.4 46 60.9
Medtr3g048950 Medicago truncatula HOM05D001206 ORTHO05D005935 1.5e-09 67.0 45 64.4
Haze_13465 Corylus avellana HOM05D001206 ORTHO05D005935 1.9e-09 66.6 45 62.2
Cpa.g.sc139.29 Carica papaya HOM05D001206 ORTHO05D005935 2.5e-09 66.2 46 60.9
RcHm_v2.0_Chr2g0150631 Rosa chinensis HOM05D001206 ORTHO05D005935 2.5e-09 66.2 48 58.3
Glyma.08G311400 Glycine max HOM05D001206 ORTHO05D005935 3.3e-09 65.9 45 64.4
Atru.chr6.3565 Acer truncatum HOM05D001206 ORTHO05D005935 4.3e-09 65.5 44 63.6
Potri.018G086350 Populus trichocarpa HOM05D001206 ORTHO05D005935 4.3e-09 65.5 45 62.2
ECA233G3159 Erigeron canadensis HOM05D001206 ORTHO05D005935 5.6e-09 65.1 46 60.9
Gohir.A06G169500 Gossypium hirsutum HOM05D001206 ORTHO05D005935 5.6e-09 65.1 44 61.4
Gohir.D06G177200 Gossypium hirsutum HOM05D001206 ORTHO05D005935 5.6e-09 65.1 44 61.4
Gorai.N008100 Gossypium raimondii HOM05D001206 ORTHO05D005935 5.6e-09 65.1 44 61.4
Thecc.10G113900 Theobroma cacao HOM05D001206 ORTHO05D005935 5.6e-09 65.1 44 61.4
unitig_22.g6850 Utricularia gibba HOM05D001206 ORTHO05D005935 5.6e-09 65.1 46 63.0
GSVIVG01020788001 Vitis vinifera HOM05D001206 ORTHO05D005935 5.6e-09 65.1 44 61.4
Eucgr.K01190 Eucalyptus grandis HOM05D001206 ORTHO05D005935 7.3e-09 64.7 45 62.2
Nn6g34432 Nelumbo nucifera HOM05D001206 ORTHO05D005935 7.3e-09 64.7 44 61.4
CANSAT64G1074 Cannabis sativa HOM05D001206 ORTHO05D005935 9.5e-09 64.3 45 60.0
MD09G1156700 Malus domestica HOM05D001206 ORTHO05D005935 1.2e-08 63.9 45 60.0
MD17G1143200 Malus domestica HOM05D001206 ORTHO05D005935 1.2e-08 63.9 45 60.0
CiPaw.03G196100 Carya illinoinensis HOM05D001206 ORTHO05D005935 1.6e-08 63.5 45 60.0
Peaxi162Scf00035g03126 Petunia axillaris HOM05D001206 ORTHO05D005935 1.6e-08 63.5 46 56.5
Ah.01g016080 Amaranthus hybridus HOM05D001206 ORTHO05D005935 2.1e-08 63.2 45 62.2
Ca_14632_v3 Cicer arietinum L. HOM05D001206 ORTHO05D005935 2.1e-08 63.2 45 60.0
Hma1.2p1_3358F.1_g335550 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 2.1e-08 63.2 44 56.8
Ciclev10014821m.g Citrus clementina HOM05D001206 ORTHO05D005935 3.6e-08 62.4 44 61.4
Migut.H02113 Erythranthe guttata HOM05D001206 ORTHO05D005935 3.6e-08 62.4 45 55.6
Lsat_1_v5_gn_8_31840 Lactuca sativa HOM05D001206 ORTHO05D005935 3.6e-08 62.4 42 61.9
PSO017G2524 Papaver somniferum HOM05D001206 ORTHO05D005935 3.6e-08 62.4 43 65.1
MSTRG.12835 Avicennia marina HOM05D001206 ORTHO05D005935 4.7e-08 62.0 46 54.3
AUR62004905 Chenopodium quinoa HOM05D001206 ORTHO05D005935 4.7e-08 62.0 46 56.5
Prupe.3G169900 Prunus persica HOM05D001206 ORTHO05D005935 6.2e-08 61.6 45 57.8
TPR.G13547 Trifolium pratense HOM05D001206 ORTHO05D005935 6.2e-08 61.6 41 63.4
Cc05_g09120 Coffea canephora HOM05D001206 ORTHO05D005935 8.1e-08 61.2 45 55.6
PGR142G3322 Punica granatum HOM05D001206 ORTHO05D005935 8.1e-08 61.2 41 61.0
TWI38G0487 Tripterygium wilfordii HOM05D001206 ORTHO05D005935 8.1e-08 61.2 44 56.8
vmacro12422 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 8.1e-08 61.2 45 55.6
vmacro12423 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 8.1e-08 61.2 45 55.6
TAR629G1684 Trochodendron aralioides HOM05D001206 ORTHO05D005935 1.1e-07 60.8 44 59.1
Carub.0005s0348 Capsella rubella HOM05D001206 ORTHO05D005935 1.4e-07 60.5 43 62.8
AUR62032754 Chenopodium quinoa HOM05D001206 ORTHO05D005935 1.4e-07 60.5 45 57.8
ATR1096G083 Amborella trichopoda HOM05D001206 ORTHO05D005935 1.8e-07 60.1 43 58.1
AL5G14200 Arabidopsis lyrata HOM05D001206 ORTHO05D005935 1.8e-07 60.1 43 60.5
AT3G25660 Arabidopsis thaliana HOM05D001206 ORTHO05D005935 1.8e-07 60.1 43 60.5
ClCG09G022260 Citrullus lanatus HOM05D001206 ORTHO05D005935 1.8e-07 60.1 46 54.3
Lalb_Chr15g0080441 Lupinus albus HOM05D001206 ORTHO05D005935 1.8e-07 60.1 44 59.1
Manes.01G129100 Manihot esculenta HOM05D001206 ORTHO05D005935 1.8e-07 60.1 44 54.5
PSO478G1473 Papaver somniferum HOM05D001206 ORTHO05D005935 1.8e-07 60.1 43 62.8
CAN.G1191.9 Capsicum annuum HOM05D001206 ORTHO05D005935 2.3e-07 59.7 47 48.9
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 2.3e-07 59.7 46 54.3
CSS0050390 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 5.2e-07 58.5 45 53.3
CARHR260190 Cardamine hirsuta HOM05D001206 ORTHO05D005935 5.2e-07 58.5 43 58.1
CARHR288520 Cardamine hirsuta HOM05D001206 ORTHO05D005935 6.8e-07 58.2 42 59.5
Sp2g14920 Schrenkiella parvula HOM05D001206 ORTHO05D005935 6.8e-07 58.2 42 59.5
Aa31LG2G6650 Aethionema arabicum HOM05D001206 ORTHO05D005935 8.9e-07 57.8 43 58.1
Solyc10g007840.3 Solanum lycopersicum HOM05D001206 ORTHO05D005935 8.9e-07 57.8 46 50.0
Sopen10g003740 Solanum pennellii HOM05D001206 ORTHO05D005935 8.9e-07 57.8 46 50.0
THA.LOC104824040 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 1.2e-06 57.4 43 55.8
Aqoxy3G00674 Aquilegia oxysepala HOM05D001206 ORTHO05D005935 1.5e-06 57.0 45 55.6
BcaB07g30635 Brassica carinata HOM05D001206 ORTHO05D005935 1.5e-06 57.0 42 59.5
BcaB07g30259 Brassica carinata HOM05D001206 ORTHO05D005935 2.6e-06 56.2 42 59.5
A09p24920 Brassica napus HOM05D001206 ORTHO05D005935 2.6e-06 56.2 42 59.5
BraA09t38080Z Brassica rapa HOM05D001206 ORTHO05D005935 2.6e-06 56.2 42 59.5
CDE05G3011 Ceratophyllum demersum HOM05D001206 ORTHO05D005935 2.6e-06 56.2 47 55.3
Rhsim06G0124000 Rhododendron simsii HOM05D001206 ORTHO05D005935 2.6e-06 56.2 44 52.3
Actinidia11180 Actinidia chinensis HOM05D001206 ORTHO05D005935 3.4e-06 55.8 44 52.3
Gorai.N005800 Gossypium raimondii HOM05D001206 ORTHO05D005935 3.4e-06 55.8 44 56.8
Thhalv10012940m.g Eutrema salsugineum HOM05D001206 ORTHO05D005935 9.9e-06 54.3 42 54.8


User provided reference genes

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